BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0011.p
         (128 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7U0.1 B3K7U0_9BACI Regulatory protein MarR                         100   5e-20
A9U6U3.1 A9U6U3_PHYPA Predicted protein                                90   6e-17
B0TBK0.1 B0TBK0_HELMI Transcriptional regulator, marr family           89   1e-16
B1D7K5.1 B1D7K5_9BACL Transcriptional regulator, MarR family           86   1e-15
Q97E33.1 Q97E33_CLOAB Transcriptional regulator, MarR/EmrR family      86   1e-15

>B3K7U0.1 B3K7U0_9BACI Regulatory protein MarR
          Length = 186

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 70/99 (70%)

Query: 17  GLKVSEISRFMGLTPPTVTQLINSLEAKQMVERLPDANDRRVVRIRLTEQGGIITRRAKE 76
           G+KVSEIS  M +T PT+TQ IN+LE+K +VER+ DA DRR VR++LTE+G  + ++  +
Sbjct: 81  GMKVSEISSMMNVTSPTITQFINALESKGLVERVMDAQDRRAVRVQLTEEGNRVVQQTYQ 140

Query: 77  HMNASLNKLVGYLGEAESDQLAELLLKVHRFVEDNPPPN 115
           ++  S N+LV +LGE +S +L ELL KV+ F E     N
Sbjct: 141 NVKNSFNELVDFLGEEDSVKLTELLTKVYHFHEQKRKTN 179


>A9U6U3.1 A9U6U3_PHYPA Predicted protein
          Length = 293

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%)

Query: 1   MTLLITIAKRSREGEEGLKVSEISRFMGLTPPTVTQLINSLEAKQMVERLPDANDRRVVR 60
           M L++ + +       GLKVSEIS  +G+T PTVTQ + +LE K+ + R PD  DRRVVR
Sbjct: 1   MGLMVLLMRHVEPDSPGLKVSEISGMLGVTSPTVTQFVKALEKKKWIVRTPDEADRRVVR 60

Query: 61  IRLTEQGGIITRRAKEHMNASLNKLVGYLGEAESDQLAELLLKVHRFVE 109
           I+L+E+G     +A++    S   LV +LG  ES++L+ELL K +++ E
Sbjct: 61  IKLSEEGREAIIQARKATIHSFKGLVDHLGIEESEKLSELLTKAYKYYE 109


>B0TBK0.1 B0TBK0_HELMI Transcriptional regulator, marr family
          Length = 162

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 69/115 (60%)

Query: 1   MTLLITIAKRSREGEEGLKVSEISRFMGLTPPTVTQLINSLEAKQMVERLPDANDRRVVR 60
           + +L  I K  + G  G+K SEIS+ + + PPTVTQLI  LEA+ +VER  D +DRR   
Sbjct: 36  IKVLFCIKKGRKPGSRGIKASEISQLLRVRPPTVTQLIKDLEARGLVERAIDRDDRRAAL 95

Query: 61  IRLTEQGGIITRRAKEHMNASLNKLVGYLGEAESDQLAELLLKVHRFVEDNPPPN 115
           I LT++G  +T+ A +   ++ + LV +LGE +S QLAELL +   +      P 
Sbjct: 96  IGLTQKGEKVTKAAADEFVSAFDGLVNHLGEVKSQQLAELLNEAFLYFATKEAPT 150


>B1D7K5.1 B1D7K5_9BACL Transcriptional regulator, MarR family
          Length = 162

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 4   LITIAKRSREGE-EGLKVSEISRFMGLTPPTVTQLINSLEAKQMVERLPDANDRRVVRIR 62
           L+ + KR   GE EG+KVS++S+F+ +T PTVTQL+N LE   +V R  D  DRR VR+ 
Sbjct: 41  LLVVIKRMGNGEDEGVKVSDLSKFLKVTSPTVTQLLNRLEEMGLVVRKEDPRDRRAVRVS 100

Query: 63  LTEQGGIITRRAKEHMNASLNKLVGYLGEAESDQLAELLLKVHRFVE 109
           LTE+G +  ++A +     +N LV +LG+ +++QL  LL K   + E
Sbjct: 101 LTEEGELTAKKALQGFMQRMNGLVDFLGDDDTEQLIRLLRKTTTYFE 147


>Q97E33.1 Q97E33_CLOAB Transcriptional regulator, MarR/EmrR family
          Length = 150

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 67/102 (65%)

Query: 1   MTLLITIAKRSREGEEGLKVSEISRFMGLTPPTVTQLINSLEAKQMVERLPDANDRRVVR 60
           M LL+ I K     E G+KVS++S+ + +  PTVTQ INS+E    VER  D NDRRVVR
Sbjct: 37  MMLLVCIQKSLEVEEGGVKVSQLSKRLKIASPTVTQQINSMEKNGFVERSMDLNDRRVVR 96

Query: 61  IRLTEQGGIITRRAKEHMNASLNKLVGYLGEAESDQLAELLL 102
           + +TE+G  + ++A+++    +  L+ Y+G  +S++ AELLL
Sbjct: 97  VHITEKGDELLKKAEKNFWKFIEGLIEYMGNEKSEKFAELLL 138


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 725,784,457
Number of extensions: 25295588
Number of successful extensions: 89344
Number of sequences better than 1.0e-05: 182
Number of HSP's gapped: 89617
Number of HSP's successfully gapped: 182
Length of query: 128
Length of database: 3,060,696,203
Length adjustment: 93
Effective length of query: 35
Effective length of database: 2,184,541,808
Effective search space: 76458963280
Effective search space used: 76458963280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)