BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0005.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5H0.1 B1D5H0_9BACL Oxidoreductase domain protein 368 e-100 B3KJ60.1 B3KJ60_9BACI Oxidoreductase domain protein 360 1e-97 A6UL82.1 A6UL82_SINMW Glycosyl transferase group 1 222 4e-56 B0J072.1 B0J072_RHILT Glycosyl transferase group 1 218 9e-55 C0UCF8.1 C0UCF8_9ACTO Predicted dehydrogenase 185 4e-45 >B1D5H0.1 B1D5H0_9BACL Oxidoreductase domain protein Length = 323 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 224/323 (69%), Gaps = 2/323 (0%) Query: 1 MTLNIGIVGTGWFSKVHADLLAGMEDVKLQAVCGSSKQKGEDMASPYG-AEGYGDITEML 59 MTL IGI GTGWF ++HA+ LA ++ V + A CG+S +K E A PY A GY I ML Sbjct: 1 MTLRIGIAGTGWFGRMHAEKLAALDGVSVSAFCGTSLEKAETAARPYSDARGYDTIEAML 60 Query: 60 DARKLDAVYICVPPQSHGAIERALIRREIPFFVEKPLGSSTEIPASLLQDIKEHGLLTSV 119 + RKLDAVYIC PP +HG IE AL R IPF VEKP+G E P+ + Q I + GL+TSV Sbjct: 61 EDRKLDAVYICTPPFAHGEIELALAERGIPFLVEKPIGVDEETPSRIRQAIADKGLITSV 120 Query: 120 GYHFRYQENIARLKKLLSGDKVGMIVGQWMGSMPGVAWWRDQEQSGGQFTEQTTHIVDLL 179 GYHFRY ++ K+LL+ M +GQWMGSMPGV WWR E SGGQF EQTTHIVDL Sbjct: 121 GYHFRYMDSTNHAKELLADRTPLMALGQWMGSMPGVYWWRKMETSGGQFVEQTTHIVDLT 180 Query: 180 RYLGGEVTEVYGMFGNRIVHEQHEGVTVADVGTVSLKLDNGIVANISNTCVLPGEVGQVG 239 RYL GEV EVY +G+R + + EGVTV DVGTV++KL +G VA ISNTC +P G G Sbjct: 181 RYLLGEVNEVYAAYGSRHMAQIEEGVTVPDVGTVTIKLASGAVATISNTCAIPAG-GHAG 239 Query: 240 LSFYNDKGLLDWNPDRLMEVRSGDSKEYVSSGNPYAAESEAFLHAVRTGDRSRILSDYED 299 L Y + G+L + L ++ + EY SS NPY E+EAFLHAVRTGD S+ILS YED Sbjct: 240 LQIYTNTGVLQITGEALADIEADKKTEYKSSNNPYVRENEAFLHAVRTGDSSQILSTYED 299 Query: 300 GYKTLKVTCAAYESAKSGLPVKL 322 ++T +VT AA ESA++GLPVKL Sbjct: 300 AWETHRVTMAANESARTGLPVKL 322 >B3KJ60.1 B3KJ60_9BACI Oxidoreductase domain protein Length = 324 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/323 (53%), Positives = 228/323 (70%), Gaps = 2/323 (0%) Query: 1 MTLNIGIVGTGWFSKVHADLLAGMEDVKLQAVCGSSKQKGEDMASPY-GAEGYGDITEML 59 M NIG++GTGWFS+VHAD+L+ M+ V + A G+S++K E Y GA+ Y ++ +ML Sbjct: 1 MAFNIGMIGTGWFSRVHADILSNMDGVNVAAFVGTSQEKAEQAVRGYAGAKAYSNVEQML 60 Query: 60 DARKLDAVYICVPPQSHGAIERALIRREIPFFVEKPLGSSTEIPASLLQDIKEHGLLTSV 119 DA K DAVYI VPP +HG IE + R IPF VEKPLG++ + P +L ++K+ GL+TS Sbjct: 61 DATKPDAVYILVPPFAHGEIEAQVAERGIPFLVEKPLGTNLDTPRQILHEVKKAGLITSA 120 Query: 120 GYHFRYQENIARLKKLLSGDKVGMIVGQWMGSMPGVAWWRDQEQSGGQFTEQTTHIVDLL 179 GYHFRY + + +LL G K+GM +G W+G MP V WWR QE SGGQF EQTTH+VDLL Sbjct: 121 GYHFRYTDAAIKAAELLEGRKIGMALGYWLGDMPQVYWWRQQEGSGGQFIEQTTHMVDLL 180 Query: 180 RYLGGEVTEVYGMFGNRIVHEQHEGVTVADVGTVSLKLDNGIVANISNTCVLPGEVGQVG 239 R L GE EVY F +R + + HEGVTV DVGT +LKL +G VA ISNTC+LP E + G Sbjct: 181 RCLLGEADEVYAAFAHRAMKDVHEGVTVHDVGTATLKLKSGAVATISNTCMLP-ESDRAG 239 Query: 240 LSFYNDKGLLDWNPDRLMEVRSGDSKEYVSSGNPYAAESEAFLHAVRTGDRSRILSDYED 299 L Y ++G++ D+L+ G + EY + NPY ESEAF+HAVRTGD S ILS YED Sbjct: 240 LDIYTEQGIIGIQSDKLIVKEKGRTTEYRNRANPYLRESEAFIHAVRTGDASGILSSYED 299 Query: 300 GYKTLKVTCAAYESAKSGLPVKL 322 +KT+++T AA +SA++G+PVK+ Sbjct: 300 AFKTMEITFAALQSAETGVPVKI 322 >A6UL82.1 A6UL82_SINMW Glycosyl transferase group 1 Length = 1080 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 183/320 (57%), Gaps = 5/320 (1%) Query: 4 NIGIVGTGWFSKVHADLLAGMEDVKLQAVCGSSKQKGEDMASPYGAEGYGDITEMLDARK 63 +G +G G + H D+ AG EDV L A + E AS +GA+ + + ML+ Sbjct: 374 RVGFIGVGGIAHRHLDIFAGFEDVALVAFADPDFARAEHAASRFGAKAFESHSAMLEKEA 433 Query: 64 LDAVYICVPPQSHGAIERALIRREIPFFVEKPLGSSTEIPASLLQDIKEHGLLTSVGYHF 123 LDAVYIC+PP +HG ER LI R IPFFVEKP+ E+ L I+ L+T+VGYH+ Sbjct: 434 LDAVYICIPPFAHGDAERDLIARGIPFFVEKPITLDIELAEELCAAIEAAKLITAVGYHW 493 Query: 124 RYQENIARLKKLLSGDKVGMIVGQWMGSMPGVAWWRDQEQSGGQFTEQTTHIVDLLRYLG 183 R + + ++LL+ + ++ G W+ P WW ++SGGQ EQ THI+DL RYL Sbjct: 494 RNLDTVEEARRLLAENPAQLLSGYWLDQTPPPQWWWKNDRSGGQMVEQATHIIDLARYLI 553 Query: 184 GEVTEVYGMFGNRIVHEQHEGVTVADVGTVSLKLDNGIVANISNTCVLPGEVGQVGLSFY 243 GEVT+VYG G + + G+ V V T SL +G++ NIS+TC+L G +VGL+ + Sbjct: 554 GEVTDVYGRVGFKD-RPEFPGLDVPAVTTASLTFQSGVIGNISSTCLL-GWSHRVGLNIF 611 Query: 244 NDKGLLDW-NPDRLMEVRSGDSKEYVSSGNPYAAESEAFLHAVRTGDRSRILSDYEDGYK 302 D+ ++ + D +++V +G + + G+P E F+ AVR G+ + I Y D Sbjct: 612 ADRLAIELTDHDIMIDVGAGRPVRH-AQGDPVWREDRDFVDAVRGGN-NNIRCAYADALA 669 Query: 303 TLKVTCAAYESAKSGLPVKL 322 T ++ A SA+SG P+KL Sbjct: 670 THRLALAVASSARSGEPIKL 689 >B0J072.1 B0J072_RHILT Glycosyl transferase group 1 Length = 1057 Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 181/320 (56%), Gaps = 5/320 (1%) Query: 4 NIGIVGTGWFSKVHADLLAGMEDVKLQAVCGSSKQKGEDMASPYGAEGYGDITEMLDARK 63 +G +G G + H D+L G +DV+L A + + A +GA + EMLD ++ Sbjct: 351 RLGFIGVGGIAHRHLDILTGFDDVELVAFADLDLPRADAAAMRFGARSFSHHREMLDTQR 410 Query: 64 LDAVYICVPPQSHGAIERALIRREIPFFVEKPLGSSTEIPASLLQDIKEHGLLTSVGYHF 123 LDAVYIC+PP +HG E+ LI R IPFFVEKP+ + + + + L+T VGYH+ Sbjct: 411 LDAVYICIPPFAHGEPEQDLIDRNIPFFVEKPVTLDLALAEEIAAGVSKASLITGVGYHW 470 Query: 124 RYQENIARLKKLLSGDKVGMIVGQWMGSMPGVAWWRDQEQSGGQFTEQTTHIVDLLRYLG 183 RY + + + LL+ + ++ G W+ S P WW ++QSGGQ EQ TH++DL R+L Sbjct: 471 RYLDIVDEARSLLADNPAQLLSGYWLDSTPPPQWWWKKDQSGGQMVEQATHLLDLARFLV 530 Query: 184 GEVTEVYGMFGNRIVHEQHEGVTVADVGTVSLKLDNGIVANISNTCVLPGEVGQVGLSFY 243 GEVT+VYG G + + G+ V V T SL + G+VANI+ +C+L G +VGL + Sbjct: 531 GEVTDVYGRAGYK-ERVEFPGLDVPTVTTASLTFETGVVANIAASCLL-GWSHRVGLHIF 588 Query: 244 NDKGLLDWNPDRLMEVRSGDSKEYVSS-GNPYAAESEAFLHAVRTGDRSRILSDYEDGYK 302 D+ ++ DR + V G + S+ G+P E F+ AVR G+ +RI Y D Sbjct: 589 ADRLAIELT-DRDIMVDVGRGRPVRSADGDPVWREDRDFIDAVRGGE-NRIRCPYGDALA 646 Query: 303 TLKVTCAAYESAKSGLPVKL 322 T ++ A SA+SG PV L Sbjct: 647 THRLAVAVVSSARSGEPVHL 666 >C0UCF8.1 C0UCF8_9ACTO Predicted dehydrogenase Length = 316 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 168/307 (54%), Gaps = 8/307 (2%) Query: 1 MTLNIGIVGTGWFSKVHADLLAGMEDVKLQAVCGSSKQKGEDMASPYGAEGYGDITEMLD 60 MT IG+VG G+ + H D L +E V++ V + E +A+ GA Y ++LD Sbjct: 1 MTTRIGLVGAGFIAGRHLDALTAIEGVRVAGVADPRADRAEVLAARAGAAAYAHWQDLLD 60 Query: 61 ARKLDAVYICVPPQSHGAIERALIRREIPFFVEKPLGSSTEIPASLLQDIKEHGLLTSVG 120 +LDA+Y+CVPP +HG E A I R +P FVEKPL + +L I GLLTSVG Sbjct: 61 VERLDALYVCVPPHAHGEAESAAIERGLPLFVEKPLATDLPTAEALADRIDGAGLLTSVG 120 Query: 121 YHFRYQENIARLKKLLSGDKVGMIVGQWMGSMPGVAWWRDQEQSGGQFTEQTTHIVDLLR 180 YH+RY + + ++LL+ M++G W+ P V WW Q+ SGGQ EQ TH+ D+ R Sbjct: 121 YHWRYLDTLETARELLAEAPARMVLGAWLDKAPRVDWWARQDGSGGQTVEQATHLFDVAR 180 Query: 181 YLGGEVTEVYGMFGNRIVHEQHEGVTVADVGTVSLKLDNGIVANISNTCVLPGEVGQVGL 240 L GEV + G+R Q G + DV T +L+ +G V + SN+C+LP ++G+ Sbjct: 181 VLVGEVEGGWAT-GSR--SAQGPG-DILDVCTAALRFSSGAVGSFSNSCLLP-RAQRIGV 235 Query: 241 SFYNDKGLLDWNPDRLMEVRSGDSKEYVSSG-NPYAAESEAFLHAVRTGDRSRILSDYED 299 GL W + + V D + V G +P+AAE AF+ AVR G+ + + Y + Sbjct: 236 ELVA-PGLGLWLTEHQLVVTDADGERTVHRGVDPFAAEDRAFVAAVR-GEGDDVRTSYRE 293 Query: 300 GYKTLKV 306 +T ++ Sbjct: 294 ALRTHRL 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,013,586,596 Number of extensions: 85941192 Number of successful extensions: 217111 Number of sequences better than 1.0e-05: 2096 Number of HSP's gapped: 216253 Number of HSP's successfully gapped: 2096 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)