BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0008.p (312 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7U7.1 B3K7U7_9BACI LysR substrate-binding 421 e-116 B1D7Z0.1 B1D7Z0_9BACL Transcriptional regulator, LysR family 377 e-103 B4AJN5.1 B4AJN5_BACPU Transcriptional regulator 373 e-101 A7ZA60.1 A7ZA60_BACA2 YwbI 370 e-101 A8FIR8.1 A8FIR8_BACP2 Transcriptional regulator 370 e-100 >B3K7U7.1 B3K7U7_9BACI LysR substrate-binding Length = 296 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/294 (67%), Positives = 238/294 (80%) Query: 6 MDIRQLQYFVQVARLNSFSRAAESLYISQPTISKMIRNLEVELGADLFYREGKSIRLTDA 65 MDIR L+YF++VAR SF++AAE LYI+QPTISK IRN+E E G LFYR+GK I LTDA Sbjct: 1 MDIRHLEYFLEVARNQSFTKAAEKLYITQPTISKTIRNMEDEWGVTLFYRQGKRIELTDA 60 Query: 66 GEILLTKAQNIVESFVSLSSELDSLRNLKQGHIRIGLPPMVGASFFPAVIGEFHRRYPDV 125 G+I+ +AQ +VESF +S+EL+ L NLK+GH+RIGLPPMVG+SFFP VIG+FHR YP + Sbjct: 61 GQIMYQQAQQMVESFQRVSAELEDLMNLKRGHLRIGLPPMVGSSFFPEVIGQFHREYPKI 120 Query: 126 TIRLHEDGAKKVEDDVETGLLDIGAIVLPVNTAIFHCFTFVEEKLELLVPAGHRLAGRAS 185 TI+L EDGAKKVE DVE+G DIG VLPVN +FH ++FV+EKL LL+ HRLAGR Sbjct: 121 TIQLIEDGAKKVEADVESGQTDIGVAVLPVNEDVFHYYSFVKEKLNLLLHPSHRLAGREH 180 Query: 186 VPLRELAEEEFVLFREDFALHDRIITECVKTGFQPKVVYESSQWDLISRMVEAGMGIALL 245 V L ELA+E FVLFREDF LHDRII ECV GF+P+VVYESSQWDLIS MV A +GIALL Sbjct: 181 VHLSELADEAFVLFREDFTLHDRIIRECVSAGFEPRVVYESSQWDLISGMVAANLGIALL 240 Query: 246 PETICRDIDRTRISVVSLTEPVIPWQLGMIWRRDRYLSFAAREWIHFAMGVLGE 299 PETIC++ID +R++++ L P IPWQLGMIWR+DRYLSFA REWI F +LGE Sbjct: 241 PETICKEIDSSRVTILPLDNPSIPWQLGMIWRKDRYLSFAVREWISFTRSLLGE 294 >B1D7Z0.1 B1D7Z0_9BACL Transcriptional regulator, LysR family Length = 295 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/294 (60%), Positives = 218/294 (74%) Query: 6 MDIRQLQYFVQVARLNSFSRAAESLYISQPTISKMIRNLEVELGADLFYREGKSIRLTDA 65 MDIR LQYFV+ AR SF++AA+SLYI+QPTISKMI+NLE ELG LF R GK I +TDA Sbjct: 1 MDIRHLQYFVEAARFQSFTKAAQSLYITQPTISKMIKNLEEELGVVLFERVGKKIVITDA 60 Query: 66 GEILLTKAQNIVESFVSLSSELDSLRNLKQGHIRIGLPPMVGASFFPAVIGEFHRRYPDV 125 G ILL +AQ +V+SF +++S L L LK GHIRIGLPPMVG +FFP +IG+F +YP + Sbjct: 61 GSILLEQAQQMVQSFGNMNSRLSELMELKVGHIRIGLPPMVGVTFFPRIIGKFREKYPKI 120 Query: 126 TIRLHEDGAKKVEDDVETGLLDIGAIVLPVNTAIFHCFTFVEEKLELLVPAGHRLAGRAS 185 T++L E GAKKVE DV +G LDIG I+LP N F F F+ + L L+VP H+LA R+ Sbjct: 121 TMQLFEHGAKKVEADVGSGALDIGVILLPTNDEKFESFCFLRQDLMLVVPPSHKLASRSE 180 Query: 186 VPLRELAEEEFVLFREDFALHDRIITECVKTGFQPKVVYESSQWDLISRMVEAGMGIALL 245 VPL EL EE F+ F E+F LHDRII EC K GFQP VV++S+QWD IS MV A +GIALL Sbjct: 181 VPLIELKEEPFLFFHEEFTLHDRIIAECEKLGFQPDVVFKSTQWDFISEMVAAKLGIALL 240 Query: 246 PETICRDIDRTRISVVSLTEPVIPWQLGMIWRRDRYLSFAAREWIHFAMGVLGE 299 PE ICR++D R+ ++ LT P IPW L MIWRRD Y SFA REWI FAM L + Sbjct: 241 PEAICRELDLERLRIIPLTSPSIPWHLAMIWRRDSYQSFATREWIAFAMEALQQ 294 >B4AJN5.1 B4AJN5_BACPU Transcriptional regulator Length = 295 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 168/285 (58%), Positives = 219/285 (76%), Gaps = 1/285 (0%) Query: 6 MDIRQLQYFVQVARLNSFSRAAESLYISQPTISKMIRNLEVELGADLFYREGKSIRLTDA 65 MDIR L YF++VARL SF++A++SLY+SQPTISKM++NLE ELG LFYR G+ + +TDA Sbjct: 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMVKNLEDELGVQLFYRNGRQVEMTDA 60 Query: 66 GEILLTKAQNIVESFVSLSSELDSLRNLKQGHIRIGLPPMVGASFFPAVIGEFHRRYPDV 125 G+ + T+A I +SF +L+SEL+ L N+K+GHIRIGLPPM+G+SFFP V+GEF ++YPDV Sbjct: 61 GQTMYTQASEITQSFQNLTSELNDLMNVKKGHIRIGLPPMIGSSFFPNVMGEFRQQYPDV 120 Query: 126 TIRLHEDGAKKVEDDVETGLLDIGAIVLPVNTAIFHCFTFVEEKLELLVPAGHRLAGRAS 185 T +L E G+ KVE+ VE G LDIG IVLP N IFH +T ++E ++L+ H +AGR Sbjct: 121 TFQLVEHGSIKVEEGVEDGSLDIGVIVLPANDKIFHTYTIIKEDMKLVTHPSHPMAGRDK 180 Query: 186 VPLRELAEEEFVLFREDFALHDRIITECVKTGFQPKVVYESSQWDLISRMVEAGMGIALL 245 V L +L EE F+ FREDF LH RI+ EC+ GF+P V+YE+SQWD IS MV +GI LL Sbjct: 181 VDLADLKEESFIFFREDFVLHSRILNECMNAGFRPNVIYETSQWDFISEMVAENLGIGLL 240 Query: 246 PETICRDIDRTRISVVSLTEPVIPWQLGMIWRRDRYLSFAAREWI 290 PE ICRD+D ++ V+SL IPW LG+IWR+DRYLSFAAREW+ Sbjct: 241 PERICRDLDPEKVKVISLNTS-IPWHLGVIWRKDRYLSFAAREWL 284 >A7ZA60.1 A7ZA60_BACA2 YwbI Length = 302 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 169/292 (57%), Positives = 215/292 (73%) Query: 6 MDIRQLQYFVQVARLNSFSRAAESLYISQPTISKMIRNLEVELGADLFYREGKSIRLTDA 65 MDIR L YF++VARL SF++A++SLY+SQPTISKMI+NLE ELG LFYR G+ + LTDA Sbjct: 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLETELGIKLFYRNGRQVELTDA 60 Query: 66 GEILLTKAQNIVESFVSLSSELDSLRNLKQGHIRIGLPPMVGASFFPAVIGEFHRRYPDV 125 G+ + +AQ I +SF +L+SEL+ + +K+GH+RIGLPPM+G+ FFP V+G+F YPDV Sbjct: 61 GQSMYVQAQEITKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRVTYPDV 120 Query: 126 TIRLHEDGAKKVEDDVETGLLDIGAIVLPVNTAIFHCFTFVEEKLELLVPAGHRLAGRAS 185 T +L EDG+ KV+ VE G LDIG +VLP N IFH FT V+E L L+V HRLA Sbjct: 121 TFQLVEDGSIKVQQGVEDGSLDIGVVVLPANEEIFHTFTIVKETLMLVVHPSHRLADEKE 180 Query: 186 VPLRELAEEEFVLFREDFALHDRIITECVKTGFQPKVVYESSQWDLISRMVEAGMGIALL 245 L EL EE F+ FREDF LH+RI+TECVK GF+P V+YE+SQWD IS MV A +GI LL Sbjct: 181 CSLHELKEEPFIFFREDFVLHNRIMTECVKAGFRPHVIYETSQWDFISEMVSANLGIGLL 240 Query: 246 PETICRDIDRTRISVVSLTEPVIPWQLGMIWRRDRYLSFAAREWIHFAMGVL 297 PE ICR +D ++ + L PVIPW L +IWR+DRY+SFAAR W+ L Sbjct: 241 PERICRGLDPDKVRTIPLVHPVIPWHLAIIWRKDRYMSFAARAWLEHTKSYL 292 >A8FIR8.1 A8FIR8_BACP2 Transcriptional regulator Length = 295 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 167/285 (58%), Positives = 218/285 (76%), Gaps = 1/285 (0%) Query: 6 MDIRQLQYFVQVARLNSFSRAAESLYISQPTISKMIRNLEVELGADLFYREGKSIRLTDA 65 MDIR L YF++VARL SF++A++SLY+SQPTISKM++NLE EL LFYR G+ + +TDA Sbjct: 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMVKNLEDELEVQLFYRNGRQVEMTDA 60 Query: 66 GEILLTKAQNIVESFVSLSSELDSLRNLKQGHIRIGLPPMVGASFFPAVIGEFHRRYPDV 125 G+ + T+A I +SF +L+SEL+ L N+K+GHIRIGLPPM+G+SFFP V+GEF ++YPDV Sbjct: 61 GQTMYTQASEITQSFQNLTSELNDLMNVKKGHIRIGLPPMIGSSFFPNVMGEFRQQYPDV 120 Query: 126 TIRLHEDGAKKVEDDVETGLLDIGAIVLPVNTAIFHCFTFVEEKLELLVPAGHRLAGRAS 185 T +L E G+ KVE+ VE G LDIG IVLP N IFH +T ++E ++L+ H +AGR Sbjct: 121 TFQLVEHGSIKVEEGVEDGSLDIGVIVLPANDKIFHTYTIIKEDMKLVTHPSHPMAGRDK 180 Query: 186 VPLRELAEEEFVLFREDFALHDRIITECVKTGFQPKVVYESSQWDLISRMVEAGMGIALL 245 V L +L EE F+ FREDF LH RI+ EC+ GF+P V+YE+SQWD IS MV +GI LL Sbjct: 181 VDLADLKEESFIFFREDFVLHSRILNECMNAGFRPNVIYETSQWDFISEMVAENLGIGLL 240 Query: 246 PETICRDIDRTRISVVSLTEPVIPWQLGMIWRRDRYLSFAAREWI 290 PE ICRD+D ++ V+SL IPW LG+IWR+DRYLSFAAREW+ Sbjct: 241 PERICRDLDPEKVKVISLNTS-IPWHLGVIWRKDRYLSFAAREWL 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,812,121,771 Number of extensions: 74582040 Number of successful extensions: 211161 Number of sequences better than 1.0e-05: 22926 Number of HSP's gapped: 196186 Number of HSP's successfully gapped: 22932 Length of query: 312 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 177 Effective length of database: 1,788,859,178 Effective search space: 316628074506 Effective search space used: 316628074506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)