BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0005.p (518 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KH71.1 B3KH71_9BACI Tetratricopeptide TPR_2 repeat protein 684 0.0 B1DCC4.1 B1DCC4_9BACL Tetratricopeptide TPR_2 repeat protein 609 e-172 A6LWS8.1 A6LWS8_CLOB8 TPR repeat-containing protein 255 1e-65 A9KGF7.1 A9KGF7_COXBN Hypothetical membrane associated protein 225 7e-57 A9KE98.2 A9KE98_COXBN Tetratricopeptide repeat family protein 218 2e-54 >B3KH71.1 B3KH71_9BACI Tetratricopeptide TPR_2 repeat protein Length = 516 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/500 (64%), Positives = 390/500 (78%) Query: 1 MTDSGPIRYRFSEAPIWELQRKYYEELGMQAWKNDQVPQYITSNPMIGTSYAEMIFGFLQ 60 MTD+ R+RFSEAPIWELQR YYEELGM+AW NDQVPQYITSNPMI T+YAEM+FGFL+ Sbjct: 1 MTDNNQQRFRFSEAPIWELQRTYYEELGMKAWNNDQVPQYITSNPMIATAYAEMVFGFLR 60 Query: 61 DRAGMGHTTEPVIILELGAGAGRLAFHVLQKLCELVDYAGLPLPPFTYVMSDLPWKNITG 120 DRAG G EPV ILELGAGAGRL +HVL KLCEL D +G+ LPPF YVM+DLP KN+T Sbjct: 61 DRAGRGDIIEPVTILELGAGAGRLGYHVLHKLCELRDDSGIALPPFRYVMTDLPMKNVTA 120 Query: 121 WQQHPGLIPFVEQGILDFARFDAVADTELHLIESGRVITPGMLAQPLMVIANYFFDSIPQ 180 WQQHP + ++EQG+LDF RFDAV DTEL+L+ S I PG L QPL+++ANYFFD IPQ Sbjct: 121 WQQHPAMQSYIEQGLLDFGRFDAVHDTELNLVVSKTTIRPGDLKQPLLIVANYFFDGIPQ 180 Query: 181 ELLYVDEGKIYECEVSLQYPEQSDTMGPSEVLRDLIPEYHYRRAAGYEEKFYPYREVIAF 240 EL+YV EGKIYE +V +++PEQ + P+E L + Y +RRA YEE+ YPYR+VIA Sbjct: 181 ELIYVGEGKIYESDVVIEFPEQHHKLKPAEALERMKLAYEHRRAPRYEEETYPYRDVIAH 240 Query: 241 YQEKLEDSHVLFPAAALECMERXXXXXXXXXXXXTADKGDHRLENWEFAEPPKLIHHGSI 300 YQ++LEDSH+LFP L C+ER TADKGDHR++NW+FAEPP+LI+HGS Sbjct: 241 YQQELEDSHILFPEVGLTCLERLNRLSTSGFMLLTADKGDHRIDNWKFAEPPQLIYHGSF 300 Query: 301 SLTANYHALVCYFEQKGALASFTEHHYKNLNVGCIFMLEEPLRHVQARLAYRRFIERFGP 360 SLTANYHAL FEQ+GALA F HYKN+NVGCI MLE P + RLAYR+FIERFGP Sbjct: 301 SLTANYHALQHVFEQRGALAMFPTQHYKNINVGCILMLEAPASYANTRLAYRQFIERFGP 360 Query: 361 DDFFSLKLWIDQNYDTIGLQQILGFWRLGGYDAELFIQSAERISGLLEDASDEEILDLKL 420 D+FFS+K W+D+N +++GLQQIL FWRLGGYDAE FIQSA+RIS LL +A+DEE+LD++ Sbjct: 361 DEFFSMKEWVDRNIESMGLQQILSFWRLGGYDAEFFIQSAKRISNLLPEANDEEMLDIRA 420 Query: 421 GIDRMWTGFYPMPQKYDLALDSGLLLFEMGLYEDSRRFLTQSLRETEDEPVVTVLYCLAI 480 GI +MW+ +Y M Q+YDLALD+GL+LFEM +YE+++ FL +S+ EDEPV TVLYCLAI Sbjct: 421 GIFKMWSSYYVMEQRYDLALDAGLVLFEMDMYEEAKFFLKESVDTDEDEPVPTVLYCLAI 480 Query: 481 CSYXXXXXXXXXXYTRQALV 500 C Y YTR+ALV Sbjct: 481 CCYELGLDEEALEYTREALV 500 >B1DCC4.1 B1DCC4_9BACL Tetratricopeptide TPR_2 repeat protein Length = 518 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 290/483 (60%), Positives = 363/483 (75%) Query: 1 MTDSGPIRYRFSEAPIWELQRKYYEELGMQAWKNDQVPQYITSNPMIGTSYAEMIFGFLQ 60 MT S RYRFSEAPIW++ R+YYEE G++AW NDQVPQYITSNPMI +YAEM+FGFLQ Sbjct: 1 MTISNTQRYRFSEAPIWQINRQYYEEEGLRAWNNDQVPQYITSNPMIAAAYAEMLFGFLQ 60 Query: 61 DRAGMGHTTEPVIILELGAGAGRLAFHVLQKLCELVDYAGLPLPPFTYVMSDLPWKNITG 120 DRA G EPV I+ELGAGAGR AFHVL +L L+D+AG+ +PPF Y+M+DL N+ Sbjct: 61 DRANQGQCHEPVQIVELGAGAGRFAFHVLHELSRLIDFAGIAVPPFRYIMTDLAANNVEA 120 Query: 121 WQQHPGLIPFVEQGILDFARFDAVADTELHLIESGRVITPGMLAQPLMVIANYFFDSIPQ 180 WQ+HP L F+E+G+LDFARFDAV D+EL L SG I G L QPL+++ANYFFDSIPQ Sbjct: 121 WQKHPALQTFIERGMLDFARFDAVQDSELLLAASGETIRRGDLKQPLVIVANYFFDSIPQ 180 Query: 181 ELLYVDEGKIYECEVSLQYPEQSDTMGPSEVLRDLIPEYHYRRAAGYEEKFYPYREVIAF 240 ELLY+ EG+++E +V ++YPE D++ PSE+L + Y RRA YE+ YPYR+VIA Sbjct: 181 ELLYIGEGRVFEADVLVKYPENKDSLKPSELLSQIALSYELRRAPQYEDASYPYRDVIAV 240 Query: 241 YQEKLEDSHVLFPAAALECMERXXXXXXXXXXXXTADKGDHRLENWEFAEPPKLIHHGSI 300 YQE+LEDSH+LFP A+L C++R TADKGDH LE+W FAEPP+L+ HGS Sbjct: 241 YQEQLEDSHILFPEASLACLDRLNQLSQAGIVLLTADKGDHLLEHWRFAEPPELVFHGSF 300 Query: 301 SLTANYHALVCYFEQKGALASFTEHHYKNLNVGCIFMLEEPLRHVQARLAYRRFIERFGP 360 SLTANYHA+ E+ GAL F HHY N+N+GC+ + P + Q RLAYRR +ERFGP Sbjct: 301 SLTANYHAMGEVLERSGALVMFPSHHYDNINIGCMISVNSPQDYYQTRLAYRRCVERFGP 360 Query: 361 DDFFSLKLWIDQNYDTIGLQQILGFWRLGGYDAELFIQSAERISGLLEDASDEEILDLKL 420 DDF+SLK WID+ + +GL+QIL FWRLGGYDAE FIQS ++IS LL DA DEE D+ L Sbjct: 361 DDFYSLKWWIDRYIEDMGLRQILSFWRLGGYDAEFFIQSTKQISSLLPDALDEEKEDILL 420 Query: 421 GIDRMWTGFYPMPQKYDLALDSGLLLFEMGLYEDSRRFLTQSLRETEDEPVVTVLYCLAI 480 GI+RMW+ +Y M QKYDLAL++GL+LFEM +Y +S+RFL S+ E E+E V TV YCLAI Sbjct: 421 GIERMWSSYYVMEQKYDLALEAGLVLFEMDMYGESKRFLEISVEEDEEEIVSTVFYCLAI 480 Query: 481 CSY 483 C + Sbjct: 481 CCF 483 >A6LWS8.1 A6LWS8_CLOB8 TPR repeat-containing protein Length = 544 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/497 (30%), Positives = 249/497 (50%), Gaps = 15/497 (3%) Query: 11 FSEAPIWELQRKYYEELGMQAWKNDQVPQYITSNPMIGTSYAEMIFGFLQDRAGMGHTTE 70 S++ +W+LQ +++ G +AW VPQYIT+NP I YA+ +FG+L+D + Sbjct: 32 LSQSMLWKLQTEFFANQGPEAWIKGIVPQYITTNPYIANQYAKTVFGYLRDYVAREDVDK 91 Query: 71 PVII--LELGAGAGRLAFHVLQKLCELVDYAGLPLPPFTYVMSDLPWKNITGWQQHPGLI 128 +I +EL AG GR + L++ +++ + L F Y+++D +NI WQ H L Sbjct: 92 NTVIYIMELAAGVGRFTYTFLKRFLHMIENSSLKDIKFKYIVTDFAERNIEYWQNHSFLS 151 Query: 129 PFVEQGILDFARFDAVADTELHLIESGRVITPGMLAQPLMVIANYFFDSIPQELLYVDEG 188 P+ E GILD A FD D E+ L SG V++ G + PL++ ANY FDS+PQ+ YV+ G Sbjct: 152 PYFEAGILDCATFDISKDDEIKLRHSGEVLSQGKMKNPLILFANYTFDSLPQDTFYVNNG 211 Query: 189 KIYECEVSLQYPEQSDTMGPSEVLRDLIPEYHYRRAAG---YEEKFYPYREVIAFYQEKL 245 +IYE +++ P++ +L L Y ++ G YE+K +V+ Y+ L Sbjct: 212 EIYEGVITITSPDEKGDPNDKSILAGLDYYYTDKKIDGNSYYEDK--NLNDVLMHYKNSL 269 Query: 246 EDSHVLFPAAALECMERXXXXXXXXXXXXTADKGDHRLENWEFAEPPKLIHHGSISLTAN 305 ED+ P L C+ R +ADKG E+ + P L HG IS+T N Sbjct: 270 EDTAFYMPIIGLRCISRLRKLFNDDVILISADKGYKNEESMDKNYHPFLSKHGCISMTVN 329 Query: 306 YHALVCYFEQKGALASFTEHHYKNLNVGCIFMLEEPLRHVQARLAYRRFIERFGPDDFFS 365 +HA+ YF+ G + + ++N+NV ++ +AY IE GPDDF+ Sbjct: 330 FHAIELYFKALGGKTIHSIYEHENINVSLFMASNSDNDFIETSMAYNEIIESVGPDDFYI 389 Query: 366 LKLWIDQNYDTIGLQQILGFWRLGGYDAELFIQSAERISGLLEDASDEEIL---DLKLGI 422 +K I ++ +++L F R +D+ + E + L+E +EE +L I Sbjct: 390 MKKAIMPLSSSLTTKELLAFLRFTVWDSRTLL---ELYNILIERIENEENFPKDELADAI 446 Query: 423 DRMWTGFYPMPQKYDLALDSGLLLFEMGLYEDSRRFLTQSLRETEDEPVVTVLYCLAICS 482 +++W ++P+ ++ DL G +L +G D+ + L SL + P Y +A+C Sbjct: 447 NKVWEYYFPIGEEGDLGYYFGSILGYLGYDNDALKLLESSLEFYGECPETN--YEIALCY 504 Query: 483 YXXXXXXXXXXYTRQAL 499 Y YT +++ Sbjct: 505 YNLQQLDKALEYTEKSI 521 >A9KGF7.1 A9KGF7_COXBN Hypothetical membrane associated protein Length = 517 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 144/483 (29%), Positives = 231/483 (47%), Gaps = 24/483 (4%) Query: 8 RYRFSEAPIWELQRKYYEELGMQAWKNDQVPQYITSNPMIGTSYAEMIFGFLQD--RAGM 65 + R S++ +W+ QR+YY E G QA+ N QVP Y+T NP I YAE+IF F++D + Sbjct: 12 KTRMSQSLLWDFQRQYYYEQGPQAFAN-QVPFYVTCNPFIANVYAELIFSFIRDWIKQHP 70 Query: 66 GHTTEPVIILELGAGAGRLAFHVLQKLCELVDYAGLPLPPFTYVMSDLPWKNITGWQQHP 125 P +LELGAG+GR +F+ +++LCEL+D AG+ YVMSD ++ W HP Sbjct: 71 QSVQSPFYVLELGAGSGRFSFYTIKRLCELLDEAGMKSIALKYVMSDFSRNSLDFWLNHP 130 Query: 126 GLIPFVEQGILDFARFDAVADTELHLIESGRVITPGMLAQPLMVIANYFFDSIPQELLYV 185 L P+V++G+LDF FD D ++ L R L PL+VIANY FD+I Q+ YV Sbjct: 131 ALTPYVQRGVLDFVLFDIEKDKDIPL----RKDNSDPLTNPLVVIANYIFDTIMQDCFYV 186 Query: 186 DEGKIYECEVSLQYPEQSDTMGPSEVLRDLIPEYHYRRAAGYEEKFYPYREVIAFYQEKL 245 + +++E +++ + + G + + Y R V+ Y+E + Sbjct: 187 ENKQLHESLLTVTTRKSNTQDGRVLDMEKVNVNYTNHRIGDNYYNNADIDGVLMSYKEII 246 Query: 246 EDSHVLFPAAALECMERXXXXXXXXXXXXTADKGDHRLENWEFAEPPKLIHHGSISLTAN 305 FP AL+ +++ +ADK ++ + P+ + HGS S+T N Sbjct: 247 NKRPFTFPVFALQLLQKLMALSQNRIFLISADKSYCTVDELMTSNYPQFVFHGSFSMTVN 306 Query: 306 YHALVCYFEQKGALASFTEHHYKNLNVGCIFMLEEPLRHVQARLAYRRFIERFGPDDFFS 365 HA+ +FE+ G +F + K + + + R A IE F D+F+ Sbjct: 307 MHAIALFFERLGG-GAFFQSPRKGIKTSVCYSGFSLNEMPETRRALAEHIEGFSAADYFT 365 Query: 366 LKLWIDQNYDTIGLQQILGFWRLGGYDAELFIQSAERISGLLEDASDEEILDLKLGIDRM 425 ++ I + D + +Q +L L +D LF + I L+ A L+L I+++ Sbjct: 366 MQFQIGEVCDRLSVQTLLSCVNLSRWDPHLFKKLYRAIHDKLKTADQTTADYLRLNIEKI 425 Query: 426 WTGFYPMPQKYDLALDSGLLLFEMGL-------YEDSRRFLTQSLRETEDEPVVTVLYCL 478 FY +P +D D L + + YE S+RF + E V Y L Sbjct: 426 ANNFYFLPNAHDTLFDIALFFHSLRIWPRAIHYYEQSQRFFGE-----RHESV----YNL 476 Query: 479 AIC 481 A+C Sbjct: 477 ALC 479 >A9KE98.2 A9KE98_COXBN Tetratricopeptide repeat family protein Length = 519 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/496 (29%), Positives = 240/496 (48%), Gaps = 14/496 (2%) Query: 10 RFSEAPIWELQRKYYEELGMQAWKNDQVPQYITSNPMIGTSYAEMIFGFLQDRAGMGHTT 69 R S++ +W QR +Y++ G +AW D VP YITSNP I YA+++ F+QD + + Sbjct: 12 RLSQSQLWTGQRAFYDQKGAEAWAGD-VPFYITSNPFIANCYAKLVIRFIQDWINLHPES 70 Query: 70 --EPVIILELGAGAGRLAFHVLQKLCELVDYAGLPLPPFTYVMSDLPWKNITGWQQHPGL 127 EP +LELGAG+G+ +F VL++L L L YVMSD N++ WQ L Sbjct: 71 RYEPFYVLELGAGSGQFSFFVLKQLNSLQTQLNLSHLNIKYVMSDFTENNVSFWQNQKML 130 Query: 128 IPFVEQGILDFARFDAVADTELHLIESGRVITPGMLAQPLMVIANYFFDSIPQELLYVDE 187 + F+E+ LDFA +D D + LIESG + L+ PL+V ANY FDSI ++ + Sbjct: 131 LSFLEKKQLDFAIYDLENDQSITLIESGTELRSNSLSNPLIVFANYIFDSIKADVFAIKN 190 Query: 188 GKIYECEVSLQYPEQSDTMGPSEVLRDLIPEYHYRRAAGYEEKFYP---YREVIAFYQEK 244 KI E V+L+ +Q + +++ I R Y+ +Y + +++ Y+++ Sbjct: 191 KKIKESLVTLK-SKQKTSFSNAKINWKKIQIKFTERPIPYD--YYSNKIFDDILNQYKDQ 247 Query: 245 LEDSHVLFPAAALECMERXXXXXXXXXXXXTADKGDHRLENWEFAEPPKLIHHGSISLTA 304 L+++ +LFP+ AL+C++ ++DKG + +E + + P+L HGS SL Sbjct: 248 LKNTQLLFPSGALKCLQNLIQISCGKLLLVSSDKGFNTIEELDELDYPELDFHGSFSLMV 307 Query: 305 NYHALVCYFEQKGALASFTEHHYKNLNVGCIFMLE-EPLRHVQARLAYRRFIERFGPDDF 363 NYHA+ YF+ + A +V C + E L Q L IE F P D+ Sbjct: 308 NYHAIGEYFKHENGEAFIQTPREGLASVVCAAGFQFETLAETQNFLIDS--IEGFSPSDY 365 Query: 364 FSLKLWIDQNYDTIGLQQILGFWRLGGYDAELFIQSAERISGLLEDASDEEILDLKLGID 423 F+ + + +L F +D LF Q + + L A ++ I LK + Sbjct: 366 FNFYEHFSKTATKASFEMLLSFLCFSQWDPLLFYQIHDELMKRLNKADEQMISYLKKNLP 425 Query: 424 RMWTGFYPMPQKYDLALDSGLLLFEMGLYEDSRRFLTQSLRETEDEPVVTVLYCLAICSY 483 + FY +P D+ G+L +E+ Y+ + + +S E P Y + +C + Sbjct: 426 LIANNFYYVPGCDDIFFAVGMLYYELDEYQKAIHYYLES--EKHFGPSFESTYNMGLCHF 483 Query: 484 XXXXXXXXXXYTRQAL 499 Y +AL Sbjct: 484 YAKRYKSAINYFEKAL 499 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,075,722,612 Number of extensions: 132132973 Number of successful extensions: 270059 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 269999 Number of HSP's successfully gapped: 26 Length of query: 518 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 378 Effective length of database: 1,741,754,103 Effective search space: 658383050934 Effective search space used: 658383050934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)