BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0008.p (435 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7N9.1 B1D7N9_9BACL Extracellular solute-binding protein family 1 441 e-122 B3K4S5.1 B3K4S5_9BACI Extracellular solute-binding protein family 1 328 5e-88 B1YJN7.1 B1YJN7_EXIS2 Extracellular solute-binding protein family 1 322 4e-86 Q2BAB2.1 Q2BAB2_9BACI Multiple sugar-binding transport system mu... 320 2e-85 A6CLU8.1 A6CLU8_9BACI Multiple sugar-binding transport system mu... 319 4e-85 >B1D7N9.1 B1D7N9_9BACL Extracellular solute-binding protein family 1 Length = 437 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/383 (56%), Positives = 267/383 (69%) Query: 53 DVTIKMFQFKVEIAEQLNALAXXXXXXXXXXXXXXXXXXXXDYGALLKAELASGSEPEIF 112 DV IK+FQFKVEIA+ LN +A DY ALLKAE+ASGSEPEIF Sbjct: 55 DVKIKVFQFKVEIADALNRMAEEYEKETGVKVEVETHGGGEDYNALLKAEIASGSEPEIF 114 Query: 113 NNGGYTALVPYMDRATDLSNEPWVANLIPTAKTPATVDGKLYGMPMNVEGYGLIYNKDLF 172 N+ GY AL Y DRATDLS EPW ++IP A PA VDGKL GMPMN+EGYG+ YNKDLF Sbjct: 115 NSEGYAALEAYYDRATDLSGEPWAKDVIPAAAGPAQVDGKLLGMPMNIEGYGIFYNKDLF 174 Query: 173 TKAGITEEPKTLSQXXXXXXXXXXXGITPFEATNEWWSMGMHLVNVGLAHQPDPKKFIDD 232 KAGIT PKTL++ GITPF TNEWWS+G H +NVGLA QPDP FI+ Sbjct: 175 EKAGITTLPKTLTELEDAAKKLQAAGITPFSTTNEWWSIGHHTINVGLAEQPDPIAFING 234 Query: 233 LKAGTQTFKDNAVFKQWLDLVDVIFDNAQDNKMTTDYATQIADFASGKAAMMMQGNWTQG 292 K G+ FKDN VFK+W++ VDV+F +Q +K+TTDYATQ+A+FASGKAAM+ QGNW QG Sbjct: 235 TKDGSANFKDNDVFKKWINYVDVVFKYSQKDKLTTDYATQVANFASGKAAMIQQGNWIQG 294 Query: 293 DIDKIXXXXXXXXXXXXXXXEEGTILVGVPNNYIVNSKSAHPEEAKAFLNWLVSSETGKK 352 D+DK+ I G N +IVNSKS + EEAK FL+W+V+S+TGK Sbjct: 295 DVDKVAKLNVGLLPIPIDDSGNAHIYTGPANFWIVNSKSKNAEEAKKFLDWMVTSDTGKS 354 Query: 353 YLTKEFKFIPAETNVETDAADIGQVAVAVQEQSDKALGWNWDMFPDGVTQGFGAAMQEYL 412 YLTKEFKFIPA T+++ A +IGQ+ VAV EQ+ A GW+W +PDGV QG+GAAMQEY Sbjct: 355 YLTKEFKFIPALTSIKPTADEIGQMGVAVSEQAATAGGWHWGRYPDGVPQGWGAAMQEYQ 414 Query: 413 GGQLNHDQLLEKLDKSVQDIVKQ 435 GG ++ DQL +KL+K++QDIV + Sbjct: 415 GGSIDKDQLFDKLEKAIQDIVAK 437 >B3K4S5.1 B3K4S5_9BACI Extracellular solute-binding protein family 1 Length = 429 Score = 328 bits (842), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 178/381 (46%), Positives = 228/381 (59%), Gaps = 7/381 (1%) Query: 55 TIKMFQFKVEIAEQLNAL-AXXXXXXXXXXXXXXXXXXXXDYGALLKAELASGSEPEIFN 113 TIK+FQFKVEIAE LN L A DYGA LKA+ ASG EP+IFN Sbjct: 42 TIKIFQFKVEIAEALNKLKAEYEKEHPGIKLDIQTVGGGSDYGAALKAKFASGDEPDIFN 101 Query: 114 NGGYTALVPYMDRATDLSNEPWVANLIPTAKTPATVDGKLYGMPMNVEGYGLIYNKDLFT 173 GGY L + + DLS++PWV +++ AK P T DGKLYG PM +EGYG IYNKDLF Sbjct: 102 VGGYRDLETWFENVEDLSDQPWVKDVVDVAKEPMTKDGKLYGQPMTIEGYGFIYNKDLFE 161 Query: 174 KAGITEEPKTLSQXXXXXXXXXXXGITPF-EATNEWWSMGMHLVNVGLAHQPDPKKFIDD 232 +AGITE PKTL++ GITPF E W + HL+N+ AHQ DP F+ Sbjct: 162 QAGITELPKTLTELEEAAKKLQAAGITPFVNGYQETWILANHLLNIPFAHQEDPDAFVKG 221 Query: 233 LKAGTQTFKDNAVFKQWLDLVDVIFDNAQDNKMTTDYATQIADFASGKAAMMMQGNWTQG 292 + GT+ NA F +W+ L D+ Q N +TTDY T+I FASG+AAM GNWTQ Sbjct: 222 MNEGTEKLVGNAKFDEWMRLFDLTVQYGQKNPLTTDYNTEITTFASGEAAMTQNGNWTQV 281 Query: 293 DIDKIX---XXXXXXXXXXXXXXEEGTILVGVPNNYIVNSKSAHPEEAKAFLNWLVSSET 349 ID I E + VGVPNN++VN+KS +EAK FLNWLV+SET Sbjct: 282 QIDGINPDLNIGLLPMPINDNAEENDKLPVGVPNNWVVNNKSKVKDEAKEFLNWLVTSET 341 Query: 350 GKKYLTKEFKFIPAETNVETDAADIGQVAVAVQE--QSDKALGWNWDMFPDGVTQGFGAA 407 GK+Y+T+EFKFIPA T++E ++ +G + V + Q +KAL W ++ FPDG FG+ Sbjct: 342 GKRYITEEFKFIPALTSIEANSETLGDLGNDVMKYSQENKALSWEFNKFPDGGMNEFGSQ 401 Query: 408 MQEYLGGQLNHDQLLEKLDKS 428 MQ Y+ G ++ QL E + KS Sbjct: 402 MQGYVAGNVDKTQLFEGIQKS 422 >B1YJN7.1 B1YJN7_EXIS2 Extracellular solute-binding protein family 1 Length = 428 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 164/386 (42%), Positives = 232/386 (60%), Gaps = 8/386 (2%) Query: 55 TIKMFQFKVEIAEQLNALAXXXXXXXXXXXXXXXXXXXXDYGALLKAELASGSEPEIFNN 114 T+ +FQFK EIA+ + +A DYGA LK++ ASG+EP++FNN Sbjct: 45 TLNVFQFKAEIAKDMEKMAKAYEKETGVKVVVQTVGGGSDYGAALKSQFASGNEPDVFNN 104 Query: 115 GGYTALVPYMDRATDLSNEPWVANLIPTAKTPATVDGKLYGMPMNVEGYGLIYNKDLFTK 174 GG+T + D+ DLS+E WV++L +K P T+DGKLYGMPMN+EGYG IYNK++F K Sbjct: 105 GGFTEAKTWQDKLEDLSDEKWVSDLTDLSKEPMTIDGKLYGMPMNLEGYGFIYNKEIFKK 164 Query: 175 AGITEEPKTLSQXXXXXXXXXXXGITPFE-ATNEWWSMGMHLVNVGLAHQPDPKKFIDDL 233 AGITE PKTL++ G+TPF EWW +G HL+N+ +A Q DP +FI DL Sbjct: 165 AGITELPKTLTELTEASKKLKADGVTPFSIGYGEWWILGNHLMNIPMAQQDDPDQFIADL 224 Query: 234 KAGTQTFKDNAVFKQWLDLVDVIFDNAQDNKMTTDYATQIADFASGKAAMMMQGNWTQ-- 291 +G F+DN FK++++L D+ + N +TTDY TQ++ FA GK AM+ QGNW Q Sbjct: 225 NSGKGKFEDNKQFKEFMNLFDLTIEYGNKNPLTTDYNTQVSQFAEGKTAMIQQGNWAQQL 284 Query: 292 -GDIDKIXXXXXXXXXXXXXXXEEGTILVGVPNNYIVNSKSAHPEEAKAFLNWLVSSETG 350 D++ + + VGVPNN++VN S + EE K FL W+ +S+TG Sbjct: 285 ITDVNPDIEMGFIPMPINDDKEKMDRLPVGVPNNWVVNKNSKNKEEGKKFLEWMATSDTG 344 Query: 351 KKYLTKEFKFIPAETNVETDAADIGQVA--VAVQEQSDKALGWNWDMFPDGVTQGFGAAM 408 K Y+ +FKFIPA ++E AAD+G +A + + DK + WNW +PDG FGA M Sbjct: 345 KDYMVNKFKFIPAFKSIE--AADLGPLADDIIKYSKEDKTISWNWFKYPDGAVNEFGAIM 402 Query: 409 QEYLGGQLNHDQLLEKLDKSVQDIVK 434 Q Y+G Q +++L+ K+ Q + K Sbjct: 403 QAYVGKQKTSEEMLQDFTKTWQKMKK 428 >Q2BAB2.1 Q2BAB2_9BACI Multiple sugar-binding transport system multiple sugar-binding protein Length = 429 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 167/381 (43%), Positives = 231/381 (60%), Gaps = 7/381 (1%) Query: 54 VTIKMFQFKVEIAEQLNAL-AXXXXXXXXXXXXXXXXXXXXDYGALLKAELASGSEPEIF 112 VT+ +FQFKVEIA+QL + DYGA LKA+ ASG +P+IF Sbjct: 45 VTLNLFQFKVEIADQLQEMITEFEAEHPNIKVKLETVGGGADYGAALKAKFASGEQPDIF 104 Query: 113 NNGGYTALVPYMDRATDLSNEPWVANLIPTAKTPAT-VDGKLYGMPMNVEGYGLIYNKDL 171 NNGG+ L + + DLSNEPWV +L+P K P T DGKLYGMP+N+EGYG +YNKDL Sbjct: 105 NNGGFKELELWKEHLADLSNEPWVEHLLPIGKVPMTDTDGKLYGMPVNLEGYGFVYNKDL 164 Query: 172 FTKAGITEEPKTLSQXXXXXXXXXXXGITPFEA-TNEWWSMGMHLVNVGLAHQPDPKKFI 230 F KAGI E P +++ G TPF A EWW +G HL+N+ A Q DP FI Sbjct: 165 FEKAGIKEPPANITELKDAAEKLKDSGTTPFSAGYGEWWVIGQHLLNIPFAQQEDPIAFI 224 Query: 231 DDLKAGTQTFKDNAVFKQWLDLVDVIFDNAQDNKMTTDYATQIADFASGKAAMMMQGNWT 290 + L GT+ F DN FKQ+ +++D + DN +TTDY TQ+ FA+G+ AM+ QGNWT Sbjct: 225 EGLYDGTEKFTDNEQFKQFKEVLDTEINFGNDNPLTTDYNTQVTQFAAGQTAMLQQGNWT 284 Query: 291 QGDIDKIXXXXXXXXXXXXXXXEEGT--ILVGVPNNYIVNSKSAHPEEAKAFLNWLVSSE 348 + I ++ ++ + VGVPNN+++N S H +EAK FL W+VSS+ Sbjct: 285 ENMIYEVNPDMNMGFLPIPISDDKNADRLPVGVPNNWVLNKNSEHLDEAKLFLEWMVSSD 344 Query: 349 TGKKYLTKEFKFIPAETNVETDA-ADIGQVAVAVQEQSDKALGWNWDMFPDGVTQGFGAA 407 TGK+YLT+EF FIPA N+E D+GQ ++ + +K + W W +PDG + F A+ Sbjct: 345 TGKRYLTEEFAFIPAFDNIEASGLGDLGQ-SILEYSKEEKTIPWTWFRWPDGANKEFAAS 403 Query: 408 MQEYLGGQLNHDQLLEKLDKS 428 +QEY G++++D LLE+ K+ Sbjct: 404 IQEYAAGKIDYDTLLERFQKT 424 >A6CLU8.1 A6CLU8_9BACI Multiple sugar-binding transport system multiple sugar-binding protein Length = 446 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 170/378 (44%), Positives = 230/378 (60%), Gaps = 7/378 (1%) Query: 54 VTIKMFQFKVEIAEQL-NALAXXXXXXXXXXXXXXXXXXXXDYGALLKAELASGSEPEIF 112 VT+ FQFKVEIA+QL + DYGA LKA+ ASG EP+IF Sbjct: 62 VTLNFFQFKVEIADQLAEMIKEFEAEHPNIKVKLETVGGGADYGAGLKAKFASGEEPDIF 121 Query: 113 NNGGYTALVPYMDRATDLSNEPWVANLIPTAKTPAT-VDGKLYGMPMNVEGYGLIYNKDL 171 NNGG+ L + ++ DLS+EPWV +++P K P T DGKLYGMP+N+EGYG +YNKDL Sbjct: 122 NNGGFKELELWKEKLADLSDEPWVEHVLPIGKVPMTDEDGKLYGMPVNLEGYGFVYNKDL 181 Query: 172 FTKAGITEEPKTLSQXXXXXXXXXXXGITPFEA-TNEWWSMGMHLVNVGLAHQPDPKKFI 230 F KAGITE P T+ + GITPF A EWW +G HL+N+ A Q DP FI Sbjct: 182 FEKAGITEPPGTIDELKDASEKLEAAGITPFSAGYGEWWVIGQHLLNIPFAQQEDPVAFI 241 Query: 231 DDLKAGTQTFKDNAVFKQWLDLVDVIFDNAQDNKMTTDYATQIADFASGKAAMMMQGNWT 290 + L G++T N FKQ+ +++D A DN +TTDY TQ+ FASG+ AM+ QGNWT Sbjct: 242 EGLYDGSETIVGNEKFKQFKEVLDTELKYANDNPLTTDYNTQVTLFASGETAMLQQGNWT 301 Query: 291 QGDIDKIXXXXXXXXXXXXXXXEEGT--ILVGVPNNYIVNSKSAHPEEAKAFLNWLVSSE 348 + I +I ++ + VGVPNN+++N S H EEAK FL W+V+SE Sbjct: 302 ENMIYEINPDMNMGFLPIPISNDDSADRLPVGVPNNWVLNKNSEHLEEAKTFLEWMVTSE 361 Query: 349 TGKKYLTKEFKFIPAETNVETDA-ADIGQVAVAVQEQSDKALGWNWDMFPDGVTQGFGAA 407 TGK+Y+T+EF FIPA N+E D+GQ + ++ +K + W W +PDG + F AA Sbjct: 362 TGKRYITEEFSFIPAFDNIEPAGLGDLGQSILEFSKE-EKTIPWTWFRWPDGANKEFAAA 420 Query: 408 MQEYLGGQLNHDQLLEKL 425 +QEY G++++D LLE+ Sbjct: 421 IQEYAAGKIDYDTLLERF 438 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,100,655,587 Number of extensions: 78771401 Number of successful extensions: 174449 Number of sequences better than 1.0e-05: 291 Number of HSP's gapped: 174276 Number of HSP's successfully gapped: 292 Length of query: 435 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 296 Effective length of database: 1,751,175,118 Effective search space: 518347834928 Effective search space used: 518347834928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)