BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0010.p (321 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7N7.1 B1D7N7_9BACL Binding-protein-dependent transport system... 401 e-110 B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport system... 340 8e-92 B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport system... 339 2e-91 A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system pe... 318 4e-85 Q2BAB4.1 Q2BAB4_9BACI Multiple sugar-binding transport system pe... 315 5e-84 >B1D7N7.1 B1D7N7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/298 (68%), Positives = 235/298 (78%), Gaps = 3/298 (1%) Query: 24 LHMRKALRLQRGWGQQIIFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGAD 83 +++RK W QQ++F+ P ++ F IV+ PF+LGFY+S T WNGLDLDKA W G D Sbjct: 1 MNLRKR---SNEWIQQLVFVGPGMIVFTIIVLIPFLLGFYFSFTEWNGLDLDKAKWIGMD 57 Query: 84 NWKRIFTNDDKFWDSLFFTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNV 143 N RIFTNDDKFW S FTL+FTVV+V+ + + LRTIFF+PN+ Sbjct: 58 NIHRIFTNDDKFWASFKFTLKFTVVTVVVTNVLALILGLLLTRPMRGRNTLRTIFFLPNM 117 Query: 144 IGGILLGYIWQFIFTKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVI 203 IGGILLGYIWQFIFTKGF TIGEMTG FF+LPWLGT TGFWGLVIVFVWQT GYMMVI Sbjct: 118 IGGILLGYIWQFIFTKGFKTIGEMTGWHFFELPWLGTPETGFWGLVIVFVWQTTGYMMVI 177 Query: 204 YIAGLAGIPKDLIEAAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSL 263 YIA + G+PKDL+EAA IDGA Q + V +PL+MP+IT+CLFLTTS AFKMFDLNLSL Sbjct: 178 YIAAIVGVPKDLMEAATIDGATYFQTVRKVIMPLVMPAITVCLFLTTSGAFKMFDLNLSL 237 Query: 264 TKGGPGTSTQSLAYNIYAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVSA 321 TKGGPGTSTQSLAYNIYAEAL+NNRYGLGTAKA+LFFFAVS+I VTQVWLTKRKEV A Sbjct: 238 TKGGPGTSTQSLAYNIYAEALVNNRYGLGTAKAMLFFFAVSIIAVTQVWLTKRKEVEA 295 >B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 170/284 (59%), Positives = 210/284 (73%), Gaps = 1/284 (0%) Query: 38 QQIIFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWD 97 QQ +F+ P+ +FF+ I++ PF+LG YYS TNWNG+ K + G DN+ IFTNDDKF D Sbjct: 11 QQFLFVGPSTIFFILIMIIPFLLGLYYSFTNWNGVS-SKIDFVGFDNFVTIFTNDDKFRD 69 Query: 98 SLFFTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGILLGYIWQFIF 157 + +FT RFTV+ VI KT+ VLRTIFFMPNVIGG+LLG+IWQFIF Sbjct: 70 AFWFTTRFTVLGVILTNLLGFILAYFLTKPLKTRNVLRTIFFMPNVIGGLLLGFIWQFIF 129 Query: 158 TKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIE 217 KGFA IG T + FF LPWLGT GT FW +VIVFVWQTAGY+MVIYI+ L +PKD++E Sbjct: 130 VKGFAAIGNATNLGFFNLPWLGTKGTAFWAIVIVFVWQTAGYLMVIYISSLNNVPKDILE 189 Query: 218 AAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAY 277 AA+IDGA Q+ +S+ +PL+MP++T+CLFL S +FKMFDLNLSLTKGGP ST+S+A Sbjct: 190 AAEIDGASRGQVLRSIIIPLVMPAVTVCLFLAISWSFKMFDLNLSLTKGGPFGSTESVAM 249 Query: 278 NIYAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVSA 321 NIY EA NNR GLGTAKA++FF V++IT QV TK KEV A Sbjct: 250 NIYNEAYTNNRLGLGTAKAVIFFIVVAIITSLQVRFTKSKEVEA 293 >B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/284 (58%), Positives = 213/284 (75%), Gaps = 1/284 (0%) Query: 38 QQIIFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWD 97 QQ++++ PALLFF ++ PF++G YYS T+WNG+ W G DN+K+IFTND F Sbjct: 11 QQLVYIGPALLFFGITIIIPFVMGMYYSFTDWNGVS-GNVEWVGLDNFKQIFTNDSAFAQ 69 Query: 98 SLFFTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGILLGYIWQFIF 157 S +FT +FT+V V+ + + LRTIFFMPNVIGG+LLG+IWQFIF Sbjct: 70 SFWFTTKFTIVGVLLTNLVGFFLAYFLTKNIRARNWLRTIFFMPNVIGGLLLGFIWQFIF 129 Query: 158 TKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIE 217 KGFAT+GE TGI FF LPWLG TGFWG+++VFVWQ++GY+MVIYIA + + K+++E Sbjct: 130 IKGFATVGEATGIPFFNLPWLGDEVTGFWGIIMVFVWQSSGYLMVIYIASITNVSKEVME 189 Query: 218 AAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAY 277 AA+IDGA Q+ KS+ VPLIMP++T+CLFL S +FKMFDLNLSLTKGGP ST+SLA Sbjct: 190 AAEIDGANRFQVLKSIIVPLIMPAVTVCLFLAISWSFKMFDLNLSLTKGGPYRSTESLAM 249 Query: 278 NIYAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVSA 321 N+Y EA +NNRYGLGTAK+L+FF V++IT+ QV LTK+KEV A Sbjct: 250 NVYNEAFLNNRYGLGTAKSLIFFLVVAVITLIQVRLTKQKEVEA 293 >A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system permease Length = 313 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 154/280 (55%), Positives = 200/280 (71%), Gaps = 1/280 (0%) Query: 42 FLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLDKAVWTGADNWKRIFTNDDKFWDSLFF 101 F+ PALLFFL I + PF++G YYS T+WNG+ W G +N+K+IF++D F++S F Sbjct: 35 FVGPALLFFLVIQIIPFLMGLYYSFTSWNGVS-SAVEWVGIENYKKIFSDDPVFFNSFMF 93 Query: 102 TLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLRTIFFMPNVIGGILLGYIWQFIFTKGF 161 T +F +V+ KT+ +LRT+FF+PNVIGG+LLG+IWQFIF KGF Sbjct: 94 TTKFMFAAVLISNLLGFSFALLLNAALKTRNILRTVFFIPNVIGGLLLGFIWQFIFVKGF 153 Query: 162 ATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQTAGYMMVIYIAGLAGIPKDLIEAAKI 221 A++G MT I FF++PWLG T FWG+VIVF WQ +GYMMVIY+A L G+ L+EAAK+ Sbjct: 154 ASLGNMTDIGFFKMPWLGDETTAFWGIVIVFAWQISGYMMVIYVAALQGVDNSLLEAAKM 213 Query: 222 DGARAPQLFKSVYVPLIMPSITICLFLTTSNAFKMFDLNLSLTKGGPGTSTQSLAYNIYA 281 DGA A + + +PLI+P+ TIC FLT S AFK+FDLN+SLT GGP STQS+A NIY Sbjct: 214 DGASAWAVLTRIIIPLILPAFTICFFLTISMAFKIFDLNISLTGGGPFNSTQSVAINIYQ 273 Query: 282 EALINNRYGLGTAKALLFFFAVSLITVTQVWLTKRKEVSA 321 EA NNRYGLGTAK++LFF V++ T QV +TK+KEV A Sbjct: 274 EAFQNNRYGLGTAKSILFFVVVAIFTTVQVMVTKKKEVEA 313 >Q2BAB4.1 Q2BAB4_9BACI Multiple sugar-binding transport system permease Length = 340 Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 163/306 (53%), Positives = 206/306 (67%), Gaps = 3/306 (0%) Query: 16 KINYIKRRLHMRKALRLQRGWGQQIIFLWPALLFFLTIVVTPFILGFYYSSTNWNGLDLD 75 K + + +R RKA RL R F PA+LFF+ I V PF++G YYS T+WNG+ Sbjct: 38 KADAVTKRTSKRKA-RL-RSILIYAAFTGPAILFFVLIQVIPFLMGLYYSFTSWNGVS-S 94 Query: 76 KAVWTGADNWKRIFTNDDKFWDSLFFTLRFTVVSVIXXXXXXXXXXXXXXXXXKTKKVLR 135 W G N+ +IF +D F+ S FT +F + SV+ KT+ +LR Sbjct: 95 AVEWVGLQNYIKIFKDDPNFFQSFLFTTKFMLASVVISNLIGFGLALLLNAALKTRNILR 154 Query: 136 TIFFMPNVIGGILLGYIWQFIFTKGFATIGEMTGISFFQLPWLGTAGTGFWGLVIVFVWQ 195 T+FF+PNVIGG+LLG+IWQFIF K FA+IG +TG++FF+L WLG T FWG+VIVF WQ Sbjct: 155 TVFFIPNVIGGLLLGFIWQFIFVKAFASIGNLTGLAFFKLAWLGDETTAFWGIVIVFAWQ 214 Query: 196 TAGYMMVIYIAGLAGIPKDLIEAAKIDGARAPQLFKSVYVPLIMPSITICLFLTTSNAFK 255 +GYMMVIYIA L G+ L+EAA+IDGA L + +PLI+P+ TIC FLT S AFK Sbjct: 215 VSGYMMVIYIAALQGVDHSLLEAARIDGASNWTLLTRIIIPLIIPAFTICFFLTISMAFK 274 Query: 256 MFDLNLSLTKGGPGTSTQSLAYNIYAEALINNRYGLGTAKALLFFFAVSLITVTQVWLTK 315 +FDLNLSLT GGP STQS+A NIY EA NNRYGLGTAK++LFF V++ T QV +TK Sbjct: 275 IFDLNLSLTNGGPFNSTQSVAINIYQEAFQNNRYGLGTAKSILFFLIVAVFTSVQVIMTK 334 Query: 316 RKEVSA 321 RKEV A Sbjct: 335 RKEVEA 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,822,180,510 Number of extensions: 73129586 Number of successful extensions: 245639 Number of sequences better than 1.0e-05: 5525 Number of HSP's gapped: 239722 Number of HSP's successfully gapped: 5525 Length of query: 321 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 186 Effective length of database: 1,788,859,178 Effective search space: 332727807108 Effective search space used: 332727807108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)