BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0003.p (242 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA15.1 B3KA15_9BACI Glucosamine-6-phosphate isomerase 360 6e-98 Q8XHP8.1 NAGB_CLOPE Glucosamine-6-phosphate deaminase EC=3.5.99.6 278 2e-73 Q0TML8.1 NAGB_CLOP1 Glucosamine-6-phosphate deaminase EC=3.5.99.6 278 2e-73 B1DDV8.1 B1DDV8_9BACL Glucosamine-6-phosphate isomerase 278 2e-73 B1RA05.1 B1RA05_CLOPE Glucosamine-6-phosphate isomerase EC=3.5.99.6 276 8e-73 >B3KA15.1 B3KA15_9BACI Glucosamine-6-phosphate isomerase Length = 242 Score = 360 bits (924), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 167/241 (69%), Positives = 201/241 (83%) Query: 1 MNILKFTSDEDFAQTGANLIVSLLQSNPKAVLGLATGSSPVGVYAKLVEMHAKGIVSFAK 60 MNI F +E F QTGANLI SLL +NP+A LGLATGS+PVG+YAKL+EM+ +G+VSFA+ Sbjct: 1 MNIYTFRDEEQFVQTGANLISSLLHTNPRATLGLATGSTPVGLYAKLIEMNRQGLVSFAQ 60 Query: 61 ASSYNLDEYVGLPVDHPQSYRSFMNEHLFNHIDIDLAKTHVPNGNAADLEAECLAYDKLL 120 ++YNLDEYVGLP +HP+SYR+FMNE FNH+DI + +THVPNGNAAD EAECL YDK+L Sbjct: 61 TTTYNLDEYVGLPENHPESYRTFMNEKFFNHVDIQMDRTHVPNGNAADPEAECLNYDKML 120 Query: 121 EEGGPVDLQILGIGSNGHIGFNEPDASLTSGTHVVDLLPETLEANARFFDSREDVPRQAV 180 EE GPVDLQ+LG+G NGHIGFNEP SL+ GTHVV+L +T ANARFF + +DVP A+ Sbjct: 121 EEYGPVDLQLLGLGHNGHIGFNEPGESLSGGTHVVELQEKTRNANARFFPTLDDVPTHAI 180 Query: 181 TMGIGGILKARQIVLLVRGEEKAEAVKNALEGPITTQCPASLLQSHPNVVVLLDEGAAKW 240 TMG+ I+KARQI+LLVRGE+KAE V AL GPITT+CPASLLQ HPNVVVLLD+GA + Sbjct: 181 TMGVATIMKARQILLLVRGEDKAEIVHRALTGPITTECPASLLQCHPNVVVLLDQGAGRL 240 Query: 241 L 241 L Sbjct: 241 L 241 >Q8XHP8.1 NAGB_CLOPE Glucosamine-6-phosphate deaminase EC=3.5.99.6 Length = 242 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 182/242 (75%) Query: 1 MNILKFTSDEDFAQTGANLIVSLLQSNPKAVLGLATGSSPVGVYAKLVEMHAKGIVSFAK 60 M ++ + E+ ++ A + ++ NP+ VLGLATG +PVG+Y +L+ M+ +G + F+K Sbjct: 1 MRLIVTKNYEEMSKVAAKEMAEDIKRNPEIVLGLATGGTPVGMYKELIRMYNEGELDFSK 60 Query: 61 ASSYNLDEYVGLPVDHPQSYRSFMNEHLFNHIDIDLAKTHVPNGNAADLEAECLAYDKLL 120 +S NLDEYVGL DH QSYR FMN +LFNHI+ID T VPNG A ++E EC+AYD + Sbjct: 61 VTSINLDEYVGLSGDHDQSYRYFMNTNLFNHINIDKNNTFVPNGLAENVEEECMAYDSRI 120 Query: 121 EEGGPVDLQILGIGSNGHIGFNEPDASLTSGTHVVDLLPETLEANARFFDSREDVPRQAV 180 ++ G +DLQ+LG+G+NGHIGFNEP +L+ GTH+ DL T+EANARFFDS +DVPR+A+ Sbjct: 121 QDMGGIDLQLLGLGANGHIGFNEPGEALSVGTHLTDLKESTIEANARFFDSIDDVPRKAI 180 Query: 181 TMGIGGILKARQIVLLVRGEEKAEAVKNALEGPITTQCPASLLQSHPNVVVLLDEGAAKW 240 TMG+GGI+KA++I+++ GE KAE VK + G ITT+ PA++LQ H +V++++DE AAK Sbjct: 181 TMGLGGIMKAKKIMVIASGEGKAEVVKAMMSGKITTEIPATMLQMHRDVILIVDEDAAKL 240 Query: 241 LK 242 LK Sbjct: 241 LK 242 >Q0TML8.1 NAGB_CLOP1 Glucosamine-6-phosphate deaminase EC=3.5.99.6 Length = 242 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 182/242 (75%) Query: 1 MNILKFTSDEDFAQTGANLIVSLLQSNPKAVLGLATGSSPVGVYAKLVEMHAKGIVSFAK 60 M ++ + E+ ++ A + ++ NP+ VLGLATG +PVG+Y +L+ M+ +G + F+K Sbjct: 1 MRLIVTKNYEEMSKVAAKEMAEDIKRNPEIVLGLATGGTPVGMYKELIRMYNEGELDFSK 60 Query: 61 ASSYNLDEYVGLPVDHPQSYRSFMNEHLFNHIDIDLAKTHVPNGNAADLEAECLAYDKLL 120 +S NLDEYVGL DH QSYR FMN +LFNHI+ID T VPNG A ++E EC+AYD + Sbjct: 61 VTSINLDEYVGLSGDHDQSYRYFMNTNLFNHINIDKNNTFVPNGLAENVEEECMAYDARI 120 Query: 121 EEGGPVDLQILGIGSNGHIGFNEPDASLTSGTHVVDLLPETLEANARFFDSREDVPRQAV 180 ++ G +DLQ+LG+G+NGHIGFNEP +L+ GTH+ DL T+EANARFFDS +DVPR+A+ Sbjct: 121 QDMGGIDLQLLGLGANGHIGFNEPGEALSVGTHLTDLKESTIEANARFFDSIDDVPRKAI 180 Query: 181 TMGIGGILKARQIVLLVRGEEKAEAVKNALEGPITTQCPASLLQSHPNVVVLLDEGAAKW 240 TMG+GGI+KA++I+++ GE KAE VK + G ITT+ PA++LQ H +V++++DE AAK Sbjct: 181 TMGLGGIMKAKKIMVIASGEGKAEVVKAMMSGKITTEIPATMLQMHRDVILIVDEDAAKL 240 Query: 241 LK 242 LK Sbjct: 241 LK 242 >B1DDV8.1 B1DDV8_9BACL Glucosamine-6-phosphate isomerase Length = 241 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/241 (58%), Positives = 176/241 (73%), Gaps = 1/241 (0%) Query: 1 MNILKFTSDEDFAQTGANLIVSLLQSNPKAVLGLATGSSPVGVYAKLVEMHAKGIVSFAK 60 MN+ F + + A+L + +++S P AVLGLATGS+PVG+YAK+VE + KG VSFA Sbjct: 1 MNVRIFDTQLELDAFAADLFIDIVKSKPNAVLGLATGSTPVGIYAKMVEKYRKGDVSFAD 60 Query: 61 ASSYNLDEYVGLPVDHPQSYRSFMNEHLFNHIDIDLAKTHVPNGNAADLEAECLAYDKLL 120 +++NLDEYVGL + QSY +MN+HLF HIDI +T +PNG A DL+AEC YD +L Sbjct: 61 VTTFNLDEYVGLKPYNDQSYAYYMNKHLFAHIDIPDTQTFLPNGMAEDLDAECAQYDGML 120 Query: 121 EEGGPVDLQILGIGSNGHIGFNEPDASLTSGTHVVDLLPETLEANARFFDSREDVPRQAV 180 E VD+Q+LGIG NGHIGFNEPD +L+ THVV L ET EANARFF S ++VP A+ Sbjct: 121 LER-QVDVQLLGIGHNGHIGFNEPDHALSGETHVVKLKDETREANARFFASMDEVPEYAI 179 Query: 181 TMGIGGILKARQIVLLVRGEEKAEAVKNALEGPITTQCPASLLQSHPNVVVLLDEGAAKW 240 TMG+G ILKA IVL+VRG +KA+ VK AL GPITT+ PASLLQ+HP V VLLD A + Sbjct: 180 TMGVGSILKANSIVLVVRGADKADIVKQALTGPITTEVPASLLQTHPRVTVLLDREAGRM 239 Query: 241 L 241 L Sbjct: 240 L 240 >B1RA05.1 B1RA05_CLOPE Glucosamine-6-phosphate isomerase EC=3.5.99.6 Length = 242 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 127/242 (52%), Positives = 182/242 (75%) Query: 1 MNILKFTSDEDFAQTGANLIVSLLQSNPKAVLGLATGSSPVGVYAKLVEMHAKGIVSFAK 60 M ++ + E+ ++ A + ++ NP+ VLGLATG +PVG+Y +L+ M+ +G + F+K Sbjct: 1 MRLIVTKNYEEMSKVAAKEMAEDIKRNPEIVLGLATGGTPVGMYKELIRMYNEGELDFSK 60 Query: 61 ASSYNLDEYVGLPVDHPQSYRSFMNEHLFNHIDIDLAKTHVPNGNAADLEAECLAYDKLL 120 +S NLDEYVGL DH QSYR FMN +LF+HI+ID T VPNG A ++E EC+AYD + Sbjct: 61 VTSINLDEYVGLAGDHDQSYRYFMNTNLFDHINIDKNNTFVPNGLAENVEEECMAYDSRI 120 Query: 121 EEGGPVDLQILGIGSNGHIGFNEPDASLTSGTHVVDLLPETLEANARFFDSREDVPRQAV 180 ++ G +DLQ+LG+G+NGHIGFNEP +L+ GTH+ DL T+EANARFFDS +DVPR+A+ Sbjct: 121 QDMGGIDLQLLGLGANGHIGFNEPGEALSVGTHLTDLKESTIEANARFFDSIDDVPRKAI 180 Query: 181 TMGIGGILKARQIVLLVRGEEKAEAVKNALEGPITTQCPASLLQSHPNVVVLLDEGAAKW 240 TMG+GGI+KA++I+++ GE KAE VK + G ITT+ PA++LQ H +V++++DE AAK Sbjct: 181 TMGLGGIMKAKKIMVIASGEGKAEVVKAMMSGKITTEIPATMLQMHRDVILIVDEDAAKL 240 Query: 241 LK 242 LK Sbjct: 241 LK 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,454,195,806 Number of extensions: 61630568 Number of successful extensions: 150577 Number of sequences better than 1.0e-05: 1250 Number of HSP's gapped: 149067 Number of HSP's successfully gapped: 1252 Length of query: 242 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 110 Effective length of database: 1,817,122,223 Effective search space: 199883444530 Effective search space used: 199883444530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)