BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0006.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7U9.1 B3K7U9_9BACI LrgB family protein 253 9e-66 P39590.2 YWBG_BACSU Uncharacterized protein ywbG 240 7e-62 A7ZA62.1 A7ZA62_BACA2 YwbG 237 7e-61 Q65DJ3.1 Q65DJ3_BACLD YwbG 236 1e-60 B4AJN7.1 B4AJN7_BACPU Membrane protein, putative 235 2e-60 >B3K7U9.1 B3K7U9_9BACI LrgB family protein Length = 229 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 163/210 (77%), Gaps = 1/210 (0%) Query: 18 AKRIYASSSKMYASXXXXXXXXXXXXXXXXXXXYESYNAGGKWLTDLLQPATIAFAIPLH 77 AKR+Y K+Y S YESYN G +W++ LL PATIAFA+PL+ Sbjct: 21 AKRLYRRLPKVYLSPLLITPVLIVVILTQTGVSYESYNEGAQWISKLLGPATIAFAVPLY 80 Query: 78 KNFKVLKKHAAEIAAGVLSGTVMAVLSSMLLAKWLHLSGDLATSLVPRSVTTPIAMSISQ 137 KNF+ LKKHAAEI VL+G+V+A+LSS LAKW+HL+ LATSLVPRS+TTPIAM++S+ Sbjct: 81 KNFQTLKKHAAEIMLSVLTGSVLAMLSSAFLAKWMHLNSSLATSLVPRSITTPIAMNVSE 140 Query: 138 SIGGVPSITAVFVILTGVLGTLMGPSVLRLFRIDNEIARGVSLGTAAHGTGTSKAFELSS 197 IGGVP++TAVFVI+TG+LG+++GP+V+R+FRI +IARGV GT+AHGTGTSKAFE SS Sbjct: 141 VIGGVPNMTAVFVIMTGILGSMIGPAVMRIFRIRGDIARGVLFGTSAHGTGTSKAFEFSS 200 Query: 198 LTGTISSIAMILTALLSIGLAPALLAVFLH 227 L+GTISSI+MI+ AL ++G AP +++ FL+ Sbjct: 201 LSGTISSISMIVAALFTLGTAPLIMS-FLY 229 >P39590.2 YWBG_BACSU Uncharacterized protein ywbG Length = 225 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 154/206 (74%) Query: 18 AKRIYASSSKMYASXXXXXXXXXXXXXXXXXXXYESYNAGGKWLTDLLQPATIAFAIPLH 77 AK++Y ++Y S YESYN GG LTD+LQPAT+AFAIPL+ Sbjct: 18 AKKVYQRFPRVYTSPLLVTPAVLVGLLLLVNVPYESYNLGGGLLTDMLQPATVAFAIPLY 77 Query: 78 KNFKVLKKHAAEIAAGVLSGTVMAVLSSMLLAKWLHLSGDLATSLVPRSVTTPIAMSISQ 137 K F VLKK+A EI V G+ +A++S+ L+AKWLHL L SLVPRSVTTPIAM++S+ Sbjct: 78 KYFPVLKKYAVEIILNVAVGSCIAIISTALIAKWLHLGTGLIDSLVPRSVTTPIAMNVSE 137 Query: 138 SIGGVPSITAVFVILTGVLGTLMGPSVLRLFRIDNEIARGVSLGTAAHGTGTSKAFELSS 197 IGG+P++TAVFVILT +LGT++GP V+R FRIDNEIARGV LGT+AHG GTSKAFELSS Sbjct: 138 MIGGMPAVTAVFVILTALLGTVIGPMVIRYFRIDNEIARGVLLGTSAHGAGTSKAFELSS 197 Query: 198 LTGTISSIAMILTALLSIGLAPALLA 223 ++GTISS++MIL A++++ AP LL+ Sbjct: 198 VSGTISSVSMILAAIMTLCAAPFLLS 223 >A7ZA62.1 A7ZA62_BACA2 YwbG Length = 226 Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 152/206 (73%) Query: 18 AKRIYASSSKMYASXXXXXXXXXXXXXXXXXXXYESYNAGGKWLTDLLQPATIAFAIPLH 77 AK++Y ++Y S Y++YN GG LTD+LQPAT+AFAIPL+ Sbjct: 18 AKKLYIRFPRVYTSPLLITPAVLVVLLLLVNVPYQTYNLGGGLLTDMLQPATVAFAIPLY 77 Query: 78 KNFKVLKKHAAEIAAGVLSGTVMAVLSSMLLAKWLHLSGDLATSLVPRSVTTPIAMSISQ 137 K F +LKK+A EI V G+ +A+LS+ +AKW HL L SLVPRSVTTPIAM++S+ Sbjct: 78 KYFPILKKYAVEIILNVAVGSCIAILSTAFIAKWFHLGSSLVDSLVPRSVTTPIAMNVSE 137 Query: 138 SIGGVPSITAVFVILTGVLGTLMGPSVLRLFRIDNEIARGVSLGTAAHGTGTSKAFELSS 197 IGG+P++TAVFVILT +LGT++GP V+R FRIDNEIARGV LGT+AHG GTSKAFELSS Sbjct: 138 MIGGMPAVTAVFVILTALLGTIIGPMVIRYFRIDNEIARGVLLGTSAHGAGTSKAFELSS 197 Query: 198 LTGTISSIAMILTALLSIGLAPALLA 223 ++GTISS++MIL A++++ AP LL+ Sbjct: 198 VSGTISSVSMILAAIMTLCAAPILLS 223 >Q65DJ3.1 Q65DJ3_BACLD YwbG Length = 227 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 153/206 (74%) Query: 18 AKRIYASSSKMYASXXXXXXXXXXXXXXXXXXXYESYNAGGKWLTDLLQPATIAFAIPLH 77 AK +Y+ K+YAS +E+YNAGG+ LTD+LQPAT+AFAIPL+ Sbjct: 18 AKAVYSRHPKVYASPLLVTPVILVGLLLFINVPFEAYNAGGRLLTDMLQPATVAFAIPLY 77 Query: 78 KNFKVLKKHAAEIAAGVLSGTVMAVLSSMLLAKWLHLSGDLATSLVPRSVTTPIAMSISQ 137 K F VLKK+A EI V G +A+LS+ +AK L+ DL SLVPRSVTTPIAM++S+ Sbjct: 78 KYFPVLKKYAVEIIINVAVGCCIAILSTAFIAKLFKLNEDLIESLVPRSVTTPIAMNVSE 137 Query: 138 SIGGVPSITAVFVILTGVLGTLMGPSVLRLFRIDNEIARGVSLGTAAHGTGTSKAFELSS 197 IGG+P++TAVFVILT + G+++GP V+R FRIDNEIARGV LGT+AHG GTSKAFELSS Sbjct: 138 MIGGMPAVTAVFVILTALFGSVIGPMVIRYFRIDNEIARGVLLGTSAHGAGTSKAFELSS 197 Query: 198 LTGTISSIAMILTALLSIGLAPALLA 223 ++GTISS++MIL A++++ AP L++ Sbjct: 198 VSGTISSVSMILAAIITLCAAPFLIS 223 >B4AJN7.1 B4AJN7_BACPU Membrane protein, putative Length = 226 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 152/206 (73%) Query: 18 AKRIYASSSKMYASXXXXXXXXXXXXXXXXXXXYESYNAGGKWLTDLLQPATIAFAIPLH 77 +K +Y K+Y S Y++YN GGKWLT++LQPAT+AFAIPL+ Sbjct: 18 SKAVYKRHPKVYVSPLLVTPLALVVFLLIVNIPYDAYNQGGKWLTNMLQPATVAFAIPLY 77 Query: 78 KNFKVLKKHAAEIAAGVLSGTVMAVLSSMLLAKWLHLSGDLATSLVPRSVTTPIAMSISQ 137 K F +LKKHAAEI V G+V+A+LS+ +AK HL L SLVPRSVTTP+AMS+S+ Sbjct: 78 KYFHILKKHAAEIILNVACGSVIAILSTAFIAKLFHLDTGLIESLVPRSVTTPVAMSVSE 137 Query: 138 SIGGVPSITAVFVILTGVLGTLMGPSVLRLFRIDNEIARGVSLGTAAHGTGTSKAFELSS 197 IGG+PS+TAVFVILT + G+++GP ++R FRIDN+IA GV LGT AHG GTSKAFE+SS Sbjct: 138 MIGGMPSVTAVFVILTALFGSIIGPMIIRYFRIDNDIAMGVLLGTGAHGAGTSKAFEMSS 197 Query: 198 LTGTISSIAMILTALLSIGLAPALLA 223 ++GTISS++MIL+A++++ AP L++ Sbjct: 198 VSGTISSVSMILSAIITLCAAPLLMS 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 989,681,730 Number of extensions: 34026845 Number of successful extensions: 132201 Number of sequences better than 1.0e-05: 1159 Number of HSP's gapped: 132011 Number of HSP's successfully gapped: 1159 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)