BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0002.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA16.1 B3KA16_9BACI Helix-turn-helix protein RpiR 399 e-109 C0Z7S3.1 C0Z7S3_BREBN Transcriptional regulator 206 2e-51 B0K1M8.1 B0K1M8_THEPX Transcriptional regulator, RpiR family 194 6e-48 B7R5Y7.1 B7R5Y7_9THEO Transcriptional regulator, RpiR family pro... 192 4e-47 Q8RD36.1 Y211_THETN Uncharacterized HTH-type transcriptional reg... 192 4e-47 >B3KA16.1 B3KA16_9BACI Helix-turn-helix protein RpiR Length = 291 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/291 (65%), Positives = 228/291 (78%) Query: 1 MSPILYALEHEKSKLSQMERKLAERILASPGEIVHMGITELAEQCGISPATITRFCKVLH 60 M+PIL+ + EK L + ER+LAE IL +P EIVHMGI +LA+QC +S AT+TRFCK Sbjct: 1 MTPILHIISVEKESLPRQERRLAEFILTAPSEIVHMGIKDLADQCEVSAATVTRFCKNFQ 60 Query: 61 FKGFPDFKVKLAAEIAHSDGSPEGSGSSYQDIVAGNPLSVIVEAMQANHLASIRDTTSLL 120 KG+PDFK+KLAAEIAH++ + + YQDIVAGNPL+ IVEA+++NHL SIRDTT LL Sbjct: 61 CKGYPDFKLKLAAEIAHAEMASRTGNTRYQDIVAGNPLAGIVEAIESNHLTSIRDTTELL 120 Query: 121 DLERLQSAIDVLCRARRVDMYGMATSSIVAQDFYQKLIRIGVNCTAFADSHMQITSASSL 180 DL +L+ A+D LCRA+R+D+YG+ATSSIVAQDFYQKLIRIG NCTAFADSHMQITSAS+L Sbjct: 121 DLGQLERAVDALCRAKRIDLYGVATSSIVAQDFYQKLIRIGKNCTAFADSHMQITSASTL 180 Query: 181 QEGDVAFAVSYSGETPETIDXXXXXXXXXXXXXXXXXYGSSSLATLADIPLFSSSLEQGM 240 DVA AVSYSGETPETID Y SS+++ LADI L+SSSLE+GM Sbjct: 181 TSSDVAVAVSYSGETPETIDALACAKDAGAFTISITSYRSSAISALADITLYSSSLEEGM 240 Query: 241 RRGDMASRIAQLHIIDILFTGMVSTRFGDFIPKLEQSYLNVQHYRHKRGGQ 291 RRGDMASRIAQLHIIDILF GM S F ++P+LEQSYLNVQ+YR RGGQ Sbjct: 241 RRGDMASRIAQLHIIDILFMGMASRDFSTYVPRLEQSYLNVQNYRKSRGGQ 291 >C0Z7S3.1 C0Z7S3_BREBN Transcriptional regulator Length = 288 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/284 (39%), Positives = 172/284 (60%), Gaps = 7/284 (2%) Query: 5 LYALEHEKSKLSQMERKLAERILASPGEIVHMGITELAEQCGISPATITRFCKVLHFKGF 64 L L+ +L ERK+A+ ILA P ++V + + +LAE G+S ATI R + L+ KG+ Sbjct: 9 LVGLQAILDQLKPSERKVADYILAHPEDVVKLSVQKLAEYSGVSEATIIRLARSLNMKGY 68 Query: 65 PDFKVKLAAEIAHSDGSPEGSGSSYQDIVAGNPLSVIVEAMQANHLASIRDTTSLLDLER 124 + K+++A D + + + SYQ+I+ + I++A+ N++ SI+DT S+L E Sbjct: 69 QELKLRVAG-----DLTKQTARGSYQEIMMEGSVESIMQAVSWNNIQSIQDTLSVLSNEE 123 Query: 125 LQSAIDVLCRARRVDMYGMATSSIVAQDFYQKLIRIGVNCTAFADSHMQITSASSLQEGD 184 ++ A+DVL AR++D+YG+ S+++A D QK RI + C A++D H Q+TSA +L E D Sbjct: 124 VKKAVDVLSVARKIDVYGVGASAVIADDIRQKFSRINLWCEAYSDFHAQLTSAVTLTEKD 183 Query: 185 VAFAVSYSGETPETIDXXXXXXXXXXXXXXXXXYGSSSLATLADIPLFSSSLEQGMRRGD 244 V +SYSG+T + I +G S +A LA+I LF+SS+E+ +R G Sbjct: 184 VVIGISYSGQTEDIIQSLTEAKQQGATIITLTKFGPSPVAELANIRLFTSSVEKSIRSGA 243 Query: 245 MASRIAQLHIIDILFTGMVSTRFGDFIPKLEQSYLNVQHYRHKR 288 MASRIAQL++IDILF M+S IP LE+S L V R KR Sbjct: 244 MASRIAQLNVIDILFITMISRMQERVIPLLEKSRLAVS--RTKR 285 >B0K1M8.1 B0K1M8_THEPX Transcriptional regulator, RpiR family Length = 280 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 158/265 (59%), Gaps = 6/265 (2%) Query: 13 SKLSQMERKLAERILASPGEIVHMGITELAEQCGISPATITRFCKVLHFKGFPDFKVKLA 72 + L ERK+AE I+ + +I + + ELA+ S A++ RFCK L +KG+ D K+K+A Sbjct: 13 NNLKPSERKIAEYIIENADKISDLSVAELAKNSNTSEASVVRFCKSLGYKGYQDLKIKIA 72 Query: 73 AEIAHSDGSPEGSGSSYQDIVAGNPLSVIVEAMQANHLASIRDTTSLLDLERLQSAIDVL 132 A+ + S +G + DI + I+ + N++ SI T +LD ++ A+ + Sbjct: 73 ADYTYKTKSIQGFVNIDDDI------NTIIVKISKNNMDSIEKTMDMLDRNEVERAVIAI 126 Query: 133 CRARRVDMYGMATSSIVAQDFYQKLIRIGVNCTAFADSHMQITSASSLQEGDVAFAVSYS 192 A ++D+YG+ S+IVAQD QK +RI +CTA++DSHMQ+ SA++L++GDVA +SYS Sbjct: 127 LNANKIDIYGVGASAIVAQDMLQKFMRINKSCTAYSDSHMQLASAANLRQGDVAIGISYS 186 Query: 193 GETPETIDXXXXXXXXXXXXXXXXXYGSSSLATLADIPLFSSSLEQGMRRGDMASRIAQL 252 G+T +T+D +G+S + ++DI LF S E R G MASR+AQL Sbjct: 187 GQTADTVDALRIAKNSGATTICITRFGNSPITEVSDIKLFVYSTEAIFRSGAMASRMAQL 246 Query: 253 HIIDILFTGMVSTRFGDFIPKLEQS 277 +++DILF+ + ++ + I LE + Sbjct: 247 NVVDILFSIIACRKYDEVIKYLENT 271 >B7R5Y7.1 B7R5Y7_9THEO Transcriptional regulator, RpiR family protein Length = 282 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 153/277 (55%), Gaps = 6/277 (2%) Query: 1 MSPILYALEHEKSKLSQMERKLAERILASPGEIVHMGITELAEQCGISPATITRFCKVLH 60 M+ +L + S + E K+A+ IL +P + + + ELA C S A+I RFC+ + Sbjct: 1 MTDVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIG 60 Query: 61 FKGFPDFKVKLAAEIAHSDGSPEGSGSSYQDIVAGNPLSVIVEAMQANHLASIRDTTSLL 120 KGF + K+K+A +A +G +S D++A +++ + + +I T ++L Sbjct: 61 LKGFQELKIKIAVSLAKQTRKLDGGITSEDDVMA------VIQKIANFNKQAIDSTIAVL 114 Query: 121 DLERLQSAIDVLCRARRVDMYGMATSSIVAQDFYQKLIRIGVNCTAFADSHMQITSASSL 180 + E L A + L A ++D YG+A S +VA D K RI + CTA+ D+H+Q+TSA +L Sbjct: 115 NAEELTKAAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNL 174 Query: 181 QEGDVAFAVSYSGETPETIDXXXXXXXXXXXXXXXXXYGSSSLATLADIPLFSSSLEQGM 240 ++GDVAF +SYSG T E ++ YG S LA ADI LF SS E Sbjct: 175 KKGDVAFGISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMF 234 Query: 241 RRGDMASRIAQLHIIDILFTGMVSTRFGDFIPKLEQS 277 R G MASRIAQL +IDILF + ++ D + LE + Sbjct: 235 RAGAMASRIAQLTVIDILFILVAQKKYNDVVRYLENT 271 >Q8RD36.1 Y211_THETN Uncharacterized HTH-type transcriptional regulator TTE0211 Length = 282 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 153/277 (55%), Gaps = 6/277 (2%) Query: 1 MSPILYALEHEKSKLSQMERKLAERILASPGEIVHMGITELAEQCGISPATITRFCKVLH 60 M+ +L + S + E K+A+ IL +P + + + ELA C S A+I RFC+ + Sbjct: 1 MTDVLAVIREMSSSFTPSEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIG 60 Query: 61 FKGFPDFKVKLAAEIAHSDGSPEGSGSSYQDIVAGNPLSVIVEAMQANHLASIRDTTSLL 120 KGF + K+K+A +A +G +S D++A +++ + + +I T ++L Sbjct: 61 LKGFQELKIKIAVSLAKQTRKLDGGITSEDDVMA------VIQKIANFNKQAIDSTIAVL 114 Query: 121 DLERLQSAIDVLCRARRVDMYGMATSSIVAQDFYQKLIRIGVNCTAFADSHMQITSASSL 180 + E L A + L A ++D YG+A S +VA D K RI + CTA+ D+H+Q+TSA +L Sbjct: 115 NAEELTKAAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNL 174 Query: 181 QEGDVAFAVSYSGETPETIDXXXXXXXXXXXXXXXXXYGSSSLATLADIPLFSSSLEQGM 240 ++GDVAF +SYSG T E ++ YG S LA ADI LF SS E Sbjct: 175 KKGDVAFGISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAKAADINLFVSSEEAMF 234 Query: 241 RRGDMASRIAQLHIIDILFTGMVSTRFGDFIPKLEQS 277 R G MASRIAQL +IDILF + ++ D + LE + Sbjct: 235 RAGAMASRIAQLTVIDILFILVAQKKYNDVVRYLENT 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,488,123,758 Number of extensions: 53528930 Number of successful extensions: 145437 Number of sequences better than 1.0e-05: 1958 Number of HSP's gapped: 143051 Number of HSP's successfully gapped: 1958 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)