BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0005.p (171 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFK4.1 B3KFK4_9BACI Anaerobic ribonucleoside-triphosphate redu... 196 4e-49 C1SFI6.1 C1SFI6_9ACTN Ribonucleoside-triphosphate reductase clas... 150 4e-35 C3QX91.1 C3QX91_9BACE Anaerobic ribonucleoside-triphosphate redu... 148 2e-34 A7LUC7.1 A7LUC7_BACOV Putative uncharacterized protein 148 2e-34 A5ZLJ2.1 A5ZLJ2_9BACE Putative uncharacterized protein 145 1e-33 >B3KFK4.1 B3KFK4_9BACI Anaerobic ribonucleoside-triphosphate reductase activating protein Length = 167 Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 90/158 (56%), Positives = 114/158 (72%), Gaps = 2/158 (1%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN+CGY PESINEG G+RAVLF+SGCRH C GCFN +W+F GEPFT E I+ ++ Sbjct: 1 MNVCGYIPESINEGPGLRAVLFVSGCRHACAGCFNTDSWDFEAGEPFTEEMSAAILQDIL 60 Query: 61 ANPLLDGLTLAGGDPFFSAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPEWNL 120 NPLLDG+TL GGDPFFS EE F++ LR++ P +VW YTG+T+E L P E L Sbjct: 61 DNPLLDGVTLCGGDPFFSPEECTAFVRRLRTLCPAKNVWAYTGFTFEALIRQPKLRELAL 120 Query: 121 LALCQVVIDGRFVEELKDTTLPYRGSSNQRIIDIQASL 158 LC V++DG+F E +D +LP+RGSSNQR ID+ AS+ Sbjct: 121 --LCDVIVDGKFELERRDVSLPFRGSSNQRFIDVAASM 156 >C1SFI6.1 C1SFI6_9ACTN Ribonucleoside-triphosphate reductase class III activase subunit Length = 182 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 9/165 (5%) Query: 10 SINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMAANPLLDGLT 69 I G G+R LF+SGC H C GCF +TW F++GEPFT E R+II + +P +DGLT Sbjct: 10 DIANGTGVRTTLFVSGCTHHCKGCFQTQTWCFSFGEPFTDEIARQIIDSL-HDPWIDGLT 68 Query: 70 LAGGDPFFSAEEAA--GFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPEWN-----LLA 122 L GG+P + + A F++++R +P+ ++W+YTG YE+LT P SP LL+ Sbjct: 69 LLGGEPMEPSNQEALLPFVKQVRDAVPEKTIWMYTGDIYEDLT-DPASPRHTQYTDELLS 127 Query: 123 LCQVVIDGRFVEELKDTTLPYRGSSNQRIIDIQASLAGTEIVHWQ 167 L V++DG F++E KD TL +RGSSNQRIID+ A+ A ++V W Sbjct: 128 LINVLVDGPFMQERKDITLRFRGSSNQRIIDLAATRATGKVVLWH 172 >C3QX91.1 C3QX91_9BACE Anaerobic ribonucleoside-triphosphate reductase activating protein Length = 152 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 7/157 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN+ G YPE+I +GEG+R ++L+GC H CPGC NP++WN GE T E+ + II E+ Sbjct: 1 MNLLGTYPETIVDGEGIRYSIYLAGCSHHCPGCHNPESWNPRAGEELTEEKIQSIIREIK 60 Query: 61 ANPLLDGLTLAGGDPFFSAEEAAGFIQELRSVLPD--YSVWIYTGYTYEELTAAPGSPEW 118 ANPLLDG+T +GGDPFF EE F+ L+ V + +VW YTGY+YEE+ A P Sbjct: 61 ANPLLDGVTFSGGDPFFHPEE---FLLLLKRVKEETGMNVWCYTGYSYEEIKAQPRLSA- 116 Query: 119 NLLALCQVVIDGRFVEELKDTTLPYRGSSNQRIIDIQ 155 L V++DGRF + L L +RGSSNQRI+ ++ Sbjct: 117 -ALDYIDVLVDGRFEQALFSPYLEFRGSSNQRILKLK 152 >A7LUC7.1 A7LUC7_BACOV Putative uncharacterized protein Length = 152 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 7/157 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN+ G YPE+I +GEG+R ++L+GC H CPGC NP++WN GE T E+ + II E+ Sbjct: 1 MNLLGTYPETIVDGEGIRYSIYLAGCSHHCPGCHNPESWNPRAGEELTEEKIQSIIREIK 60 Query: 61 ANPLLDGLTLAGGDPFFSAEEAAGFIQELRSVLPD--YSVWIYTGYTYEELTAAPGSPEW 118 ANPLLDG+T +GGDPFF EE F+ L+ V + +VW YTGY+YEE+ A P Sbjct: 61 ANPLLDGVTFSGGDPFFHPEE---FLLLLKRVKEETGMNVWCYTGYSYEEIKAQPRLSA- 116 Query: 119 NLLALCQVVIDGRFVEELKDTTLPYRGSSNQRIIDIQ 155 L V++DGRF + L L +RGSSNQRI+ ++ Sbjct: 117 -ALDYIDVLVDGRFEQALFSPYLEFRGSSNQRILKLK 152 >A5ZLJ2.1 A5ZLJ2_9BACE Putative uncharacterized protein Length = 167 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 3/154 (1%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 + + G YPE+I +GEG+R ++L+GC H CPGC NP++WN N GE T E+ + II E+ Sbjct: 11 LRLLGTYPETIVDGEGIRYSIYLAGCSHHCPGCHNPESWNPNAGEELTEEKIQSIIREIK 70 Query: 61 ANPLLDGLTLAGGDPFFSAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPEWNL 120 ANPLLDG+T +GGDP F EE ++ ++ ++W YTGYTYEE+ P + Sbjct: 71 ANPLLDGVTFSGGDPLFYPEEFLALVKRVKEET-GMNIWCYTGYTYEEIREQPRLNA--V 127 Query: 121 LALCQVVIDGRFVEELKDTTLPYRGSSNQRIIDI 154 L V++DGRF ++L L +RGSSNQRI+ + Sbjct: 128 LPYINVLVDGRFEQDLFSPYLEFRGSSNQRILKL 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,159,275,748 Number of extensions: 47407824 Number of successful extensions: 104884 Number of sequences better than 1.0e-05: 752 Number of HSP's gapped: 103239 Number of HSP's successfully gapped: 752 Length of query: 171 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 45 Effective length of database: 1,873,648,313 Effective search space: 84314174085 Effective search space used: 84314174085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)