BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0011.p (605 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7N6.1 B1D7N6_9BACL Integral membrane sensor signal transducti... 358 9e-97 B3K4S2.1 B3K4S2_9BACI Histidine kinase internal region 315 1e-83 A6CLU9.1 A6CLU9_9BACI Putative uncharacterized protein 302 8e-80 B3KDQ0.1 B3KDQ0_9BACI Histidine kinase internal region 286 4e-75 Q2BAB1.1 Q2BAB1_9BACI Putative uncharacterized protein 279 5e-73 >B1D7N6.1 B1D7N6_9BACL Integral membrane sensor signal transduction histidine kinase Length = 610 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 215/619 (34%), Positives = 328/619 (52%), Gaps = 31/619 (5%) Query: 2 FKNSIRTRLMALVLLASVIPSAISVTFSYLYTKESVTEQSVKQNTKLLTLGEANLSSYFS 61 F SI +LMAL+L ++IP +S+ S Y K+ VT+QS+ +N LL LG+ N+ Y Sbjct: 4 FATSINRKLMALLLAVTIIPITVSMIISNYYIKDKVTQQSIHENQNLLALGKNNILGYMD 63 Query: 62 GMNQRAMSLYSGINVPSSFYTVLLTSKSKQDATPGSAVP----DNRAVISTQLSNLFLSD 117 +N+ ++ +Y IN +S Y ++ ++ +P VP N I + N++ S Sbjct: 64 KINENSLDVYLNINKSNSLYALI-----ERGQSPNVNVPMFDEKNNLQIYAHMLNIYQST 118 Query: 118 RNTFQIHLYVRAAQQSNLLRGGYFRQEANSRYALGEHLDGTYRPYIEVTHIEHQYGIRSG 177 QI L + + + L+ G+FR+ N + +P++E TH Y + Sbjct: 119 NGIHQIQLQIGDGKLTYLMARGFFRRGINQPLEWPTEHGSSPKPFVEATHTSAHYNLDWS 178 Query: 178 FPNLKPGIEPVFTAHFPIYKTPSSDVLADLSIDYRLAELEGIVKSMYNSDTERLYVLNDQ 237 + E VFT PI +TPS +V+ LS+D + EL I + + S E+LY++ D+ Sbjct: 179 HAVKE---ESVFTLRRPIIRTPSDEVIGYLSMDVKSDELNQICRQLTMSSEEQLYII-DR 234 Query: 238 GQALFAS-----DPDWIGKPVKAGWSQ--LPGNSSSGHFTWKRDGFKGIVMYRHIEDPLF 290 + S D D + W+ L +G W+ F GIV+Y + Sbjct: 235 SRNFVCSVNGQEDQD------RLKWTDQVLASKQENGVIKWQDQSFSGIVIYDTLSTNYM 288 Query: 291 KGSIIKLVPYEDLYEDARVITRFNTXXXXXXXXXXXXSAVLISIGFTRPIKKLISFTQKV 350 ++K +PY LYE A I NT ++ L+S FT+PIK+LI +V Sbjct: 289 DWVVVKQLPYSYLYESATAIRTINTSVIAIFMVLAVIASFLVSYQFTKPIKRLIGHINQV 348 Query: 351 QIGQLDARMDVEREDEFGLLTRKITGMTRTINDLILNEYKLELANKTNQLKALQAQVNPH 410 Q G + + V+R+DE G+L R+ M +TI DLI +EY+LE+ANKTNQL+A+QAQ+NPH Sbjct: 349 QSGNFNVVVPVDRKDEIGILARRFNTMIQTIRDLINSEYRLEIANKTNQLRAMQAQINPH 408 Query: 411 FLYNALQSIASLSLRYNAPKVYDLIYSLGSMMRYSMNTERTQVPLRDEIEHVQNYVILQT 470 FLYNALQSI +L+L APKVY LI S+ MMRY+MNT + VP E+ H + Y+ LQ Sbjct: 409 FLYNALQSIGTLALHAGAPKVYTLITSIAKMMRYNMNTSESIVPFSMELNHAKAYLELQQ 468 Query: 471 ERFGEENLRXXXXXXXXXXXXXXPKMILQPIVENIFKHGFADGIQGGVISIRCALDGQGR 530 +RF E+ L PKM+LQP+VEN FKHG+ + GV+ + + G Sbjct: 469 QRFNEQ-LTVHYDIDPASLSVQVPKMLLQPLVENYFKHGYETSGRSGVLRLFSEVTDDGS 527 Query: 531 -LMLAVKDNGKGIAPERLEAILAGLAESGRT---EREEIGLYNVLARLRLQMSSGAQLLL 586 L + ++DNG G+ P++L + L S E++ IG+ NV RL+L + A++ + Sbjct: 528 WLTIRIEDNGSGMDPDKLRELRQLLFRSTGALLEEQKSIGISNVWMRLKLYYNEEAEMSI 587 Query: 587 SGNEDSGVTVTLLIPLDSI 605 + G TVTL IP+ + Sbjct: 588 DSSPSGGFTVTLRIPVQEL 606 >B3K4S2.1 B3K4S2_9BACI Histidine kinase internal region Length = 594 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 206/613 (33%), Positives = 317/613 (51%), Gaps = 39/613 (6%) Query: 1 MFKNSIRTRLMALVLLASVIPSAISVTFSYLYTKESVTEQSVKQNTKLLTLGEANLSSYF 60 M SI+TRL+ +L + IP +S+ ++ +T+ESV EQ+V +N +L+ G NL +Y Sbjct: 1 MKYRSIQTRLITFMLAVTTIPLLLSLIITFTHTRESVKEQTVNENVRLIYQGATNLMNYL 60 Query: 61 SGMNQRAMSLYSGINVPSSFYTVLLTSKSKQDATPGSAVPDNRAVIS---TQLSNLFLSD 117 G+++ ++S+YS P + L PDN V++ L + Sbjct: 61 RGIDRASLSVYSD---PHFLRNLALD-------------PDNHRVVAELYATLQAIQTGT 104 Query: 118 RNTFQIHLYVRAAQQSNLLRGGYFRQE-ANSRYALGEHLDGTYRPYIEVTHIEHQYGIRS 176 ++ QI+L+ + QS + R+E + Y E G IE H H YG Sbjct: 105 QDVHQIYLHNQLTGQSTQISSNLPRREFRQAPYRKIEEF-GEGNTAIEPVHQVHSYG--- 160 Query: 177 GFPNLKPGIE--PVFTAHFPIYKTPSSDVLADLSIDYRLAELEGIVKSMYNSDTERLYVL 234 FP I V T + I P+ D A ++ID +L + I +Y E LY++ Sbjct: 161 -FPPRPADILDFEVITFYRSITNVPAPDQYALMAIDVKLDSILAICDQLYAKGEEALYLI 219 Query: 235 NDQGQALFASDPDWIGKPVK-AGWSQLPGNSSSGHFTWKRDGFKGIVMYRHIEDPLFKGS 293 + G ++ DP G+ + + + G++ DG +++Y ++ P + Sbjct: 220 DSSGSIIYGPDPQQRGQALDDPELMDVIAQAERGYY----DGEDAMIVYEKLDLPYAPWT 275 Query: 294 IIKLVPYEDLYEDARVITRFNTXXXXXXXXXXXXSAVLISIGFTRPIKKLISFTQKVQIG 353 ++K +P++ LY+ + +T N + ISI T+PIK+L ++ +V+ G Sbjct: 276 LVKQIPHQTLYKHSTELTSINAIIAILALFIVIFGTLWISIRITKPIKQLTTYMNQVKTG 335 Query: 354 QLDARMDVEREDEFGLLTRKITGMTRTINDLILNEYKLELANKTNQLKALQAQVNPHFLY 413 +LD +DV DE G+L+R+ M TIN+LIL EY+LE+ANKTNQLKALQAQ++PHFLY Sbjct: 336 RLDVNIDVTSPDEIGILSRRFRTMMDTINNLILREYRLEIANKTNQLKALQAQIDPHFLY 395 Query: 414 NALQSIASLSLRYNAPKVYDLIYSLGSMMRYSMNTERTQVPLRDEIEHVQNYVILQTERF 473 N LQSI +L+L++N P++Y L+ SL +MMRY+M +V L+DEI HV+ Y+ LQ +RF Sbjct: 396 NTLQSIGTLALQHNVPRIYSLLSSLANMMRYNMRNSEGKVTLQDEINHVRLYLELQKQRF 455 Query: 474 GEENLRXXXXXXXXXXXXXXPKMILQPIVENIFKHGFADGIQGGVISIRCALDGQGRLML 533 ++ L PKMILQPIVEN FKHG G ISI + GRL++ Sbjct: 456 RDQ-LEIIWDVDPESLTTPVPKMILQPIVENYFKHGMNTHAGVGRISISTRIAEDGRLIV 514 Query: 534 AVKDNGKGIAPERLEAILAGL------AESGRTEREEIGLYNVLARLRLQMSSGAQLLLS 587 +++NG I L +I L + + IGL NV RL L ++ A+L + Sbjct: 515 VIENNGASIEEAELASIRGKLETAFHHPDRNDAGEDSIGLLNVYMRLNLYSNNHAELTIE 574 Query: 588 GNEDSGVTVTLLI 600 E GV VTL I Sbjct: 575 NAEPHGVKVTLDI 587 >A6CLU9.1 A6CLU9_9BACI Putative uncharacterized protein Length = 603 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 205/631 (32%), Positives = 316/631 (50%), Gaps = 70/631 (11%) Query: 1 MFKNSIRTRLMALVLLASVIPSAISVTFSYLYTKESVTEQSVKQNTKLLTLGEANLSSYF 60 M KNSIR +L+ L+++ ++IP S+ +YLYTK S+ E+ V++++ LL G+ NL +Y Sbjct: 1 MIKNSIRNKLIVLLMITTIIPFGSSIIITYLYTKNSIEEEVVQESSNLLYQGKINLENYI 60 Query: 61 SGMNQRAMSLYSG---IN----------------VPSSFYTVLLTSKSKQDATPGSAVPD 101 + ++ +SLY+ IN V + T L T K+ ++ T A D Sbjct: 61 NELSGLTLSLYNNPDFINYMRSPQSESDYLTIGLVKNVVQTFLYTEKTIKEVTITFA-DD 119 Query: 102 NRAVISTQLSNLFLSDRNTFQIHLYVRAAQQSNLLRGGYFRQEANSRYALGEHLDGTYRP 161 +R + +T+ S + S R A++Q L++ A S Y L Sbjct: 120 DRVISATKHSTVVFSMREG--------ASEQEALMKA------ARSPYNLN--------- 156 Query: 162 YIEVTHIEHQYGIRSGFP---NLKPGIEPVFTAHFPIYKTPSSDVLADLSIDYRLAELEG 218 I +P N + + + T H + P+ +VL +S++ ++ Sbjct: 157 ------------IAPAYPQQENERKRSKSIATIHRALINIPADEVLGYISLEILPDKILD 204 Query: 219 IVKSMYNSDTERLYVLNDQGQALFASDPDWIGKPVKAGWSQ--LPGNSSSGHFTWKRDGF 276 + K++YN+DTE Y+L +G+ +++SD D W Q GN +SG W++D F Sbjct: 205 LSKNLYNTDTEEFYLLTPEGEVIYSSDGDTSLNKRSQEWIQEITDGNETSGTLEWQKDSF 264 Query: 277 KGIVMYRHIEDPLFKGSIIKLVPYEDLYEDARVITRFNTXXXXXXXXXXXXSAVLISIGF 336 G++MY + ++K V Y +LYE A + + N S + +S Sbjct: 265 NGVMMYDRLSPSAGGWILVKRVSYANLYESAFSVAKINILFGFVGLSLVILSILFVSFKI 324 Query: 337 TRPIKKLISFTQKVQIGQLDARMDVEREDEFGLLTRKITGMTRTINDLILNEYKLELANK 396 T PI+ L+ Q+V+ G++ DE GLL + M IN LI EYKLEL NK Sbjct: 325 TSPIRVLLHNIQQVEKGEMKIESQSFGTDEIGLLGSRFQQMIGRINHLINREYKLELENK 384 Query: 397 TNQLKALQAQVNPHFLYNALQSIASLSLRYNAPKVYDLIYSLGSMMRYSMNTERTQVPLR 456 TNQLK LQ+Q+NPHFLYNALQSI +++L+ P++Y LI L +MRY M+ E V L Sbjct: 385 TNQLKVLQSQINPHFLYNALQSIGTIALKNKVPQIYTLITHLSKIMRYGMDMEEDIVSLN 444 Query: 457 DEIEHVQNYVILQTERFGEENLRXXXXXXXXXXXXXXPKMILQPIVENIFKHGF--ADGI 514 EI + + Y++LQ ERFG ++L PKM+LQPI+EN FKHGF +GI Sbjct: 445 KEINYTRAYLLLQKERFG-DHLDYSIEVEEGLKEVKVPKMLLQPIIENYFKHGFDIREGI 503 Query: 515 QGGVISIRCALDGQGRLMLAVKDNGKGIAPERLEAILAGLAESGRT---EREEIGLYNVL 571 G I + C L++ V+DNG G+ ++L+ I + E IGL NV Sbjct: 504 --GRIRLNC-FSEHDELVITVEDNGAGVTAQKLQEIYEHFQTDIKNTTGENTSIGLKNVF 560 Query: 572 ARLRLQMSSGAQLLLSGNEDSGVTVTLLIPL 602 RL+L + A L L N + G VT+ +P+ Sbjct: 561 VRLKLYYNQQASLELQ-NLEGGFRVTMRLPV 590 >B3KDQ0.1 B3KDQ0_9BACI Histidine kinase internal region Length = 611 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 194/620 (31%), Positives = 313/620 (50%), Gaps = 44/620 (7%) Query: 4 NSIRTRLMALVLLASVIPSAISVTFSYLYTKESVTEQSVKQNTKLLTLGEANLSSYFSGM 63 NSIRT+L+ +++A++IP+ IS+ SY+ T S+ E++V +N LL G NL SY M Sbjct: 6 NSIRTKLITFMIMATIIPTTISMIISYVMTTNSLKERAVVENMNLLYQGRLNLESYLEEM 65 Query: 64 NQRAMSLYSGINVPSSFYTVL--LTSKSKQDATPGSAVPDNRAVISTQLSNLFLSDRNTF 121 N+ ++++YS + S Y + + +Q AT S +A+ ++ Sbjct: 66 NRSSLTVYSDPDFFRSLYYSHENINASGRQSATLQSI---QKAISGSR------------ 110 Query: 122 QIHLYVRAAQQSNLLRGGYFRQ--EANSRYALGEHLDGTYRPYIEVTHIEHQYGIRSGFP 179 Q++LYV +++ L R+ E N + + + T ++ H H YG + +P Sbjct: 111 QVYLYVDGKREATLFAQDIARKTSEVNLYPEIPDLRNDTV--VLQPPHPLHTYGFQLAYP 168 Query: 180 NLKPGIEPVFTAHFPIYKTPSSDVLADLSIDYRLAELEGIVKSMYNSDTERLYVLNDQGQ 239 + VFT + I + PS++ L L+ID + L I ++ D E+LY+ N+ G Sbjct: 169 --YEADQQVFTMYRVIERVPSTERLGILAIDLDMDFLSRISGQLFQPDHEQLYIANEDGY 226 Query: 240 ALFASDPDWIGKPVKAGW--SQLPGNSSSGHFTWKRDGFKGIVMYRHIEDPLFKGSIIKL 297 +++ D + +G+ V+A W S GHF + I +Y +I+ + ++IK Sbjct: 227 IMYSGDDEMLGQQVQADWYASIKQSGKKEGHFEYN----NKIYLYNNIKTSVSDWTMIKE 282 Query: 298 VPYEDLYEDARVITRFNTXXXXXXXXXXXXSAVLISIGFTRPIKKLISFTQKVQIGQLDA 357 +P + A N + + IS+ T PI++L+ +V+ G++ Sbjct: 283 IPSSYILSSADKAAFVNILLIGVSLILIIAATIWISVYITAPIRELVGLMSQVKSGRMTV 342 Query: 358 RMDVEREDEFGLLTRKITGMTRTINDLILNEYKLELANKTNQLKALQAQVNPHFLYNALQ 417 + R+DE G L R+ M TIN+LIL EYKL+LAN+TNQL+ALQAQVNPHF+ NALQ Sbjct: 343 DISSNRKDEIGALHRRFGSMMDTINNLILQEYKLKLANRTNQLRALQAQVNPHFMNNALQ 402 Query: 418 SIASLSLRYNAPKVYDLIYSLGSMMRYSMNTERTQVPLRDEIEHVQNYVILQTERFGEEN 477 +I +L+L + ++Y LI +L MMRYSM V L E++H+++YV LQ ERF E Sbjct: 403 TIGTLALEHGMKRIYSLISALARMMRYSMYNTDKPVTLATELDHIKDYVELQKERF-ENQ 461 Query: 478 LRXXXXXXXXXXXXXXPKMILQPIVENIFKHGFADGIQGGVISIRCALDGQGRLMLAVKD 537 PKM++QP++EN FKHG Q I++ + + V+D Sbjct: 462 FDFRYDVDESTLQVLIPKMLVQPLIENFFKHGMNPLEQDNFIALTSRRLSASIVQITVED 521 Query: 538 NGKGIAPE----------RLEAI-LAGLAESGRTEREE---IGLYNVLARLRLQMSSGAQ 583 NG G+ E R+E + L L E E+ IGL N++ RLRL ++ Sbjct: 522 NGNGMQEEPFQTLQEHLLRMEELDLEQLQVVSELETEDSSGIGLINIMTRLRLYYRGKSK 581 Query: 584 LLLSGNEDSGVTVTLLIPLD 603 + N+ G V L I ++ Sbjct: 582 FNIENNQPHGFRVVLTINVE 601 >Q2BAB1.1 Q2BAB1_9BACI Putative uncharacterized protein Length = 599 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 198/615 (32%), Positives = 310/615 (50%), Gaps = 42/615 (6%) Query: 1 MFKNSIRTRLMALVLLASVIPSAISVTFSYLYTKESVTEQSVKQNTKLLTLGEANLSSYF 60 M KNSIR +L+ L+LL ++IP S+ +Y +TKE + Q+V++N+KLL G+ NL SY Sbjct: 1 MIKNSIRNKLIVLLLLITIIPFGTSIIITYFHTKEFLKNQAVEENSKLLYQGKINLESYM 60 Query: 61 SGMNQRAMSLYSGINVPSSFYTVLLTSKSKQDATPGSAVPDNRAVISTQLSNLFLSDR-N 119 + +N +SLY N P F L +SK + + + + V+ T L+ D N Sbjct: 61 NELNGLTLSLY---NNP-GFLNFLRSSKDEDNYL---TIGIMKNVVQTI---LYAGDTIN 110 Query: 120 TFQIHL-----YVRAAQQSNL--LRGGYFRQEANSRYALGEHLDGTYRPYIEVTHIEHQY 172 QI + A+++S + ++G + A S A D + YIE + Q Sbjct: 111 RVQIAFADEDRVISASRRSTVVFMKG----RSAKSAEAFNRARDSSSHMYIE--PLMEQT 164 Query: 173 GIRSGFPNLKPGIEPVFTAHFPIYKTPSSDVLADLSIDYRLAELEGIVKSMYNSDTERLY 232 R+ + H PS +VLA ++++ ++ + +++Y +E Y Sbjct: 165 NSRN-----------IMAVHRAFTNIPSDNVLAYITLEIAPDDIVNLSRNLYTPGSEEFY 213 Query: 233 VLNDQGQALFASDPDWIGKPVKAGW--SQLPGNSSSGHFTWKRDGFKGIVMYRHIEDPLF 290 +++ G +++SD D V W + + + +G WK+D F G+++Y +E+ Sbjct: 214 IVSQDGLLIYSSDKDAASGQVPEKWVDAIVSSGNKAGTLEWKKDDFSGMMIYEQMEESAG 273 Query: 291 KGSIIKLVPYEDLYEDARVITRFNTXXXXXXXXXXXXSAVLISIGFTRPIKKLISFTQKV 350 ++K VP LYE A + + N + + +S T PI+ L+ +V Sbjct: 274 GWFLVKRVPDTTLYESAFSVAKINILFGIIGLTLVILATLFVSFRITSPIRVLLRSISQV 333 Query: 351 QIGQLDARMDVEREDEFGLLTRKITGMTRTINDLILNEYKLELANKTNQLKALQAQVNPH 410 + G ++ D +DE G+L + M IN LI EYKLE+ NKTNQLK LQ+Q+NPH Sbjct: 334 ERGDMNVEYDSFGKDEIGILGMRFNEMIEKINHLINREYKLEIENKTNQLKVLQSQINPH 393 Query: 411 FLYNALQSIASLSLRYNAPKVYDLIYSLGSMMRYSMNTERTQVPLRDEIEHVQNYVILQT 470 FLYNALQSI +++L+ P++Y LI L +MRY M+ E +VPL EI + + +++LQ Sbjct: 394 FLYNALQSIGTVALKNKVPQIYTLITHLSKIMRYGMDMEEDRVPLIKEINYTKAFLLLQK 453 Query: 471 ERFGEENLRXXXXXXXXXXXXXXPKMILQPIVENIFKHGFADGIQGGVISIRCALDGQGR 530 ERFGE+ + PKM+LQP++EN FKHGF G G ++I C D G Sbjct: 454 ERFGEKFI-YRIDAGEEVSSVKVPKMLLQPVIENYFKHGFTPGEGTGELNIECNKD-SGF 511 Query: 531 LMLAVKDNGKGIAPERLEAI---LAGLAESGRTEREEIGLYNVLARLRLQMSSGAQLLLS 587 L + + DNG G RL I + G + + IGL NV RL L A L L Sbjct: 512 LCIDISDNGGGADDGRLGDIWRCIKGGPLEAKGDSTSIGLRNVYGRLMLYYGEEAILQLG 571 Query: 588 GNEDSGVTVTLLIPL 602 G V++ +PL Sbjct: 572 NRGGKGFIVSMKLPL 586 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,255,318,591 Number of extensions: 132271058 Number of successful extensions: 331441 Number of sequences better than 1.0e-05: 1952 Number of HSP's gapped: 327700 Number of HSP's successfully gapped: 1952 Length of query: 605 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 463 Effective length of database: 1,722,912,073 Effective search space: 797708289799 Effective search space used: 797708289799 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)