BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0001.p (382 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 310 2e-82 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 281 8e-74 C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein 212 6e-53 B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein 208 6e-52 C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein 205 8e-51 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/340 (44%), Positives = 222/340 (65%) Query: 26 LESTATIRDQLADYLSEQCMSINQFADRCGINSGTLSRIVKGNQPIAMSHLELLTKGMGK 85 L + TI +L YL ++ +SI+ FA++ INSGTLSR +KG QP+++S+L+L+T+ M Sbjct: 2 LPTDTTISTELLRYLKKENLSISSFANKSRINSGTLSRFIKGQQPLSVSNLDLVTEAMNL 61 Query: 86 GEDHFFSLYVDECFYYSAPTWRRLRPFMIRCAELGRMDCIERMVQILLDNLNNVPTLFEV 145 E +F+S Y EC S+P WRRL PF++RCAEL ++ C++++V +++DNL LF+ Sbjct: 62 EEGYFYSFYAYECMIQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMMMDNLTYSSLLFDT 121 Query: 146 AEGLFKQGQWQAAALLYENVSASEKYQYSERLAMCQYRLFRIALGDDQSENLRAATLFEP 205 AE L+ +G +AA ++Y+ V+ SEKYQ++ERL MCQYR+F +L DQ NL FE Sbjct: 122 AEALYHKGNREAALIIYKKVAESEKYQHAERLGMCQYRIFTCSLNSDQEHNLDCTIQFEN 181 Query: 206 YVPRLDEADQLDALRHLAHVYGSLHKWCKVEELAQEMLHLAKIRYDLKGHSAQKYDNEKT 265 YV RL +A QLDAL+ LA+ SL KW K + QEM ++++ Y K A+ K Sbjct: 182 YVKRLPDAVQLDALKDLANTLLSLRKWNKAKYYIQEMGRISRVLYSQKHKQARPSSRLKR 241 Query: 266 SERPLYFYILYAYLMRSNVYKERGDYKTALELVPFYTDGSWIKENDEEVQRTLLQFREWG 325 +PL+ YILY+ L+ ++ E DY AL V Y D SW+KE+DE + T QFREW Sbjct: 242 PAKPLFGYILYSDLLLGSIAAENDDYDQALYYVSCYEDQSWVKESDEAAEITKEQFREWA 301 Query: 326 KANTYLYRLLEGQAEVLDEYVEYISSQSGEIFIALYNIIK 365 K N YLY L++G +VL+ Y++Y+SS+ EI AL+ II+ Sbjct: 302 KGNRYLYELMKGNTDVLEPYIDYLSSRENEILKALFKIIQ 341 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 281 bits (719), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 139/294 (47%), Positives = 197/294 (67%), Gaps = 3/294 (1%) Query: 71 IAMSHLELLTKGMGKGEDHFFSLYVDECFYYSAPTWRRLRPFMIRCAELGRMDCIERMVQ 130 ++M L+ +T+GMG E HF++LY+ E +++ P WRRLRPF+ RCAEL ++DC+ R + Sbjct: 1 MSMHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTAR 60 Query: 131 ILLDNLNNVPTLFEVAEGLFKQGQWQAAALLYENVSASEKYQYSERLAMCQYRLFRIALG 190 + L+N+N VP LFE+AE LF + +++AAALLYE V+ EK QYSERLA+CQYRLF I LG Sbjct: 61 MTLENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLALCQYRLFLIRLG 120 Query: 191 DDQSENLRAATLFEPYVPRLDEADQLDALRHLAHVYGSLHKWCKVEELAQEMLHLAKIRY 250 ++Q ENL+AA FEPY+ RLDE QLDA L ++ SL + K+E LA+ M H A+I Y Sbjct: 121 ENQEENLQAAVYFEPYIDRLDEMYQLDAYVKLINLNISLQRMDKIEALAKRMEHHARIHY 180 Query: 251 DLKGHSAQKYDNEKTSERPLYFYILYAYLMRSNVYKERGDYKTALELVPFYTDGSWIKEN 310 + ++ +PL FYILY+YL+++ +Y+ERGDY A V Y WI Sbjct: 181 Q---QNRSWFEGSGNPRKPLIFYILYSYLIQAYLYQERGDYDNAFYYVSLYEKPDWITNA 237 Query: 311 DEEVQRTLLQFREWGKANTYLYRLLEGQAEVLDEYVEYISSQSGEIFIALYNII 364 E + QF+EW +AN Y++ L+ GQ L +YV+Y+ S+ EIF+AL NI+ Sbjct: 238 SNEESLIMNQFKEWAEANRYMFSLMSGQPGALHQYVDYVESREHEIFLALCNIM 291 >C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein Length = 456 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 193/339 (56%), Gaps = 5/339 (1%) Query: 31 TIRDQLADYLSEQCMSINQFADRCGINSGTLSRIVKGNQPIAMS--HLELLTKGMGKGED 88 ++R ++ + E ++++ + GIN G+LS I+ GN P AM+ L+ L G+ Sbjct: 11 SLRSEIERHRRECGYTLSKLGELTGINHGSLSEILNGNPPRAMTIGQLDALAAVFGREPG 70 Query: 89 HFFSLYVDECFYYSAPTWRRLRPFMIRCAELGRMDCIERMVQILLDNLNNVPTLFEVAEG 148 + LY +EC + RL P++IRCAE+GR DCI+ +V LL+N N+ TLF VAE Sbjct: 71 WLYELYTEECITEGRISRPRLIPYLIRCAEVGRQDCIDEVVPKLLENPKNISTLFAVAEQ 130 Query: 149 LFKQGQWQAAALLYENVSASEKYQYSERLAMCQYRLFRIAL-GDDQSENLRAATLFEPYV 207 L+++G+ + + YE V +EK YS + M QYRLFR+ + G + EN +A F+PY Sbjct: 131 LYEEGKQKQSVPFYEYVIENEKDSYSNQFVMSQYRLFRVVVQGTNSEENWKAVIRFDPYR 190 Query: 208 PRLDEADQLDALRHLAHVYGSLHKWCKVEELAQEMLHLAKIRY--DLKGHSAQKYDNEKT 265 RL E +QLDAL LA+V ++HKW ++++ A E+ LA I Y +L+ + K + Sbjct: 191 RRLPENNQLDALLQLANVCYTIHKWREMDKYADELRELATIIYEDELRRRRSNKASEMLS 250 Query: 266 SERPLYFYILYAYLMRSNVYKERGDYKTALELVPFYTDGSWIKENDEEVQRTLLQFREWG 325 +ER L Y A+L++S +++ Y+ A V Y D SW + DE Q + +FR W Sbjct: 251 TERHLVVYYGQAFLIKSIALEKQELYEEAKRYVDGYADLSWFEFLDEIGQIEVQKFRSWA 310 Query: 326 KANTYLYRLLEGQAEVLDEYVEYISSQSGEIFIALYNII 364 AN Y +L G ++V+ +Y+ ++S E+ L I+ Sbjct: 311 TANLYTLNILMGNSDVIPDYIHFLSDHPKEVLSGLVTIV 349 >B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein Length = 181 Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 92/177 (51%), Positives = 135/177 (76%) Query: 26 LESTATIRDQLADYLSEQCMSINQFADRCGINSGTLSRIVKGNQPIAMSHLELLTKGMGK 85 +E TATIR+Q+ ++L + M+IN+FA+ +NSGTLS I+ GN+PI+M L+ +T GMG Sbjct: 1 MEMTATIREQMEEFLHKNEMTINRFAEISEVNSGTLSNILNGNRPISMQQLDRITSGMGL 60 Query: 86 GEDHFFSLYVDECFYYSAPTWRRLRPFMIRCAELGRMDCIERMVQILLDNLNNVPTLFEV 145 E +F+ LY+DEC +++ P WRRL PF+ RCAELG++DC+++ V++ +DN++ P LFE Sbjct: 61 EEGYFYELYIDECIFHATPDWRRLGPFLHRCAELGKLDCLDKAVRMTMDNISYSPLLFET 120 Query: 146 AEGLFKQGQWQAAALLYENVSASEKYQYSERLAMCQYRLFRIALGDDQSENLRAATL 202 AE FK+G+ +AA LLY +V+ SE++Q+SERLA+CQYRLF + L DDQ N RA+ L Sbjct: 121 AELFFKEGKHEAAVLLYRSVAESERFQHSERLALCQYRLFTLGLTDDQEMNSRASIL 177 >C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein Length = 466 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 181/341 (53%), Gaps = 8/341 (2%) Query: 31 TIRDQLADYLSEQCMSINQFADRCGINSGTLSRIVKGNQP--IAMSHLELLTKGMGKGED 88 ++R ++ + + ++++ D GIN GTLS I+ G P I +S L+ L + G Sbjct: 11 SLRSEIEQHRRARGYTLSKLGDLTGINPGTLSEILNGKPPRAITISQLDALAEVFGYEPG 70 Query: 89 HFFSLYVDECFYYSAPTWRRLRPFMIRCAELGRMDCIERMVQILLDNLNNVPTLFEVAEG 148 + LY DEC Y + RL P++IR AE GR DCIE + LL+N N+ LF VAE Sbjct: 71 WMYELYPDECLYEGKISRPRLIPYLIRSAENGRKDCIEAVASQLLENPKNISILFTVAEQ 130 Query: 149 LFKQGQWQAAALLYENVSASEKYQYSERLAMCQYRLFRIALGDDQSENLRAATLFEPYVP 208 L++ G+ A YE V +EK YS + M YRLF+ LG + EN +A F PY Sbjct: 131 LYEDGKLGKAVPFYEYVIENEKDSYSTQFVMSHYRLFQAILGTNADENEKAVIRFSPYRK 190 Query: 209 RLDEADQLDALRHLAHVYGSLHKWCKVEELAQEMLHLAKIRYDLKGHSAQKYDNEKT--- 265 RL E DQLDAL +L+ V +L KW + E A E+ L+ I Y K +K N T Sbjct: 191 RLPETDQLDALLNLSKVCFTLQKWSEAETYADELRGLSNIFYQDKLQKCRK--NRTTELI 248 Query: 266 -SERPLYFYILYAYLMRSNVYKERGDYKTALELVPFYTDGSWIKENDEEVQRTLLQFREW 324 +ERPL +Y YL + V + +G Y + E V Y D W + D+E R + +F + Sbjct: 249 KTERPLVYYYGMGYLYKGLVLQMQGAYSQSKEYVQAYADLHWFELLDDEGIRIVERFTVF 308 Query: 325 GKANTYLYRLLEGQAEVLDEYVEYISSQSGEIFIALYNIIK 365 +AN Y +L G +++ EY +Y++ Q EI L I++ Sbjct: 309 ARANFYTLEVLMGNEKIIKEYTDYLAEQPVEILPGLVTIME 349 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,142,480,817 Number of extensions: 86771753 Number of successful extensions: 199821 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 199805 Number of HSP's successfully gapped: 11 Length of query: 382 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 245 Effective length of database: 1,770,017,148 Effective search space: 433654201260 Effective search space used: 433654201260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)