BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0005.p
         (152 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I5H4.1 B8I5H4_CLOCE Beta-ketoacyl synthase                           75   3e-12
C3HA41.1 C3HA41_BACTU Beta-ketoacyl synthase                           63   8e-09
B9E2D3.1 B9E2D3_CLOK1 Putative uncharacterized protein                 61   3e-08
A5N8Z4.1 A5N8Z4_CLOK5 Predicted hybrid nonribosomal peptide synt...    61   4e-08
C3HA42.1 C3HA42_BACTU Beta-ketoacyl synthase                           61   4e-08

>B8I5H4.1 B8I5H4_CLOCE Beta-ketoacyl synthase
          Length = 1613

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 8/126 (6%)

Query: 27   TEVVIKDANQLQMTRSHKEIVQILARVLDLQELSIFANFEDLGWNSLLAVRLHKELDAVF 86
            T + IK +    ++     + +I A  L L+E+S++ NF DLG +S++A  L K L+  F
Sbjct: 1478 TPLKIKGSKDKGISSVQAVVARIWAGALGLEEVSVYDNFNDLGGDSVMATLLLKNLEKEF 1537

Query: 87   PGLFAISDVFSYPTVHDMAAFLERKRTVPHQREITIEQVMGDLENGIITAEEAEVLIKEI 146
            PG+  ISD+F+YP++  M+ ++E +           E++  D+EN  I  E+ E  ++EI
Sbjct: 1538 PGIVDISDIFNYPSISAMSEYIESR--------TGKEKIQPDVENQQIMTEDGEAGMEEI 1589

Query: 147  SETVER 152
             + + R
Sbjct: 1590 MQQLSR 1595


>C3HA41.1 C3HA41_BACTU Beta-ketoacyl synthase
          Length = 1609

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 35   NQLQMTRSHKEIVQILARVLDLQELSIFANFEDLGWNSLLAVRLHKELDAVFPGLFAISD 94
            N +       +I+++  +VL L+++ I   F DLG +S+ A+ L KE++  FP    +SD
Sbjct: 1484 NHIDYNSIENKILKVWIKVLGLEQIGIDDKFYDLGGDSISAIYLMKEIEKEFPSRIDVSD 1543

Query: 95   VFSYPTVHDMAAFLERK-----RTVP------HQREITIEQVMGDLENGIITAEEAEVLI 143
            +F+YP++ +MA ++E +       VP      H +E  I+ ++  L +G +   EA  LI
Sbjct: 1544 IFTYPSIREMALYIESELKNDDDCVPSQIFEDHHKEDDIDTILSKLASGELEVGEANKLI 1603


>B9E2D3.1 B9E2D3_CLOK1 Putative uncharacterized protein
          Length = 2005

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 20   PAGKPDRTEVVIKDA--NQLQM------TRSHKEIVQILARVLDLQELSIFANFEDLGWN 71
            P GK D+  +   D   N L++      T+  K++V I   VL+ +E+ I   F +LG N
Sbjct: 1703 PNGKIDKKALPEHDTGRNSLKIEYKAPTTQVEKQLVDIWEDVLEREEVGINDVFFELGGN 1762

Query: 72   SLLAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFL 108
            SLL V++H  +D ++PG   ++D+F+YPT+  +A F+
Sbjct: 1763 SLLLVQMHTRIDKLYPGKVEVADIFAYPTISKLAQFI 1799


>A5N8Z4.1 A5N8Z4_CLOK5 Predicted hybrid nonribosomal peptide
            synthetase/polyketide synthase
          Length = 2001

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 20   PAGKPDRTEVVIKDA--NQLQM------TRSHKEIVQILARVLDLQELSIFANFEDLGWN 71
            P GK D+  +   D   N L++      T+  K++V I   VL+ +E+ I   F +LG N
Sbjct: 1699 PNGKIDKKALPEHDTGRNSLKIEYKAPTTQVEKQLVDIWEDVLEREEVGINDVFFELGGN 1758

Query: 72   SLLAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFL 108
            SLL V++H  +D ++PG   ++D+F+YPT+  +A F+
Sbjct: 1759 SLLLVQMHTRIDKLYPGKVEVADIFAYPTISKLAQFI 1795


>C3HA42.1 C3HA42_BACTU Beta-ketoacyl synthase
          Length = 1604

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 8    KQLSKSLLNAQHPAGKPDRTEVVIKDANQLQMTRSHKEIVQILARVLDLQELSIFANFED 67
            K+  K+ +  +  + K   ++VVIK   +   + + K I Q+ + VLD+ EL ++ +F  
Sbjct: 1455 KEAKKTRVETEKVSLKNSTSDVVIKGKGEY-YSETEKNIAQMYSMVLDIPELDLYESFSA 1513

Query: 68   LGWNSLLAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFLE 109
            +G +S++A +L K ++  +P L  ISD+F+YP+V +++ +++
Sbjct: 1514 MGGDSIMATQLLKLINQKYPNLVDISDIFTYPSVVELSEYID 1555


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 774,049,775
Number of extensions: 27170266
Number of successful extensions: 87262
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 87487
Number of HSP's successfully gapped: 29
Length of query: 152
Length of database: 3,060,696,203
Length adjustment: 114
Effective length of query: 38
Effective length of database: 1,986,700,493
Effective search space: 75494618734
Effective search space used: 75494618734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)