BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0009.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7N8.1 B1D7N8_9BACL Binding-protein-dependent transport system... 363 8e-99 B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport system... 359 2e-97 B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport system... 327 7e-88 A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system pe... 324 5e-87 Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system pe... 305 2e-81 >B1D7N8.1 B1D7N8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 363 bits (932), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 174/252 (69%), Positives = 211/252 (83%) Query: 27 PFYLVLSNSVKRLKEILIDAASFPQVFHWDNYSKVWDAINFPQAFWNSLQITVLSVIFIV 86 PFY VL NSVK L EI++DAAS P + + NYSKVWD I FP+A NS+ IT +SV IV Sbjct: 25 PFYFVLVNSVKGLGEIMVDAASLPDKYLFTNYSKVWDIIKFPKALLNSVLITGISVAGIV 84 Query: 87 MFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLMLQLVRVTSMLELRGELYGIVACY 146 + S+M Y++VRKP+ FN +F +SAMIIPFQS+MLQLVRVTS LELR ++GIV CY Sbjct: 85 IISAMTGYRLVRKPTLFNKILFTAFISAMIIPFQSVMLQLVRVTSFLELRANMFGIVVCY 144 Query: 147 LGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGVFFKIVFPLLMPIIVTVIILNTLW 206 LGFG+ LSVFLFHGFIKSVP+E+EEAA VDG SPYGVF++IVFPLL PIIVTVIILN LW Sbjct: 145 LGFGLSLSVFLFHGFIKSVPLEIEEAAVVDGCSPYGVFWRIVFPLLRPIIVTVIILNGLW 204 Query: 207 IWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWDLALAGLVMAITPILLFFLSLQRY 266 IWNDYLLPVL+IG NKDLTT+P+A+T+FFGQYTK+WDLALAGL M I PI++ FL LQ++ Sbjct: 205 IWNDYLLPVLIIGSNKDLTTIPLAITRFFGQYTKQWDLALAGLTMGIMPIIVMFLMLQKH 264 Query: 267 IVEGVTAGSIKG 278 I+EG+++GS+KG Sbjct: 265 IIEGISSGSLKG 276 >B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 165/279 (59%), Positives = 219/279 (78%), Gaps = 2/279 (0%) Query: 1 MQTSR-YRLNHFILEIFAILLAVVFLSPFYLVLSNSVKRLKEILIDAASFPQVFHWDNYS 59 M+T+R YRLN EI +++A++FL PFY + NSVK E+L D+A P F W NYS Sbjct: 1 METTRKYRLNTMATEIIMVIVALLFLVPFYFLFVNSVKTFGELLTDSAGLPTTFEWSNYS 60 Query: 60 KVWDAINFPQAFWNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPF 119 + WD NFPQAFWNSL +TV S + + M S+M AYQ+VR+ +RFN +F L V+AM+IPF Sbjct: 61 RAWDITNFPQAFWNSLVVTVASNLLLAMLSAMTAYQMVRRNTRFNQIMFALFVAAMVIPF 120 Query: 120 QSLMLQLVRVTSMLELRGELYGIVACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDGSS 179 QS+M+ LV+VT+ L + LYG++ CYLGFG+PLSVFLFHGF+KS+P+E+EEAA VDGSS Sbjct: 121 QSIMIPLVKVTATLGINNSLYGLIICYLGFGVPLSVFLFHGFVKSIPMEIEEAATVDGSS 180 Query: 180 PYGVFFKIVFPLLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYT 239 YGVFF++VFPL+ P+ VTVIILNTLWIWNDYLLP L++ + +L T+P+A FFGQYT Sbjct: 181 GYGVFFRVVFPLMKPMFVTVIILNTLWIWNDYLLPSLIL-QSAELRTIPIATFAFFGQYT 239 Query: 240 KKWDLALAGLVMAITPILLFFLSLQRYIVEGVTAGSIKG 278 K+WDLAL LV+ I P++LFFL++Q+YI+EG+T G++KG Sbjct: 240 KQWDLALPALVLGIMPVILFFLAMQKYIIEGITQGAVKG 278 >B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 327 bits (838), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 152/267 (56%), Positives = 214/267 (80%), Gaps = 1/267 (0%) Query: 12 ILEIFAILLAVVFLSPFYLVLSNSVKRLKEILIDAASFPQVFHWDNYSKVWDAINFPQAF 71 +L+I +++A++FL+PFY +L NSVK L +I++DAA++P FH+DNYSK W+ FP+AF Sbjct: 14 VLQIVMVIVALIFLAPFYFLLVNSVKSLGDIMVDAANWPTAFHFDNYSKAWEMTRFPEAF 73 Query: 72 WNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLMLQLVRVTS 131 NS+ ITV+S + I + S+MAAY++VR +RFN VF+L VSAM+IPFQS+M+ L++V + Sbjct: 74 TNSIIITVISNLIIALLSAMAAYRMVRSNTRFNRIVFMLFVSAMVIPFQSIMIPLLQVIN 133 Query: 132 MLELRGELYGIVACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGVFFKIVFPL 191 L + + G++ YLG G+PLSVFLFHGF+K +P+E+EEAA VDG+SP+ VF +IV P+ Sbjct: 134 FLGVNNSIVGLILSYLGLGIPLSVFLFHGFVKGIPLEIEEAATVDGASPFRVFARIVMPM 193 Query: 192 LMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWDLALAGLVM 251 L P++VTVIILN LW+WNDYLLP L++ + +L T+P+A FFGQY+K+WD+AL LV+ Sbjct: 194 LKPMMVTVIILNCLWVWNDYLLPSLIL-QSPELRTIPLATFAFFGQYSKQWDMALPALVL 252 Query: 252 AITPILLFFLSLQRYIVEGVTAGSIKG 278 ITPI++FFLSLQ+YIVEGV AGS+KG Sbjct: 253 GITPIIIFFLSLQKYIVEGVAAGSVKG 279 >A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 154/274 (56%), Positives = 216/274 (78%), Gaps = 1/274 (0%) Query: 4 SRYRLNHFILEIFAILLAVVFLSPFYLVLSNSVKRLKEILIDAASFPQVFHWDNYSKVWD 63 +RY F+LEI I + ++FL PFY VL NSVK ILIDAA++P+ F + NY+KVW+ Sbjct: 3 NRYTKKTFVLEIIGITVGLIFLIPFYFVLVNSVKPFAAILIDAAAWPKEFLFSNYAKVWE 62 Query: 64 AINFPQAFWNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLM 123 INFP+AFWNSL ITV S I +V+ SSMAA+++VR P +F+ +F++ VSAM+IPFQ++M Sbjct: 63 IINFPRAFWNSLVITVFSNIGLVIISSMAAWKMVRTPGKFSKILFIIFVSAMVIPFQTVM 122 Query: 124 LQLVRVTSMLELRGELYGIVACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGV 183 + L+++ L L + G++ Y GFG+PLS+FLFHGF+K+VP+E+EE+A +DG S +GV Sbjct: 123 IPLMKLGGALNLTNSIPGLIIMYFGFGVPLSLFLFHGFVKTVPMEIEESAMIDGCSQFGV 182 Query: 184 FFKIVFPLLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWD 243 F++IVFPLL PI VTVIILNTLWIWNDYLLP+LV+ + +L T+P+A + FF QYTK+WD Sbjct: 183 FWRIVFPLLKPITVTVIILNTLWIWNDYLLPLLVL-QDAELRTIPLAASSFFAQYTKQWD 241 Query: 244 LALAGLVMAITPILLFFLSLQRYIVEGVTAGSIK 277 + LA LV+ ITP+++FFL LQ++I++G+ +GSIK Sbjct: 242 MGLAALVLGITPVIIFFLFLQKHIIKGIASGSIK 275 >Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/251 (57%), Positives = 201/251 (80%), Gaps = 1/251 (0%) Query: 27 PFYLVLSNSVKRLKEILIDAASFPQVFHWDNYSKVWDAINFPQAFWNSLQITVLSVIFIV 86 PFY V NSVK EIL+DAA+FP+ + NYSKVW+ INFP+AFWNSL ITVLS I +V Sbjct: 26 PFYFVAVNSVKSFAEILLDAAAFPKEVLFANYSKVWEIINFPRAFWNSLIITVLSNIGLV 85 Query: 87 MFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLMLQLVRVTSMLELRGELYGIVACY 146 + SSMAA+++VR P RF+ +F+L VSAM+IPFQ++M+ L+++ L + + G++ Y Sbjct: 86 IISSMAAWKMVRTPGRFSKILFILFVSAMVIPFQTVMIPLMKLGGALNMTNSIPGLIMMY 145 Query: 147 LGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGVFFKIVFPLLMPIIVTVIILNTLW 206 GFG+PLS+FL+HGF+K+VP E+EE+A +DG S +GVF++IVFPLL PI VTV+ILNTLW Sbjct: 146 FGFGVPLSLFLYHGFVKTVPREIEESALIDGCSQFGVFWRIVFPLLKPITVTVVILNTLW 205 Query: 207 IWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWDLALAGLVMAITPILLFFLSLQRY 266 IWND+LLP+LV+ + +L T+P+A + FF QYTK+WD+ LA LV+ ITP+++FFL LQ++ Sbjct: 206 IWNDFLLPLLVL-QDAELRTIPLATSSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKH 264 Query: 267 IVEGVTAGSIK 277 I++G+ +GSIK Sbjct: 265 IIKGIASGSIK 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,542,031,448 Number of extensions: 61511344 Number of successful extensions: 266175 Number of sequences better than 1.0e-05: 6896 Number of HSP's gapped: 258416 Number of HSP's successfully gapped: 6897 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)