BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0001.p (555 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HRU3.1 B1HRU3_LYSSC Methyl-accepting chemotaxis protein 209 7e-52 C0Z4W3.1 C0Z4W3_BREBN Putative methyl-accepting chemotaxis protein 196 6e-48 B1DA11.1 B1DA11_9BACL Methyl-accepting chemotaxis sensory transd... 191 2e-46 C0Z8A3.1 C0Z8A3_BREBN Probable methyl-accepting chemotaxis protein 188 1e-45 Q9K632.1 Q9K632_BACHD Methyl-accepting chemotaxis protein 182 8e-44 >B1HRU3.1 B1HRU3_LYSSC Methyl-accepting chemotaxis protein Length = 571 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 145/542 (26%), Positives = 248/542 (45%), Gaps = 2/542 (0%) Query: 15 FFGYRAAYHQVDEAAGIELVGCANITTGLIDPADITALVNGDSSKVSAIEERIGWIVAHK 74 F Y AY+++ +AAG+E GCANITTGL+ P + + GD + I + W HK Sbjct: 28 FATYITAYNKLYDAAGVEAYGCANITTGLLSPEQMDKAMRGDQAARERIGNDLNWTTGHK 87 Query: 75 PIFKEAFILSLDGKILAADTSLKKRGYKAGDDFYFTEEDKAMITTMKHSAYSKVYTYQGT 134 IF+ +ILSLDG +LA D L ++G+ GD FY +E + KH YS+ YT+ G Sbjct: 88 DIFQTQYILSLDGTLLALDDHLAEKGFAPGDSFYLDKEAIDRLLQDKHPTYSQPYTFAGM 147 Query: 135 SLKTGYGPIYQDHDPTKPIIALMAINFDGPLIQERTLDIIVQPFXXXXXXXXXXXXXXXX 194 +GY P+++DHD +K IIA+ I+FD +++ERT D++ Sbjct: 148 DRLSGYAPVFKDHDSSKEIIAISVIDFDANIVKERTWDVVRSGILISIFPVLIASIITGF 207 Query: 195 XXRRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVND 254 RR V P++ L IA G+L NSKDE+ LA+ N M SL+ +I + Sbjct: 208 LIRRKVKPISVLIQQAKEIANGNLAVAETKINSKDEVEDLAKTLNRMTASLQSMIMTMRS 267 Query: 255 TS-MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFIT 313 TS L TN E + N+ E+ + E + + + +++ + Sbjct: 268 TSNTLANNADETACTLNDMTNTIQEVAHNIE-EVTSTVTAGMHHAENATEVLTSLAKDLQ 326 Query: 314 EIAGNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIEN 373 I NA + A + A G + + + + ++ + L + + +I+ Sbjct: 327 VIQNNATDSAHNARETMKLATDGERLAKDINNDMASIQSGSDEVKHTVENLVTSAAKIQA 386 Query: 374 IVGTISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSL 433 I +I+S FA+VA VRKLAE+S A Q+ +L+ Sbjct: 387 ITTSIASIASQTNLLALNASIEAARAGEHGKGFAIVAEEVRKLAEQSNAEVLQVEQLIQD 446 Query: 434 IISQMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLI 493 ++ + + +T+ +E+G E + +S I ++V+ + IS V Sbjct: 447 MLKHVQQVMSSTNDNTQYIEKGTETVGLTAQSLGNISSAVAKTVEEIISISHAVTAENEK 506 Query: 494 AGGLVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERF 553 + +V+ IQ++ E ++ +Q+ A+++EV S+ + +A L+ V+ F Sbjct: 507 SAQIVQMIQQLTESIRDIEEAMNRITLAAQQTTASIDEVAQSSNETTHMAHTLEQHVKAF 566 Query: 554 KV 555 K+ Sbjct: 567 KL 568 >C0Z4W3.1 C0Z4W3_BREBN Putative methyl-accepting chemotaxis protein Length = 575 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 194/354 (54%) Query: 202 PLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTSMLVXX 261 P+ +L + +A GDL EPL+ S+DEI LA FN+M SL +I QV TS V Sbjct: 222 PILRLMEEMKKVADGDLRVEPLVVKSRDEILDLANSFNEMTSSLTTVIRQVGGTSDQVAA 281 Query: 262 XXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIAGNADS 321 T+RA E A E+A G Q+ +E +++ DMSR I +IA NA Sbjct: 282 SAEQLTASADQTSRATEQIAVTVQEVAAGVDRQVASVENGSKSIDDMSRGIRQIANNAQQ 341 Query: 322 AKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVGTISSX 381 + + A A G QS+ + Q+ + +S+ +LS ++ LG+HS+ I I+ I+ Sbjct: 342 TSNMVSEVANMAGEGNQSIQAAVQQMNAIHDSMRELSSVVDGLGNHSQAIGEIIEVITGI 401 Query: 382 XXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIISQMDNA 441 FAVVA VRKLAE+SA SA +I +L+S I + A Sbjct: 402 ADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEQSAQSAQKIAQLISTIQTDTKVA 461 Query: 442 GETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGGLVESI 501 E+M+ T E+++G ++ AG +F +I+ S+ ++ Q +S + +E+ + +V+++ Sbjct: 462 VESMETGTREVQEGIRVVHRAGETFGQIQNSIGTVADQIHDVSASAQEVSAHSEQVVQAM 521 Query: 502 QKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 + + VSN TA+G +SA +Q+QLA+MEE+ SSA LS++AE+LQ ++ RFKV Sbjct: 522 ELVSEVSNLTADGTQNVSAATQQQLASMEEIASSATALSNMAEELQHMIRRFKV 575 >B1DA11.1 B1DA11_9BACL Methyl-accepting chemotaxis sensory transducer Length = 678 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/359 (33%), Positives = 203/359 (56%), Gaps = 1/359 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R ++ PL L+ + TI +GDL+ + SKDE G L FN M SLR I+++V+ +S Sbjct: 321 RSIMRPLKALTETTQTIRQGDLSKR-VSLTSKDEFGELGTTFNTMVDSLRSIVSEVSHSS 379 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 + T A EH A+ ++A+GA Q+ +E + + ++D++ IT IA Sbjct: 380 HQMIASSEQLSVSADQTAAATEHIASTIEDMADGAEQQVDIIEDNARTIRDVTGAITHIA 439 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 A +A DT + + K+ G Q++ + Q+G ++ S+ L+D+IA L S+E+ I+ Sbjct: 440 ARAQTAADTTSQVSAKSSEGGQAVQNAVRQMGHINHSVKSLADVIARLVDTSREVGQIIE 499 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 IS FAVVAG VRKLAE+S+ S ++ L++ I Sbjct: 500 AISDISQRTNLLALNAAIEAARAGEQGLGFAVVAGEVRKLAEQSSKSTEKVAALIAAIRG 559 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 ++ NA +M+ + E+ +G +I +AGR F+EIE +V +++SQ ++S ++ Sbjct: 560 EIGNADASMQAAAGEVSEGVTVIRTAGRLFAEIEHAVGEVNSQVHEVSTAAEQIASGTKQ 619 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 +V++I+ I VS TA+GA T+SA +Q+QLA+ME++ SSA L+ +AE+LQ V++FK+ Sbjct: 620 VVKAIEDISAVSQSTADGAQTVSAATQQQLASMEDISSSAAHLTRMAEELQANVDKFKL 678 >C0Z8A3.1 C0Z8A3_BREBN Probable methyl-accepting chemotaxis protein Length = 662 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 123/359 (34%), Positives = 203/359 (56%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R++ P+ +++ N I+ G+LT +PL +KDE+G L++ N M L+LR II QVNDT+ Sbjct: 304 RQISRPIAAVASVANRISEGELTVQPLQIRTKDEVGQLSQSVNTMVLNLRTIIQQVNDTA 363 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 + T++A E A E+A GA Q+K +E S A+Q +S ++A Sbjct: 364 SDLASSAEELSVNADHTSKATEQIAITIQEVAYGAEKQVKSVEESVTAIQGVSTGAQQVA 423 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 NA A ++A +Q A G Q+L SQ+ + ++ +++DI+ LG+ S+EI IV Sbjct: 424 TNAQQAAESAMGASQIAVEGNQALQVVISQMQSIENTVGNIADIVKRLGNSSQEIGQIVQ 483 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I++ FAVVA VRKLAE+SA SA QI L++ I Sbjct: 484 VITAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAEQSAESAQQIKLLITTIQL 543 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + + A +M++ T+E+ G ++ +AG+SF +I+ +V+ ++SQ Q++ ++ Sbjct: 544 ESNQAVLSMEQGTKEVATGLTVVNNAGKSFEQIQDAVTQVASQIQEVKAYSEQMSFGTKQ 603 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 +VE + I V+ +A+G ++SA ++EQLAAMEEV SS+ L+ +AE+LQ V +FK+ Sbjct: 604 VVELVSVIEEVAENSADGTQSVSAATEEQLAAMEEVSSSSTSLARIAEELQSHVSKFKI 662 >Q9K632.1 Q9K632_BACHD Methyl-accepting chemotaxis protein Length = 579 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 199/359 (55%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R +V P+ +S + IA G+LT EPL ++DEIG LA FN M +LR II +V + + Sbjct: 221 RMVVKPVVMVSEAAKVIAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKIILEVGNNA 280 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V T++ E + + +G Q++ +E +++ V DMS I +IA Sbjct: 281 EQVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSEDIRKIA 340 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 NA T+ ++K+ G+Q +++ Q+ ++++S+ L +II + +SKEI IV Sbjct: 341 ENAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKEINQIVK 400 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I+ F+VVA VRKLAE+++ SA QI L+S + Sbjct: 401 VITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNLISNVQK 460 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + D A ++M+ +TEE+ G L +AG SF I +VS+++ Q Q +S++V+++ Sbjct: 461 ETDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKVATGTRQ 520 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 +VE+I + VS +A+G ++A+++EQ+A MEEV +++ L+ +AE+LQ L+ RFKV Sbjct: 521 MVETIDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQELIGRFKV 579 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,405,925,020 Number of extensions: 82329122 Number of successful extensions: 273659 Number of sequences better than 1.0e-05: 8299 Number of HSP's gapped: 255185 Number of HSP's successfully gapped: 8330 Length of query: 555 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 414 Effective length of database: 1,732,333,088 Effective search space: 717185898432 Effective search space used: 717185898432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)