BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0006.p (563 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DB75.1 B1DB75_9BACL Glutaminyl-tRNA synthetase 760 0.0 B3K673.1 B3K673_9BACI Glutaminyl-tRNA synthetase 719 0.0 A7AZC6.1 A7AZC6_RUMGN Putative uncharacterized protein 655 0.0 A5Z4N9.1 A5Z4N9_9FIRM Putative uncharacterized protein 650 0.0 A6BKJ4.1 A6BKJ4_9FIRM Putative uncharacterized protein 650 0.0 >B1DB75.1 B1DB75_9BACL Glutaminyl-tRNA synthetase Length = 558 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/557 (65%), Positives = 438/557 (78%), Gaps = 3/557 (0%) Query: 4 DNAMETAAAENYMDKLIKEDIESGIYSREICTRFPPEPNGYLHIGSAFAIHTNYGLAHKY 63 DN+ E AE++M +LI E++E +SRE+ TRFPPEPNGYLHIGSA+AI TN +A + Sbjct: 2 DNSKE-HLAEHHMFRLISEELERKPFSREMRTRFPPEPNGYLHIGSAYAILTNAMIAQNF 60 Query: 64 GGTFHLRFDDTNPLKEDMEYVKAIIQDIEWLGCSPGEHIYYGSDYSEQIYNSALNLIRKG 123 GGTFHLRFDDTNPLKED+EYV AII+DI+WLG +P EHIYYGSDY+E+I+++A+ LI+KG Sbjct: 61 GGTFHLRFDDTNPLKEDIEYVNAIIEDIKWLGVNPKEHIYYGSDYAEKIFDAAITLIKKG 120 Query: 124 KAYVCDLSPEEVTAYRGTLTEPGKNSPYRERSVEENLRLFSGMREGAYPTGSRVLRAKID 183 KA+VCDL+P+E+T YRGTLTEPG+NSPYR RS EENL LF+ M+ GA+P GS+VLRAKI+ Sbjct: 121 KAFVCDLTPDELTEYRGTLTEPGRNSPYRGRSAEENLELFAKMKNGAFPAGSKVLRAKIN 180 Query: 184 MSSPNINLRDPVIYRIIHAEHYRTGNAWCIYPMYDFAHPIQDAIEGITHSLCSLEFKDHR 243 M+SPNINLRDPV+YRI++AEHYRT WCIYPMYDFAHPIQDAIEGIT+SLCS+EFKDHR Sbjct: 181 MASPNINLRDPVLYRILYAEHYRTKRDWCIYPMYDFAHPIQDAIEGITYSLCSIEFKDHR 240 Query: 244 PLYEWVLEELGIEEAPRQREFGRVNLTGVVTGKRYLRALVAGNYVDGWDDXXXXXXXXXX 303 PLYEWVL EL I E PRQREFGR++LTGVVT KR+LR LV G +VDGWDD Sbjct: 241 PLYEWVLNELEIAEPPRQREFGRLSLTGVVTSKRFLRQLVEGGFVDGWDDPRLPTLRGLR 300 Query: 304 XXXXXXESIRSFVREIGMVRNQTMVDFSMLEHCLRQDLKASVPSIMAVLDPLKVVITNYE 363 ESI F+ EIG +RNQ+ VD S+L+H +RQDLK S+MAVL+PLKV ITNY Sbjct: 301 RRGYTPESIHDFIEEIGSIRNQSTVDISLLDHFVRQDLKEKAASVMAVLEPLKVTITNYP 360 Query: 364 AGETEWLPLANNSENAELGVREVPFSGTVYIERDDFMEEPAPGFRRLVPGGEVRLKGAYI 423 E L + NN EN LG REVPFS T+YIER+DFMEEP G+ RL PGGEVRLKGAY Sbjct: 361 EEAEEMLLVENNGENVALGTREVPFSRTIYIEREDFMEEPPKGYHRLRPGGEVRLKGAYF 420 Query: 424 IKCNEVIKDAGTGAVRELRCTYDPLTKSGGANSGRKVKGTLHWVSASHGIPAEVYLYEKL 483 I+C EV+KD +G + ELRCTYDPLTKSG +GRKVKGT+HWVSA+HGI A+V LY++L Sbjct: 421 IRCEEVVKDPVSGEIMELRCTYDPLTKSGSGFTGRKVKGTIHWVSAAHGIRADVNLYDQL 480 Query: 484 LEDNEGPKAEGETWEEYINPDSIRLMLSCLLEPFAAGAKPEDKFQFMRQGYFCVDNKLSR 543 L D E PK +GE W INPDS+ + L+E A PE KFQF+R GYF VD K Sbjct: 481 LLDEELPK-DGEDWTSKINPDSL-VKKQILIEVHVKHAGPEQKFQFLRHGYFSVDTKPRT 538 Query: 544 EDRLVFNRIVPLKDTWK 560 +D+LVFNR+VPLKD+WK Sbjct: 539 DDQLVFNRVVPLKDSWK 555 >B3K673.1 B3K673_9BACI Glutaminyl-tRNA synthetase Length = 562 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/564 (60%), Positives = 419/564 (74%), Gaps = 4/564 (0%) Query: 1 MGNDNAMETAAAENYMDKLIKEDIESGIYSREICTRFPPEPNGYLHIGSAFAIHTNYGLA 60 M NDN E A +++ ++IKED+E+ +Y R + TRFPPEPNGYLHIGSA+AIH N+ +A Sbjct: 1 MSNDNNKEAEKA-DFLTRMIKEDVENNVYHRPVATRFPPEPNGYLHIGSAYAIHINHAIA 59 Query: 61 HKYGGTFHLRFDDTNPLKEDMEYVKAIIQDIEWLGCSPGEHIYYGSDYSEQIYNSALNLI 120 ++ GTF+LRFDDTNPLKEDM+YV AI +DIEWLG PG +Y+GSDY+ QI +A LI Sbjct: 60 SRFNGTFNLRFDDTNPLKEDMKYVDAIREDIEWLGLKPG--VYFGSDYAHQIAEAARKLI 117 Query: 121 RKGKAYVCDLSPEEVTAYRGTLTEPGKNSPYRERSVEENLRLFSGMREGAYPTGSRVLRA 180 KGKAYVCDL+PE++T YRGTLTE G NSP+RERS+EENL LF M G + T ++VLRA Sbjct: 118 TKGKAYVCDLTPEQMTEYRGTLTEAGMNSPFRERSIEENLSLFEQMLAGVFRTSAKVLRA 177 Query: 181 KIDMSSPNINLRDPVIYRIIHAEHYRTGNAWCIYPMYDFAHPIQDAIEGITHSLCSLEFK 240 KIDMSSPN+NLRDPV+YRIIHAEHYRTG WC+YPMYDFAHPIQD IEGITHSLCS EFK Sbjct: 178 KIDMSSPNMNLRDPVLYRIIHAEHYRTGTTWCVYPMYDFAHPIQDWIEGITHSLCSAEFK 237 Query: 241 DHRPLYEWVLEELGIEEAPRQREFGRVNLTGVVTGKRYLRALVAGNYVDGWDDXXXXXXX 300 +HRPLYEWVL EL + E P+QREFGR+N++G VT KRYLR LV G +VDGWDD Sbjct: 238 EHRPLYEWVLAELEVTEPPKQREFGRLNISGYVTSKRYLRELVEGGFVDGWDDPRLPTLK 297 Query: 301 XXXXXXXXXESIRSFVREIGMVRNQTMVDFSMLEHCLRQDLKASVPSIMAVLDPLKVVIT 360 E IR F+ E+G++R +MVD +ML+H +RQDLK + MAV++PLKV+IT Sbjct: 298 GLRRRGVTPEGIRHFLDELGVIRGNSMVDSAMLDHFIRQDLKDRCRNAMAVMNPLKVIIT 357 Query: 361 NYEAGETEWLPLANNSENAELGVREVPFSGTVYIERDDFMEEPAPGFRRLVPGGEVRLKG 420 N TE L + N+ + LG+REVPFS +YIER+DFMEEP PGF RL PG EVRLKG Sbjct: 358 NVPEDRTEMLSIPNHEHDEVLGMREVPFSRELYIEREDFMEEPEPGFHRLSPGKEVRLKG 417 Query: 421 AYIIKCNEVIKDAGTGAVRELRCTYDPLTKSGGANSGRKVKGTLHWVSASHGIPAEVYLY 480 AY IKC V+KD TG + E+ CTYDPLTKSG GRKVK TLHWVSA HGIPAE+ LY Sbjct: 418 AYFIKCEHVVKDPATGDIMEIHCTYDPLTKSGSGFKGRKVKSTLHWVSAKHGIPAELRLY 477 Query: 481 EKLLEDNEGPKAEGETWEEYINPDSIRLMLSCLLEPFAAGAKPEDKFQFMRQGYFCVDNK 540 + LL+++ W + +NPDS+ + +LEP A +QF+R GYFC+D+K Sbjct: 478 DTLLKESAELLESDNIWADLLNPDSLIRIKDAILEPSMKEAAMNRTYQFIRHGYFCLDSK 537 Query: 541 LSREDRLVFNRIVPLKDTW-KSGK 563 + E RLVFNR+V LKD+W K+GK Sbjct: 538 HATEHRLVFNRVVSLKDSWKKTGK 561 >A7AZC6.1 A7AZC6_RUMGN Putative uncharacterized protein Length = 572 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/554 (55%), Positives = 399/554 (72%), Gaps = 4/554 (0%) Query: 10 AAAENYMDKLIKEDIESGIYSREICTRFPPEPNGYLHIGSAFAIHTNYGLAHKYGGTFHL 69 A ++N++++ I +D+ G+Y +CTRFPPEPNGYLHIG A +I NYGLA KY GTFH+ Sbjct: 23 AVSKNFIEQEIDKDLAEGVYDH-VCTRFPPEPNGYLHIGHAKSILLNYGLAKKYNGTFHM 81 Query: 70 RFDDTNPLKEDMEYVKAIIQDIEWLGCSPGEHIYYGSDYSEQIYNSALNLIRKGKAYVCD 129 RFDDTNP KE +E+V +I +DI+WLG +H+Y+ SDY EQ+Y A+ LI+KGKAYVCD Sbjct: 82 RFDDTNPTKEKVEFVDSIKEDIQWLGADWEDHLYFASDYFEQMYECAVKLIKKGKAYVCD 141 Query: 130 LSPEEVTAYRGTLTEPGKNSPYRERSVEENLRLFSGMREGAYPTGSRVLRAKIDMSSPNI 189 L+PEE+ YRGTLTEPGKNSPYRERSVEENL LF M++G + G +VLRAKIDM+SPNI Sbjct: 142 LTPEEIREYRGTLTEPGKNSPYRERSVEENLELFEAMKDGKFKDGEKVLRAKIDMASPNI 201 Query: 190 NLRDPVIYRIIHAEHYRTGNAWCIYPMYDFAHPIQDAIEGITHSLCSLEFKDHRPLYEWV 249 N+RDP+IYR+ H H+ TG+ WCIYPMYDFAHPI+DAIE ITHS+C+LEF+DHRPLY+WV Sbjct: 202 NMRDPIIYRVAHMTHHNTGDKWCIYPMYDFAHPIEDAIEHITHSICTLEFEDHRPLYDWV 261 Query: 250 LEELGIEEAPRQREFGRVNLTGVVTGKRYLRALVAGNYVDGWDDXXXXXXXXXXXXXXXX 309 + E E PRQ EF ++ LT VVTGKRY++ LV VDGWDD Sbjct: 262 VRECEFEMPPRQIEFSKLYLTNVVTGKRYIKKLVEDGVVDGWDDPRLVSIAALRRRGFTP 321 Query: 310 ESIRSFVREIGMVRNQTMVDFSMLEHCLRQDLKASVPSIMAVLDPLKVVITNYEAGETEW 369 ESI+ F+ G+ ++Q+ VD++MLE+C+R+DLK P +MAVLDP+K+VI NY + E+ Sbjct: 322 ESIKMFIDMCGVSKSQSSVDYAMLEYCIREDLKLKKPRMMAVLDPIKLVIDNYPEDQVEY 381 Query: 370 LPLANNSENAELGVREVPFSGTVYIERDDFMEEPAPGFRRLVPGGEVRLKGAYIIKCNEV 429 L + NN EN ELG+R++PF +YI RDDFMEEP + RL PG EVRL AY + C Sbjct: 382 LDVINNLENEELGMRKIPFCRELYINRDDFMEEPPKKYFRLFPGNEVRLMQAYFVTCTGF 441 Query: 430 IKDAGTGAVRELRCTYDPLTKSGGANSGRKVKGTLHWVSASHGIPAEVYLYEKLLEDNEG 489 KD G + + CTYDP TKSG +GRKVKGT+HWV A + + AEV LYE L+++ +G Sbjct: 442 EKDED-GNITVVHCTYDPQTKSGSGFTGRKVKGTIHWVPAPYAVKAEVRLYENLIDEEKG 500 Query: 490 PKAEGETWEEYINPDSIRLMLSCLLEPFAAGAKPEDKFQFMRQGYFCVDNKLSREDRLVF 549 E + +NP+S+ ++ C +EP AK D FQF+RQGYFC+D K SRED LVF Sbjct: 501 VYNEDGSMN--LNPNSLTVLKDCYVEPNFEDAKAYDSFQFVRQGYFCIDAKDSREDALVF 558 Query: 550 NRIVPLKDTWKSGK 563 NRIV LK ++K K Sbjct: 559 NRIVSLKSSFKLPK 572 >A5Z4N9.1 A5Z4N9_9FIRM Putative uncharacterized protein Length = 557 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/556 (55%), Positives = 403/556 (72%), Gaps = 4/556 (0%) Query: 8 ETAAAENYMDKLIKEDIESGIYSREICTRFPPEPNGYLHIGSAFAIHTNYGLAHKYGGTF 67 E ++N+++ +I +D+E G + + TRFPPEPNGYLHIG A +I NYGLA KY G F Sbjct: 6 EKIESKNFIELIIDKDLEEGRFDH-VQTRFPPEPNGYLHIGHAKSILLNYGLAKKYNGKF 64 Query: 68 HLRFDDTNPLKEDMEYVKAIIQDIEWLGCSPGEHIYYGSDYSEQIYNSALNLIRKGKAYV 127 ++RFDDTNP KE E+V++I++DI+WLG + +++ S+Y EQ+Y +A+ LI+KGKAYV Sbjct: 65 NMRFDDTNPTKEKEEFVESILKDIKWLGADWEDRLFFASNYFEQMYEAAIKLIKKGKAYV 124 Query: 128 CDLSPEEVTAYRGTLTEPGKNSPYRERSVEENLRLFSGMREGAYPTGSRVLRAKIDMSSP 187 CDLSPEE+ YRGTLTEPGK+SPYR RSVEENL LF M++G Y G +VLRAKIDM+SP Sbjct: 125 CDLSPEEIREYRGTLTEPGKDSPYRNRSVEENLELFDNMKKGVYKDGEKVLRAKIDMTSP 184 Query: 188 NINLRDPVIYRIIHAEHYRTGNAWCIYPMYDFAHPIQDAIEGITHSLCSLEFKDHRPLYE 247 NIN+RDP+IYR+ H H++TG+ WCIYPMYDFAHPI+DAIEG+THS+C+LEF+DHRPLY+ Sbjct: 185 NINMRDPIIYRVAHMTHHKTGDKWCIYPMYDFAHPIEDAIEGVTHSICTLEFEDHRPLYD 244 Query: 248 WVLEELGIEEAPRQREFGRVNLTGVVTGKRYLRALVAGNYVDGWDDXXXXXXXXXXXXXX 307 WV+ EL PRQ EF ++ +T VVTGKRY++ LV VDGWDD Sbjct: 245 WVVRELEYPNPPRQIEFAKLYVTNVVTGKRYIKKLVEDGIVDGWDDPRLVSIAALRRRGF 304 Query: 308 XXESIRSFVREIGMVRNQTMVDFSMLEHCLRQDLKASVPSIMAVLDPLKVVITNYEAGET 367 ESI+ FV G+ ++Q+ VD++MLE+C+R+DLKA P +MAVLDP+KV+I NY + Sbjct: 305 TPESIKMFVDLCGISKSQSSVDYAMLEYCIREDLKAKKPRLMAVLDPIKVIIDNYPEDQV 364 Query: 368 EWLPLANNSENAELGVREVPFSGTVYIERDDFMEEPAPGFRRLVPGGEVRLKGAYIIKCN 427 EW + NN E ELG R+VPF +YI+R+DFMEEP + RL PG EVRL AY +KC Sbjct: 365 EWFDVVNNVECPELGTRKVPFCKEIYIDREDFMEEPPKKYFRLFPGNEVRLMNAYFVKCV 424 Query: 428 EVIKDAGTGAVRELRCTYDPLTKSGGANSGRKVKGTLHWVSASHGIPAEVYLYEKLLEDN 487 + KD G V E+ CTYDP T+SG +GRKVKGT+HWVSA HG+ +EV LYE ++++ Sbjct: 425 DYKKDEN-GNVTEIHCTYDPETRSGSGFTGRKVKGTIHWVSARHGVKSEVRLYENIVDEE 483 Query: 488 EGPKAEGETWEEYINPDSIRLMLSCLLEPFAAGAKPEDKFQFMRQGYFCVDNKLSREDRL 547 +G E T +NP+S+ ++ C +EP A KPEDKFQF+RQGYFC D K +++ Sbjct: 484 KGKLNEDGTLN--LNPNSLTVLKDCYVEPNIADVKPEDKFQFVRQGYFCADLKDYTKEKP 541 Query: 548 VFNRIVPLKDTWKSGK 563 VFNRIV LK ++K K Sbjct: 542 VFNRIVSLKSSFKLPK 557 >A6BKJ4.1 A6BKJ4_9FIRM Putative uncharacterized protein Length = 557 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/558 (56%), Positives = 406/558 (72%), Gaps = 7/558 (1%) Query: 8 ETAAAENYMDKLIKEDIESGIYSREICTRFPPEPNGYLHIGSAFAIHTNYGLAHKYGGTF 67 ET ++N++++ I +D+ G+YS E+CTRFPPEPNGYLHIG A +I N GLA KY GTF Sbjct: 4 ETTVSKNFIEQEIDKDLAEGVYS-EVCTRFPPEPNGYLHIGHAKSILLNSGLAKKYNGTF 62 Query: 68 HLRFDDTNPLKEDMEYVKAIIQDIEWLGCSPGEHIYYGSDYSEQIYNSALNLIRKGKAYV 127 HLRFDDTNP+KEDME+V++I +D++WLG G+H+Y+ S+Y +Q+Y A+ LI+KGKA+V Sbjct: 63 HLRFDDTNPMKEDMEFVESIKEDVKWLGADWGDHLYFASNYFDQMYECAVKLIKKGKAFV 122 Query: 128 CDLSPEEVTAYRGTLTEPGKNSPYRERSVEENLRLFSGMREGAYPTGSRVLRAKIDMSSP 187 CDL+ EE+ YRGTLTEPGKNSPYR+RSVEENLRLF M++G Y G +VLRAKIDM+SP Sbjct: 123 CDLTAEEMREYRGTLTEPGKNSPYRDRSVEENLRLFEEMKDGKYQDGEKVLRAKIDMASP 182 Query: 188 NINLRDPVIYRIIHAEHYRTGNAWCIYPMYDFAHPIQDAIEGITHSLCSLEFKDHRPLYE 247 NIN+RDP+IYR+ H H+ TG+ WCIYPMYDFAHPI+DAIE ITHS+C+LEF+DHRPLY+ Sbjct: 183 NINMRDPIIYRVAHMTHHNTGDKWCIYPMYDFAHPIEDAIEHITHSICTLEFEDHRPLYD 242 Query: 248 WVLEELGIEEAPRQREFGRVNLTGVVTGKRYLRALVAGNYVDGWDDXXXXXXXXXXXXXX 307 WV++E + APRQ EF ++ LT VVTGKRY++ LV VDGWDD Sbjct: 243 WVVKECEFDPAPRQIEFSKLYLTNVVTGKRYIKKLVMDGIVDGWDDPRLVSIAALRRRGF 302 Query: 308 XXESIRSFVREIGMVRNQTMVDFSMLEHCLRQDLKASVPSIMAVLDPLKVVITNYEAGET 367 ESI+ FV G+ ++Q+ VD++MLE+C+R+DLK P +MAVLDP+K+VI NY GE Sbjct: 303 TPESIKMFVEMCGVSKSQSSVDYAMLEYCIREDLKMKKPRMMAVLDPIKLVIDNYPEGEV 362 Query: 368 EWLPLANNSENAELGVREVPFSGTVYIERDDFMEEPAPGFRRLVPGGEVRLKGAYIIKCN 427 E+L + NN EN ELG+R+VPF +YIER+DFM EP + RL PG EVRL AY +KC Sbjct: 363 EYLDVENNLENPELGMRKVPFGRELYIERNDFMIEPPKKYFRLFPGNEVRLMHAYFVKCV 422 Query: 428 EVIKDAGTGAVRELRCTYDPLTKSGGANSGRKVKGTLHWVSASHGIPAEVYLYEKLLEDN 487 DA G V + CTYDP TK G +GRKVKGT+HWVSA AEV LYE L+++ Sbjct: 423 SYETDA-EGNVTVVHCTYDPETKCGTGFTGRKVKGTIHWVSAPQAKKAEVRLYENLIDEE 481 Query: 488 EG--PKAEGETWEEYINPDSIRLMLSCLLEPFAAGAKPEDKFQFMRQGYFCVDNKLSRED 545 +G K +G +NP+S++++ C +E A P D FQF+R GYFC+D+K S + Sbjct: 482 KGVYNKEDGSL---NLNPNSLQILKECYVEDSFNEAGPCDSFQFVRNGYFCIDSKDSTPE 538 Query: 546 RLVFNRIVPLKDTWKSGK 563 LVFNRIV LK ++K K Sbjct: 539 NLVFNRIVSLKSSFKLPK 556 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,612,054,556 Number of extensions: 161986177 Number of successful extensions: 301260 Number of sequences better than 1.0e-05: 2744 Number of HSP's gapped: 295194 Number of HSP's successfully gapped: 2752 Length of query: 563 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 422 Effective length of database: 1,732,333,088 Effective search space: 731044563136 Effective search space used: 731044563136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)