BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0013.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B8A0.1 Q2B8A0_9BACI UDP-N-acetylglucosamine 4,6-dehydratase 442 e-122 C3EP62.1 C3EP62_BACTK UDP-N-acetylglucosamine 4,6-dehydratase 432 e-119 C2WRD0.1 C2WRD0_BACCE UDP-N-acetylglucosamine 4,6-dehydratase 432 e-119 C2N4P3.1 C2N4P3_BACCE UDP-N-acetylglucosamine 4,6-dehydratase 431 e-119 B5UKH5.1 B5UKH5_BACCE FlmA 431 e-119 >Q2B8A0.1 Q2B8A0_9BACI UDP-N-acetylglucosamine 4,6-dehydratase Length = 329 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/329 (62%), Positives = 267/329 (81%), Gaps = 1/329 (0%) Query: 1 MFNNKRILVTGGTGSWGHELIRQLLPQNPKEIVIFSRSESAQVAMSREYEDS-RLSFIIG 59 MF +K ILVTGGTGSWG+EL+RQLL ++P+EI IFSR+ES Q M +E++++ RL FIIG Sbjct: 1 MFKDKTILVTGGTGSWGYELVRQLLEESPQEIRIFSRNESNQFTMKQEFDNNPRLHFIIG 60 Query: 60 DIRDKDALVAACRGIDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIACNVEKA 119 DI++KD L AC G+D+VFHLAALKHVPVCEDQP EALKTNV GTQNVI+AAI NVE Sbjct: 61 DIKEKDELTEACCGVDFVFHLAALKHVPVCEDQPLEALKTNVHGTQNVIDAAIHNNVESV 120 Query: 120 IYISTDKAANPSNFYGMTKAIGEKLFVYANLLGSNTRFVTVRGGNVLGTNGSVVHLFMKQ 179 IYISTDKA+NPSNFYG++KA+GE+L ++AN L +NT+FV +RGGNVLGTNGSV+H+F KQ Sbjct: 121 IYISTDKASNPSNFYGLSKAMGERLIIHANTLPTNTKFVCIRGGNVLGTNGSVIHVFKKQ 180 Query: 180 IKDKGQVRITDMKMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEA 239 I+ KG++ ITD++MTRFF TL DAI L+FKA++ S GGEIFVM MP C+I+DLA VL + Sbjct: 181 IRSKGKIGITDLEMTRFFLTLEDAIKLVFKATKESAGGEIFVMKMPACKILDLAYVLADE 240 Query: 240 SGRRDVSIIEAGIRPGEKIHEILMSDFESQTTVVYDEQYLVILPTLDMPELKARYSKYPH 299 +G++D+ I G RPGEKIHE+L+S++E+ TTV++DE+Y VILP + +P LK YS Sbjct: 241 AGKQDIEIEVLGTRPGEKIHELLLSEYEASTTVIFDEEYFVILPPIHIPGLKEAYSDCKP 300 Query: 300 VSFNSFSSENNLMDQREIKDILIRGGFLQ 328 +++S LM ++EIK+IL +GGF+Q Sbjct: 301 AELETYNSSKGLMGRKEIKEILKKGGFIQ 329 >C3EP62.1 C3EP62_BACTK UDP-N-acetylglucosamine 4,6-dehydratase Length = 328 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/326 (62%), Positives = 255/326 (78%), Gaps = 1/326 (0%) Query: 4 NKRILVTGGTGSWGHELIRQLLPQNPKEIVIFSRSESAQVAMSREY-EDSRLSFIIGDIR 62 NK IL+TGGTGSWGHELI+QLL ++PKEI IFSR+E+ Q M +++ D RL FIIGDIR Sbjct: 3 NKIILITGGTGSWGHELIKQLLEKSPKEIRIFSRNETVQFEMQQQFINDDRLKFIIGDIR 62 Query: 63 DKDALVAACRGIDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIACNVEKAIYI 122 DKD LV AC+G+ YVFHLAALKHVPVCE PYEA+KTN+ GTQNVIEA+I VEK IY+ Sbjct: 63 DKDQLVYACQGVHYVFHLAALKHVPVCEYYPYEAIKTNIHGTQNVIEASIQMQVEKVIYV 122 Query: 123 STDKAANPSNFYGMTKAIGEKLFVYANLLGSNTRFVTVRGGNVLGTNGSVVHLFMKQIKD 182 STDKAA+PSN YGMTKAIGEKL V+AN+ T+F+ VRGGNVLGT+GSVV LF +QIK Sbjct: 123 STDKAADPSNTYGMTKAIGEKLMVHANIQTKKTKFICVRGGNVLGTSGSVVPLFKQQIKK 182 Query: 183 KGQVRITDMKMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEASGR 242 QV ITD MTRFF T+ DA+ LLFKA GGEIFVM MP C+I DLAEVLIE SG+ Sbjct: 183 SSQVGITDANMTRFFLTVEDAVGLLFKAVSQGRGGEIFVMKMPACKITDLAEVLIEDSGK 242 Query: 243 RDVSIIEAGIRPGEKIHEILMSDFESQTTVVYDEQYLVILPTLDMPELKARYSKYPHVSF 302 +V + E GIRPGEK+ E+L+S+ ES+T++ +D+ Y V+LPT+ + L+ YS YP V Sbjct: 243 ENVKVKEVGIRPGEKLSEMLLSEVESKTSISFDQNYFVVLPTIPIQGLQQYYSSYPLVDV 302 Query: 303 NSFSSENNLMDQREIKDILIRGGFLQ 328 SFSS+ +L+ + E+K +L++GGFL+ Sbjct: 303 KSFSSQQDLLAKHEVKQMLLKGGFLR 328 >C2WRD0.1 C2WRD0_BACCE UDP-N-acetylglucosamine 4,6-dehydratase Length = 328 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/326 (62%), Positives = 255/326 (78%), Gaps = 1/326 (0%) Query: 4 NKRILVTGGTGSWGHELIRQLLPQNPKEIVIFSRSESAQVAMSREY-EDSRLSFIIGDIR 62 NK IL+TGGTGSWGHELI+QLL ++PKEI IFSR+E+ Q M +++ D RL FIIGDIR Sbjct: 3 NKIILITGGTGSWGHELIKQLLEKSPKEIRIFSRNETVQFEMQQQFINDDRLKFIIGDIR 62 Query: 63 DKDALVAACRGIDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIACNVEKAIYI 122 DKD LV AC+G+ YVFHLAALKHVPVCE PYEA+KTN+ GTQNVIEA+I VEK IY+ Sbjct: 63 DKDQLVYACQGVHYVFHLAALKHVPVCEYYPYEAIKTNIHGTQNVIEASIQMQVEKVIYV 122 Query: 123 STDKAANPSNFYGMTKAIGEKLFVYANLLGSNTRFVTVRGGNVLGTNGSVVHLFMKQIKD 182 STDKAA+PSN YGMTKAIGEKL V+AN+ T+F+ VRGGNVLGT+GSVV LF +QIK Sbjct: 123 STDKAADPSNTYGMTKAIGEKLMVHANIQTKKTKFICVRGGNVLGTSGSVVPLFKQQIKK 182 Query: 183 KGQVRITDMKMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEASGR 242 QV ITD MTRFF T+ DA+ LLFKA GGEIFVM MP C+I DLAEVLIE SG+ Sbjct: 183 SSQVGITDANMTRFFLTVEDAVGLLFKAVSQGRGGEIFVMKMPACKITDLAEVLIEDSGK 242 Query: 243 RDVSIIEAGIRPGEKIHEILMSDFESQTTVVYDEQYLVILPTLDMPELKARYSKYPHVSF 302 +V + E GIRPGEK+ E+L+S+ ES+T++ +D+ Y V+LPT+ + L+ YS YP V Sbjct: 243 ENVKVKEVGIRPGEKLSEMLLSEVESKTSISFDQNYFVVLPTIPIQGLQQYYSSYPLVDV 302 Query: 303 NSFSSENNLMDQREIKDILIRGGFLQ 328 SFSS+ +L+ + E+K +L++GGFL+ Sbjct: 303 KSFSSQQDLLAKHEVKQMLLKGGFLR 328 >C2N4P3.1 C2N4P3_BACCE UDP-N-acetylglucosamine 4,6-dehydratase Length = 328 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/326 (62%), Positives = 255/326 (78%), Gaps = 1/326 (0%) Query: 4 NKRILVTGGTGSWGHELIRQLLPQNPKEIVIFSRSESAQVAMSREY-EDSRLSFIIGDIR 62 NK IL+TGGTGSWGHELI+QLL ++PKEI IFSR+E+ Q M +++ D RL FIIGDIR Sbjct: 3 NKIILITGGTGSWGHELIKQLLEKSPKEIRIFSRNETVQFEMQQQFINDDRLKFIIGDIR 62 Query: 63 DKDALVAACRGIDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIACNVEKAIYI 122 DKD LV AC+G+ YVFHLAALKHVPVCE PYEA+KTN+ GTQNVIEA+I VEK IY+ Sbjct: 63 DKDQLVYACQGVHYVFHLAALKHVPVCEYYPYEAIKTNIHGTQNVIEASIQMQVEKVIYV 122 Query: 123 STDKAANPSNFYGMTKAIGEKLFVYANLLGSNTRFVTVRGGNVLGTNGSVVHLFMKQIKD 182 STDKAA+PSN YGMTKAIGEKL V+AN+ T+F+ VRGGNVLGT+GSVV LF +QIK Sbjct: 123 STDKAADPSNTYGMTKAIGEKLMVHANIQTKKTKFICVRGGNVLGTSGSVVPLFKQQIKK 182 Query: 183 KGQVRITDMKMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEASGR 242 +V ITD MTRFF T+ DA+ LLFKA GGEIFVM MP C+I DLAEVLIE SG+ Sbjct: 183 SSEVGITDANMTRFFLTVEDAVGLLFKAVSQGRGGEIFVMKMPACKITDLAEVLIEYSGK 242 Query: 243 RDVSIIEAGIRPGEKIHEILMSDFESQTTVVYDEQYLVILPTLDMPELKARYSKYPHVSF 302 V + E GIRPGEK+ E+L+S+ ES+T++ +D+ Y V+LPT+ + L+ YS YP V Sbjct: 243 EKVKVKEVGIRPGEKLSEMLLSEVESKTSISFDQNYFVVLPTIPIEGLQEYYSSYPLVDV 302 Query: 303 NSFSSENNLMDQREIKDILIRGGFLQ 328 SFSS+ +L+++ E+K +L++GGFL+ Sbjct: 303 KSFSSQQDLLEKHEVKQMLLKGGFLR 328 >B5UKH5.1 B5UKH5_BACCE FlmA Length = 328 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/326 (62%), Positives = 255/326 (78%), Gaps = 1/326 (0%) Query: 4 NKRILVTGGTGSWGHELIRQLLPQNPKEIVIFSRSESAQVAMSREY-EDSRLSFIIGDIR 62 NK IL+TGGTGSWGHELI+QLL ++PKEI IFSR+E+ Q M +++ D RL FIIGDIR Sbjct: 3 NKIILITGGTGSWGHELIKQLLEKSPKEIRIFSRNETVQFEMQQQFINDDRLKFIIGDIR 62 Query: 63 DKDALVAACRGIDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIACNVEKAIYI 122 DKD LV AC+G+ YVFHLAALKHVPVCE PYEA+KTN+ GTQNVIEA+I VEK IY+ Sbjct: 63 DKDQLVYACQGVHYVFHLAALKHVPVCEYYPYEAIKTNIHGTQNVIEASIQMQVEKVIYV 122 Query: 123 STDKAANPSNFYGMTKAIGEKLFVYANLLGSNTRFVTVRGGNVLGTNGSVVHLFMKQIKD 182 STDKAA+PSN YGMTKAIGEKL V+AN+ T+F+ VRGGNVLGT+GSVV LF +QIK Sbjct: 123 STDKAADPSNTYGMTKAIGEKLMVHANIQTKKTKFICVRGGNVLGTSGSVVPLFKQQIKK 182 Query: 183 KGQVRITDMKMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEASGR 242 +V ITD MTRFF T+ DA+ LLFKA GGEIFVM MP C+I DLAEVLIE SG+ Sbjct: 183 SSEVGITDANMTRFFLTVEDAVGLLFKAVSQGRGGEIFVMKMPACKITDLAEVLIEYSGK 242 Query: 243 RDVSIIEAGIRPGEKIHEILMSDFESQTTVVYDEQYLVILPTLDMPELKARYSKYPHVSF 302 V + E GIRPGEK+ E+L+S+ ES+T++ +D+ Y V+LPT+ + L+ YS YP V Sbjct: 243 EKVKVKEVGIRPGEKLSEMLLSEVESKTSISFDQNYFVVLPTIPIEGLQEYYSSYPLVDV 302 Query: 303 NSFSSENNLMDQREIKDILIRGGFLQ 328 SFSS+ +L+++ E+K +L++GGFL+ Sbjct: 303 KSFSSQQDLLEKHEVKQMLLKGGFLR 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,842,623,316 Number of extensions: 72065144 Number of successful extensions: 208469 Number of sequences better than 1.0e-05: 3034 Number of HSP's gapped: 207797 Number of HSP's successfully gapped: 3041 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)