BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0007.p
         (105 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P39591.1 CIDA_BACSU Holin-like protein cidA                           119   9e-26
B3K7U8.1 B3K7U8_9BACI LrgA family protein                             118   2e-25
A8FIR9.1 A8FIR9_BACP2 Murein hydrolase LrgA                           117   2e-25
A7ZA61.1 CIDA_BACA2 Holin-like protein cidA                           117   3e-25
B4AJN6.1 B4AJN6_BACPU Murein hydrolase LrgA                           117   4e-25

>P39591.1 CIDA_BACSU Holin-like protein cidA
          Length = 128

 Score =  119 bits (298), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query: 2   LVNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVM 61
           L+N +T  LHI IPGSIIG+++LF LL   II+L W+E GA+WLL ELLLFFIPSA+GV+
Sbjct: 20  LINWVTALLHINIPGSIIGIVILFTLLHFNIIKLEWIELGAAWLLGELLLFFIPSAVGVI 79

Query: 62  KYSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRES 105
           +Y  ++   G+ +L VVI+ TF VM S+G LT  I+K KE++ +
Sbjct: 80  EYGDIMSKFGVSILLVVIISTFVVMVSTGTLTQLIAKRKEKKHT 123


>B3K7U8.1 B3K7U8_9BACI LrgA family protein
          Length = 123

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 81/101 (80%)

Query: 3   VNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVMK 62
           ++ L  +L+I IPGSI+G++++F+LLE+ I+RL W+E GA+WLLAELLLFFIP+A+G+MK
Sbjct: 21  MDQLAAWLNIGIPGSILGIVVVFILLETKILRLEWIELGANWLLAELLLFFIPAAVGIMK 80

Query: 63  YSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERR 103
           Y  +LE++GLQ+LAVV+  T  VM SSGL  G IS  K R+
Sbjct: 81  YFPMLEAEGLQILAVVLFSTVIVMVSSGLTAGFISSRKGRK 121


>A8FIR9.1 A8FIR9_BACP2 Murein hydrolase LrgA
          Length = 127

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 78/103 (75%)

Query: 2   LVNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVM 61
           L+NVL  FLH+ IPG+I+G++++FLLL   II+L W+E GA WLL ELLLFFIPSA+GV+
Sbjct: 23  LMNVLAAFLHLRIPGTILGILVIFLLLHFKIIQLKWIELGAVWLLGELLLFFIPSAVGVI 82

Query: 62  KYSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRE 104
            Y  LL   G  ++ VV++ TF VM S+G++T  I+K KER++
Sbjct: 83  DYGTLLSQSGTSIVLVVLLSTFVVMLSTGIMTQMIAKRKERKK 125


>A7ZA61.1 CIDA_BACA2 Holin-like protein cidA
          Length = 128

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 79/104 (75%)

Query: 2   LVNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVM 61
           L+N +T  LHI IPGSIIG+++LF LL   II+L W+E GA+WLL ELLLFFIPSA+GV+
Sbjct: 20  LINWVTAALHINIPGSIIGIVILFTLLHFKIIKLEWIELGAAWLLGELLLFFIPSAVGVI 79

Query: 62  KYSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRES 105
           +Y  ++   G+ +L VV++ TF VM S+G LT  I+K KE++++
Sbjct: 80  EYGDIMSKFGVSILLVVVISTFVVMVSTGTLTQLIAKRKEKKQT 123


>B4AJN6.1 B4AJN6_BACPU Murein hydrolase LrgA
          Length = 127

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 78/103 (75%)

Query: 2   LVNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVM 61
           L+NVL  FLH+ IPG+I+G++++FLLL   II+L W+E GA WLL ELLLFFIPSA+GV+
Sbjct: 23  LMNVLAAFLHLRIPGTILGILVIFLLLHFKIIQLKWIELGAVWLLGELLLFFIPSAVGVI 82

Query: 62  KYSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRE 104
            Y  L+   G  ++ VV++ TF VM S+G++T  I+K KER++
Sbjct: 83  DYGTLISQSGTSIVLVVLLSTFVVMLSTGIMTQMIAKRKERKK 125


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 570,121,358
Number of extensions: 20486535
Number of successful extensions: 86001
Number of sequences better than 1.0e-05: 958
Number of HSP's gapped: 86038
Number of HSP's successfully gapped: 958
Length of query: 105
Length of database: 3,060,696,203
Length adjustment: 73
Effective length of query: 32
Effective length of database: 2,372,962,108
Effective search space: 75934787456
Effective search space used: 75934787456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)