BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0015.p (333 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAV9.1 B3KAV9_9BACI Nucleotide-binding protein containing TIR-... 365 4e-99 B9TGA1.1 B9TGA1_RICCO Putative uncharacterized protein 113 2e-23 A3INK0.1 A3INK0_9CHRO Putative uncharacterized protein 111 8e-23 A3IZP6.1 A3IZP6_9CHRO Putative uncharacterized protein 106 3e-21 A9A6G6.1 A9A6G6_METM6 Tetratricopeptide domain protein 104 1e-20 >B3KAV9.1 B3KAV9_9BACI Nucleotide-binding protein containing TIR-like domain-like protein Length = 342 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 181/341 (53%), Positives = 231/341 (67%), Gaps = 11/341 (3%) Query: 1 VTRPKLFIGSSRESIRYARAIHEQLKREAQVNPWYANAFRANEYTMEALERHLDESDFAV 60 + +P LFIGSSRE+I+YARAIHEQ+KR AQV PWY F AN YTMEALE+ L SDF V Sbjct: 3 IPKPNLFIGSSREAIKYARAIHEQIKRSAQVTPWYGGTFGANMYTMEALEKQLASSDFGV 62 Query: 61 FVFSPDDVARIRGKYYYVTRDNTQFEMGLFWARLRRSRVFCLLPDQVPVRKDLIPGENIE 120 FVFSPDDVA IRGK+ +VTRDNT FEMGL+W RL R RV+C++PDQV + ++ Sbjct: 63 FVFSPDDVALIRGKHVFVTRDNTLFEMGLYWGRLGRRRVYCIIPDQVEADSSSVQDVIVK 122 Query: 121 EYHLLSDLSGLTPLEYEWQHENPV-AAVDVSCGKIIDSIQALGSFRDPXXXXXXXXXXXX 179 +YHLLSDL G+T LEYE + ++ +AVDV+CG I+ +I+ G + +P Sbjct: 123 DYHLLSDLQGITLLEYELRSDDDYKSAVDVACGHILSAIETEGFYNNPSTLIEQKDAELR 182 Query: 180 XXXSILHFFWQYNSNVTSPEDRENYQALSEAVRNSFLPPK--HCRVIGAAMWQARGQEAL 237 S+LHFFW+YN NV ++ E Y ALSEAVRNS LPP RV GAA W R E + Sbjct: 183 RKQSVLHFFWEYNRNVHVSDEAEKYHALSEAVRNSLLPPAAGDFRVTGAAFW-GRRDEGI 241 Query: 238 VQVGGNVGRGHSYPFSPNEEKGSRPG-----VLEAFLTKEWTFFQRTEVAEVYILCYPLG 292 Q+GGNVG+G +PF + +K P V++ + + +W F+ EVA+VY+ CYPLG Sbjct: 242 AQIGGNVGKGRYFPF--DGKKDHSPSNQSIYVIDVYNSGKWAFYHEEEVAQVYVFCYPLG 299 Query: 293 ERHVLSVHFSGSDGLSAEDLTEVVAYNRDLFRTVNHLVGGD 333 HVLSVHF+G + L+ EDL EVV NR+L RT+ HLVGGD Sbjct: 300 VNHVLSVHFTGHEILTDEDLAEVVEQNRELLRTIRHLVGGD 340 >B9TGA1.1 B9TGA1_RICCO Putative uncharacterized protein Length = 249 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 14/166 (8%) Query: 3 RPKLFIGSSRESIRYARAIHEQLKREAQVNPWYANAFRANEYTMEALERHLDESDFAVFV 62 +PK+FIGSSRE + A AIH L R+A+ W F+ + T+ +L L SDF VFV Sbjct: 2 KPKIFIGSSREGLDIANAIHANLTRDAECTVWSNGVFQISGTTIYSLINALRNSDFGVFV 61 Query: 63 FSPDDVARIRGKYYYVTRDNTQFEMGLFWARLRRSRVFCLLPDQVPVRKDLIPGENIEEY 122 FSPDD+ +RG+ V RDN FE+GLF RL R F + PD V + Sbjct: 62 FSPDDLTIMRGQQNPVVRDNVIFELGLFIGRLGVERCFFITPDHVA------------DL 109 Query: 123 HLLSDLSGLTPLEYEWQH--ENPVAAVDVSCGKIIDSIQALGSFRD 166 L +DL G+ P +YE +N +AA + C +I + L SF+D Sbjct: 110 RLPTDLMGIMPGQYEANRHDKNWLAATNPICMQIRAKLIELKSFQD 155 >A3INK0.1 A3INK0_9CHRO Putative uncharacterized protein Length = 264 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 14/165 (8%) Query: 3 RPKLFIGSSRESIRYARAIHEQLKREAQVNPWYANAFRANEYTMEALERHLDESDFAVFV 62 + K+FIGSS E + A A + L +V W F + T++ L LD+ DFA+FV Sbjct: 2 KLKVFIGSSFEGLDVAYAAQKNLDHTGEVTVWNQGIFELSSNTLDDLVNSLDKFDFAIFV 61 Query: 63 FSPDDVARIRGKYYYVTRDNTQFEMGLFWARLRRSRVFCLLPDQVPVRKDLIPGENIEEY 122 FSPDD++ IR + Y RDN FE+GLF A+L + R F L+P I+++ Sbjct: 62 FSPDDISHIREQKYQAVRDNVIFELGLFIAKLGKRRCFILMP------------RGIKDF 109 Query: 123 HLLSDLSGLTPLEYE--WQHENPVAAVDVSCGKIIDSIQALGSFR 165 L SDL G+TP Y+ Q N +AA+ +C I +I LGS + Sbjct: 110 RLPSDLLGVTPATYDNSRQDNNLLAALGPACFDISKAINKLGSLQ 154 >A3IZP6.1 A3IZP6_9CHRO Putative uncharacterized protein Length = 320 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 15/163 (9%) Query: 3 RPKLFIGSSRESIRYARAIHEQLKREAQVNPWYANAFRANEYTMEALERHLDESDFAVFV 62 RP +FIGSS E++ YA AI L+R+A+ W + F+ ++ T+E L R ++ DF++FV Sbjct: 9 RPAVFIGSSAENLDYAYAIQANLERDAEPTVWNQDLFKLSQSTLEDLCRQVENFDFSIFV 68 Query: 63 FSPDDVARIRGKYYYVTRDNTQFEMGLFWARLRRSRVFCLLPDQVPVRKDLIPGENIEEY 122 F+P+D IR + RDN FE+GLF L R+R F ++P EE+ Sbjct: 69 FTPNDTVIIRKEENRSVRDNVVFELGLFIGNLGRNRCFFIIPRG-------------EEF 115 Query: 123 HLLSDLSGLTPLEYE--WQHENPVAAVDVSCGKIIDSIQALGS 163 HL +DL G+ Y+ Q +N AA+ +C ++I+SI+ LG Sbjct: 116 HLPTDLLGIKAGTYDSSRQDKNWKAALGPACREVINSIRELGK 158 >A9A6G6.1 A9A6G6_METM6 Tetratricopeptide domain protein Length = 481 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 15/166 (9%) Query: 3 RPKLFIGSSRESIRYARAIHEQLKREAQVNPWYANAFRANEYTMEALERHLDESDFAVFV 62 +P++FIGSS E + A AI LK +A+V W+ F ++ ++E+LE LD DF +FV Sbjct: 2 KPRVFIGSSVEGVNVAEAIQRHLKDDAEVKIWHQGVFELSKTSIESLENALDSFDFGIFV 61 Query: 63 FSPDDVARIRGKYYYVTRDNTQFEMGLFWARLRRSRVFCLLPDQVPVRKDLIPGENIEEY 122 F+ +D+ +IRG+ RDN FE GLF +L R RVF ++P G ++ Sbjct: 62 FNNEDILKIRGEEKSAVRDNLIFEFGLFIGKLTRERVFFVIP----------SGSDL--- 108 Query: 123 HLLSDLSGLTPLEYEWQH--ENPVAAVDVSCGKIIDSIQALGSFRD 166 HL +DL G+T +Y+ +N A + ++ I+ALG F++ Sbjct: 109 HLPTDLLGITYGQYDANQSDDNIDTATKIFSNQVRIPIKALGRFKN 154 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,946,040,291 Number of extensions: 77531846 Number of successful extensions: 151559 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 151528 Number of HSP's successfully gapped: 32 Length of query: 333 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 197 Effective length of database: 1,779,438,163 Effective search space: 350549318111 Effective search space used: 350549318111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)