BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0005.p
         (372 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D788.1 B1D788_9BACL Putative uncharacterized protein                 84   3e-14
Q5WJF5.1 Q5WJF5_BACSK Lipoprotein                                      81   1e-13
B4AFV9.1 B4AFV9_BACPU YhcN                                             80   2e-13
A8FBD3.1 A8FBD3_BACP2 Putative uncharacterized protein yhcN            80   5e-13
A7Z2T0.1 A7Z2T0_BACA2 YhcN                                             75   1e-11

>B1D788.1 B1D788_9BACL Putative uncharacterized protein
          Length = 285

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 304 VTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTMVQ 363
           +T  +K  IAAEVK+   ++ NVYVSA+PDFVDR N Y  + R GHP++GF  EF  MV+
Sbjct: 200 LTDKIKSDIAAEVKRLHPSVQNVYVSASPDFVDRMNSYMGDVRLGHPIQGFVSEFNAMVE 259

Query: 364 RIFP 367
           RIFP
Sbjct: 260 RIFP 263



 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 16/122 (13%)

Query: 79  RLGVNSVQGARTNTFDKMEMSQELADRIAAMPEVRSANVVVAGRSAYVAVVLDEASGGVH 138
           RL  N++ G+  N   KMEMS+E+A ++ AM  V++ANV++   +AYVAV  ++ + G+ 
Sbjct: 76  RLNSNNIVGSHKNY--KMEMSEEIAKKLVAMNTVKTANVMLTDNNAYVAVSFEDHTRGLS 133

Query: 139 AKSNGNTTRINRYNGTGGPSGIVAGDGRTLGRTATGITGRDGTRGSRNGVPGMTGVGGSM 198
           AKS         YN T   S I   +     R   G  G  G +   NG+ G  G+ G+M
Sbjct: 134 AKS---------YNRTNLSSPITDTN-----RHMNGTYGASGGKYGMNGMNGTYGMNGTM 179

Query: 199 TG 200
            G
Sbjct: 180 GG 181


>Q5WJF5.1 Q5WJF5_BACSK Lipoprotein
          Length = 167

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 302 DTVTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTM 361
           D VT ++K+KIA +V+K D+N++NVYVS+NPDFV+RA  Y      G P++GF  EF   
Sbjct: 99  DEVTEELKEKIAEQVRKTDENMNNVYVSSNPDFVERARDYTDRINNGEPVKGFVDEFNET 158

Query: 362 VQRIFP 367
           ++RIFP
Sbjct: 159 IRRIFP 164



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 11/105 (10%)

Query: 43  SAALLLGVVSITGCG--TNNTASDNKVQTQNVRGTHDGRLGVNSVQGARTNTFDKMEMSQ 100
           SA  L+G+V +TGCG   NN   D +V   + R T   + G +   G      D++E++ 
Sbjct: 8   SAICLIGLV-LTGCGMAQNNNDRDQQVDDNDNRETETRQQGYDDNAGP---VEDRLEVAD 63

Query: 101 ELADRIAAMPEVRSANVVVAGRSAYVAVVL-----DEASGGVHAK 140
           E A+R+A + EV  ANV++AG +AYVAV++     DE +  +  K
Sbjct: 64  ETAERVAELDEVERANVLIAGDNAYVAVMMTNRGEDEVTEELKEK 108


>B4AFV9.1 B4AFV9_BACPU YhcN
          Length = 169

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 304 VTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTMVQ 363
           VT D+K KI+ +VK  D+ IDNVYVSANPDFVDR   Y +  R+G P+ GF  EF   V+
Sbjct: 103 VTEDLKKKISDKVKSTDQQIDNVYVSANPDFVDRMEGYGKRIRSGEPISGFFDEFTETVR 162

Query: 364 RIFP 367
           R+FP
Sbjct: 163 RVFP 166


>A8FBD3.1 A8FBD3_BACP2 Putative uncharacterized protein yhcN
          Length = 169

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 304 VTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTMVQ 363
           VT D+K KI+ +VK  D+ IDNVYVSANPDFVDR   Y +  R+G P+ GF  EF   V+
Sbjct: 103 VTDDLKKKISDKVKSTDQQIDNVYVSANPDFVDRMEGYGKRIRSGEPISGFFDEFTETVR 162

Query: 364 RIFP 367
           R+FP
Sbjct: 163 RVFP 166


>A7Z2T0.1 A7Z2T0_BACA2 YhcN
          Length = 179

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%)

Query: 304 VTRDMKDKIAAEVKKYDKNIDNVYVSANPDFVDRANFYAQEFRAGHPLRGFAREFGTMVQ 363
           +   +K+KI  +VK  DK++  VYVSANPDFV+R   Y +  + GHP+ G   EFG MVQ
Sbjct: 112 IANHLKNKITDKVKSADKHVRTVYVSANPDFVERMQGYGKRIQNGHPVSGLFDEFGQMVQ 171

Query: 364 RIFP 367
           R+FP
Sbjct: 172 RVFP 175


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,111,307,087
Number of extensions: 93086679
Number of successful extensions: 489346
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 493912
Number of HSP's successfully gapped: 59
Length of query: 372
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 235
Effective length of database: 1,770,017,148
Effective search space: 415954029780
Effective search space used: 415954029780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)