BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0002.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5G397.1 A5G397_GEOUR ROK family protein 131 8e-29 B9YHG7.1 B9YHG7_ANAAZ ROK family protein 129 3e-28 B7A8L5.1 B7A8L5_THEAQ ROK family protein 129 3e-28 C4CQS2.1 C4CQS2_9CHLR Transcriptional regulator/sugar kinase 128 6e-28 A5CYL2.1 A5CYL2_PELTS Transcriptional regulator/sugar kinase 119 3e-25 >A5G397.1 A5G397_GEOUR ROK family protein Length = 328 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 16/312 (5%) Query: 6 VSIDMGGSAARLAIFD---RKVMKMEDSVKIDLGAGTEPLEAVSQLAGVIGRWEQAHKGE 62 + ID+GG+ R A+ D + + + S +I G + L+ + + W + E Sbjct: 11 IGIDVGGTNLRFALVDELGKVLFRERRSTEIHQGK-EQFLKRFFSVIASLRTWADSSGKE 69 Query: 63 IHTVVAGLAGLHDAAGTITTWPNRPAWNGFPFREAFTSATSKPVILFDDANLAAMGEYRF 122 I + AG+ GL G I + N G RE T+A P I+ +DAN +A GE + Sbjct: 70 IVAIGAGVPGLISNDGIIYSSVNLLPLEGLNLRELITAAAGLPAIVVNDANASAWGEKCY 129 Query: 123 GLAHPVSPLLYVVVGTGIGSALVMQGDVYEGARGASGELGHITVDPNGEPCPCGGFGCLQ 182 G ++ L + +GTG+GS LV+ ++ G G +GE GH+TV+P+G+PCPCG GCL+ Sbjct: 130 GAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAGEFGHVTVEPDGKPCPCGNHGCLE 189 Query: 183 LYASGRAI-----ERMAAAKGLPITKA------SDVFRLAAQGNEA-ARRIIQDSIRLLA 230 YAS A+ E + A G + ++V AA G +A A+ I +++ R L Sbjct: 190 QYASATALVAEAGEAIQAGGGGALANVPASMLNAEVLADAAHGGDALAKAIFENAGRYLG 249 Query: 231 IGIANAVRLLDPXXXXXXXXXXXRFPEDYRSLEKAVQQLLGTLPQKNVQVSLSVLGDDAA 290 I A AV LL+ + + + + +P + V++ + L DDA Sbjct: 250 IASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREILARAFAIPARRVRLVRAELEDDAG 309 Query: 291 LWGGLAYGLQQV 302 + G A L V Sbjct: 310 ILGAAAMALASV 321 >B9YHG7.1 B9YHG7_ANAAZ ROK family protein Length = 345 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 25/250 (10%) Query: 76 AAGTITTWPNRPAWNGFPFREAFTSATSKPVILFDDANLAAMGEYRFGLAHPVSPLLYVV 135 A G + + P W P ++ + PV + +DAN+AA+GE+RFG L Y+ Sbjct: 97 ATGLVRLSHHVPGWENIPLKQLLEEEYNVPVSVDNDANVAAVGEHRFGAGQGYDSLFYIT 156 Query: 136 VGTGIGSALVMQGDVYEGARGASGELGHITVDPNGEPCPCGGFGCLQLYASGRAIERMA- 194 + TG+G ++ G ++GA G +GE+GHI VDP G C CG GC++ ASG + + A Sbjct: 157 ISTGVGGGWILNGKPWQGAGGMAGEIGHIVVDPTGPVCLCGKRGCVERLASGPYMAQNAR 216 Query: 195 -----AAKGLPITKASDVFRL-----------------AAQGNEAARRIIQDSIRLLAIG 232 A P + ++ + AA G+E AR ++ + L +G Sbjct: 217 ELLEKEAHNSPTSTRGEILKYLVGNDLDLITGQIVSAAAAHGDELAREVLYKAAWALGVG 276 Query: 233 IANAVRLLDPXXXXXXXXXXXRFPEDYRSLEKAVQQLLGTLPQKNVQVSLSVLGDDAALW 292 I N L++P + ++ K Q+ LP+ N +V ++LGDDA LW Sbjct: 277 IGNVANLMNPQRFVLGGGVTKAGDSFWATVRKVAQET--ALPEVNFEVVRALLGDDAPLW 334 Query: 293 GGLAYGLQQV 302 G +A GL V Sbjct: 335 GAVALGLDVV 344 >B7A8L5.1 B7A8L5_THEAQ ROK family protein Length = 302 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 5/218 (2%) Query: 78 GTITTWPNRPAWNGFPFREAFTSATSKPVILFDDANLAAMGEYRFGLAHPVSPLLYVVVG 137 G I PN P FP R AT +PV L +DAN AA+ E+ G L++ V Sbjct: 74 GVIRFTPNIPGLQNFPIRRLLEEATGRPVYLENDANAAALAEHHLGAGKGEKSSLFLTVS 133 Query: 138 TGIGSALVMQGDVYEGARGASGELGHITVDPNGEPCPCGGFGCLQLYASGRAIERMAA-A 196 TGIG +V++G V G RG GELGH T+ P G C CG GCL+ A+GRA+ER A A Sbjct: 134 TGIGGGVVLEGRVLRGERGQGGELGHTTLLPGGPVCGCGLEGCLEALAAGRALEREAGYA 193 Query: 197 KGLPITKASDVFRLAAQGNEAARRIIQDSIRLLAIGIANAVRLLDPXXXXXXXXXXXRFP 256 G P+ ++FRL + + A RI+ + R + IG+A+ V+ DP P Sbjct: 194 YGRPV-DTRELFRLYEEKDPKAERILLQAARYVGIGLASLVKAFDPGVVILGGGIALNAP 252 Query: 257 EDY-RSLEKAVQQLLGTLPQKNVQVSLSVLGDDAALWG 293 E Y +L++A ++ L V+ +L LG +A L G Sbjct: 253 EGYFEALQEAYRRYLQGWEAPPVRKAL--LGPEAGLLG 288 >C4CQS2.1 C4CQS2_9CHLR Transcriptional regulator/sugar kinase Length = 325 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 133/259 (51%), Gaps = 20/259 (7%) Query: 1 MTDALVSIDMGGSAARLAIFDRKVMKMEDSVKIDLGAGTEPLEAVSQLAGVIGRWEQAHK 60 M+DA +++D+GG+ R A+ R + ++ A P + ++ +I + Sbjct: 1 MSDAAIAVDLGGTNIRAALVTRD-GAIRHLIRRPTLAQEGPEAVIDRIVALITEVAD-RE 58 Query: 61 GEIHTVVAGLAG---LHDAAGTITTWPNRPAWNGFPFREAFTSATSKPVILFDDANLAAM 117 G ++ GL+ L+ AG + N P W+ P R+ T + V++ +D N AA+ Sbjct: 59 GADTSIPVGLSAPGPLNPIAGVVYFATNMPGWDDIPIRDILQQRTQRAVMIGNDGNNAAL 118 Query: 118 GEYRFGLAHPVSPLLYVVVGTGIGSALVMQGDVYEGARGASGELGHITVDPNGEPCPCGG 177 GE FG+A V ++Y+ +GTG+G ++ G + EG RG GE+GH+++DP+G C CGG Sbjct: 119 GEAMFGVARGVQHMIYIALGTGVGGGIISHGQLIEGTRGLGGEVGHVSIDPSGPRCHCGG 178 Query: 178 FGCLQLYASGRAIER--------------MAAAKGLPITKASDVFRLAAQGNEAARRIIQ 223 GC++ YA+G AI R A G PIT A A G+ AAR + + Sbjct: 179 IGCVEAYAAGWAIARDGELLVHSERSRTIAEIAAGGPITAAVVAE-AARAGDPAARAVYE 237 Query: 224 DSIRLLAIGIANAVRLLDP 242 + R L +G+A V L +P Sbjct: 238 RAGRALGVGLAGFVNLFNP 256 >A5CYL2.1 A5CYL2_PELTS Transcriptional regulator/sugar kinase Length = 337 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 149/332 (44%), Gaps = 43/332 (12%) Query: 5 LVSIDMGGSA--ARLAIFDRKVMKMEDSVKIDLGAGTEPLEAVSQLAGVIGRW----EQA 58 ++ +D+GG+ LA D +V+ +K+ P EA L GVI R EQ Sbjct: 6 VIGVDLGGTKIYTALAADDGRVLS---EIKL-------PTEAGRGLQGVIDRIVHSVEQV 55 Query: 59 HKG------EIHTVVAGLAGLHDAAGTITTWPNRPAWNGFPFREAFTSATSKPVILFDDA 112 + ++ + G G D AG + + WN P R+ S PV+L +DA Sbjct: 56 RENVAVPPQKVLALALGAPGPLDTAGGVIHFAPNLRWNNVPIRQILEERLSLPVLLDNDA 115 Query: 113 NLAAMGEYRFGLAHPVSPLLYVVVGTGIGSALVMQGDVYEGARGASGELGHITVDPNGEP 172 NLAA+GE+ FG ++Y+ V TG+G L++ G +Y G+ +GE+GH+TV P+G Sbjct: 116 NLAALGEHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPV 175 Query: 173 CPCGGFGCLQLYASGRAIERMAAAKGLPITKASDVFRLAAQGNEAAR------------- 219 C CG GCL+ ASG AI R AA + LAA G + R Sbjct: 176 CSCGNRGCLEAMASGTAIARAAAEL---VASGGGRKILAAAGGDPGRINAAAVAAAAAGG 232 Query: 220 -----RIIQDSIRLLAIGIANAVRLLDPXXXXXXXXXXXRFPEDYRSLEKAVQQLLGTLP 274 II + L IG+A+ + LL+P ++ + + VQ Sbjct: 233 DPEAAAIIDRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQARALQAA 292 Query: 275 QKNVQVSLSVLGDDAALWGGLAYGLQQVSIKN 306 + ++ + LG A + G +A LQ+++ N Sbjct: 293 RSRARLVPAELGGRAGVMGAIALALQEIADGN 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,753,200,312 Number of extensions: 72312241 Number of successful extensions: 184934 Number of sequences better than 1.0e-05: 3727 Number of HSP's gapped: 181718 Number of HSP's successfully gapped: 3727 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)