BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0005.p
         (60 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5ZYK6.1 A5ZYK6_9FIRM Putative uncharacterized protein                 53   9e-06

>A5ZYK6.1 A5ZYK6_9FIRM Putative uncharacterized protein
          Length = 97

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 31/40 (77%), Gaps = 2/40 (5%)

Query: 23 FHLQPIYLVVFKG--SYMLGNLILRGASRLDAFSAYPVRT 60
          FHL PI LVVFKG  S+ +G LILRGASRLDAFS YP R 
Sbjct: 21 FHLCPIDLVVFKGVYSFRMGYLILRGASRLDAFSVYPFRA 60


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.338    0.152    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 301,100,694
Number of extensions: 8779181
Number of successful extensions: 33744
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 33744
Number of HSP's successfully gapped: 1
Length of query: 60
Length of database: 3,060,696,203
Length adjustment: 32
Effective length of query: 28
Effective length of database: 2,759,223,723
Effective search space: 77258264244
Effective search space used: 77258264244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 126 (53.1 bits)