BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0002.p
         (128 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7GEX0.1 B7GEX0_ANOFW Transcriptional regulator, MarR family           86   9e-16
C2ZJT6.1 C2ZJT6_BACCE Transcriptional regulator, MarR                  75   2e-12
C2Z384.1 C2Z384_BACCE Transcriptional regulator, MarR                  75   2e-12
C3A1E4.1 C3A1E4_BACMY Transcriptional regulator, MarR                  74   4e-12
A9VEU2.1 A9VEU2_BACWK Transcriptional regulator, MarR family           74   5e-12

>B7GEX0.1 B7GEX0_ANOFW Transcriptional regulator, MarR family
          Length = 149

 Score = 86.3 bits (212), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 6   RKIASQMSLHREIGLTVPQFGLLRMIAQEQNARVIQLADKMEVKSSAVTVMLDRLELLGL 65
           RK+A+ ++   EIGLT PQF +L ++++     V +LAD+M VK SA+T M+DRL   G 
Sbjct: 24  RKLAADLA-KEEIGLTKPQFFILNLLSKRGKCTVSELADEMFVKPSAITTMIDRLYKSGF 82

Query: 66  SAREQDEHDRRAVIVTLTDKGEKLLEEGKNRFLLLLSEYLAILQPEELQNF 116
             R++DE DRR V V L++KG ++LE  +     ++  YL+ LQ +EL+ F
Sbjct: 83  VLRDRDEEDRRVVYVQLSEKGREMLEHARAERRKIIERYLSQLQFDELEQF 133


>C2ZJT6.1 C2ZJT6_BACCE Transcriptional regulator, MarR
          Length = 152

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 19  GLTVPQFGLLRMIAQEQNARVIQLADKMEVKSSAVTVMLDRLELLGLSAREQDEHDRRAV 78
           GLT PQF +L+++     +R  QLA+KM VK SA+TVM+DRL   GL  R  D++DRR V
Sbjct: 34  GLTPPQFYILKILDHYGASRATQLAEKMYVKPSAITVMIDRLIDHGLVERYHDDNDRRVV 93

Query: 79  IVTLTDKGEKLLEEG 93
           I+ LT KG+  +EE 
Sbjct: 94  IIELTKKGKTTVEEA 108


>C2Z384.1 C2Z384_BACCE Transcriptional regulator, MarR
          Length = 152

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 19  GLTVPQFGLLRMIAQEQNARVIQLADKMEVKSSAVTVMLDRLELLGLSAREQDEHDRRAV 78
           GLT PQF +L+++     +R  QLA+KM VK SA+TVM+DRL   GL  R  D++DRR V
Sbjct: 34  GLTPPQFYILKILDHYGASRATQLAEKMYVKPSAITVMIDRLIDHGLVERYHDDNDRRVV 93

Query: 79  IVTLTDKGEKLLEEG 93
           I+ LT KG+  +EE 
Sbjct: 94  IIELTKKGKTTVEEA 108


>C3A1E4.1 C3A1E4_BACMY Transcriptional regulator, MarR
          Length = 152

 Score = 73.9 bits (180), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%)

Query: 19  GLTVPQFGLLRMIAQEQNARVIQLADKMEVKSSAVTVMLDRLELLGLSAREQDEHDRRAV 78
           GLT PQF +L+++     +R  QLA+KM VK SA+TVM DRL   GL  R  D++DRR V
Sbjct: 34  GLTPPQFYILKILDHYGASRATQLAEKMYVKPSAITVMTDRLIDHGLVERYHDDNDRRVV 93

Query: 79  IVTLTDKGEKLLEEG 93
           ++ LT KG+  +EE 
Sbjct: 94  VIELTKKGKSTVEEA 108


>A9VEU2.1 A9VEU2_BACWK Transcriptional regulator, MarR family
          Length = 155

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%)

Query: 19  GLTVPQFGLLRMIAQEQNARVIQLADKMEVKSSAVTVMLDRLELLGLSAREQDEHDRRAV 78
           GLT PQF +L+++     +R  QLA+KM VK SA+TVM DRL   GL  R  D++DRR V
Sbjct: 34  GLTPPQFYILKILDHYGASRATQLAEKMYVKPSAITVMTDRLIDHGLVERYHDDNDRRVV 93

Query: 79  IVTLTDKGEKLLEEG 93
           ++ LT KG+  +EE 
Sbjct: 94  VIELTKKGKTTVEEA 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 640,757,443
Number of extensions: 21409174
Number of successful extensions: 87801
Number of sequences better than 1.0e-05: 474
Number of HSP's gapped: 88262
Number of HSP's successfully gapped: 474
Length of query: 128
Length of database: 3,060,696,203
Length adjustment: 93
Effective length of query: 35
Effective length of database: 2,184,541,808
Effective search space: 76458963280
Effective search space used: 76458963280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)