BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0003.p (399 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3IBX7.1 A3IBX7_9BACI Oxalate decarboxylase 674 0.0 B3KJT3.1 B3KJT3_9BACI Bicupin, oxalate decarboxylase family EC=4... 674 0.0 C2PSC0.1 C2PSC0_BACCE Oxalate decarboxylase oxdD 653 0.0 C0Z5C9.1 C0Z5C9_BREBN Probable oxalate decarboxylase 652 0.0 B7HG00.1 B7HG00_BACC4 Oxalate decarboxylase OxdD EC=4.1.1.2 650 0.0 >A3IBX7.1 A3IBX7_9BACI Oxalate decarboxylase Length = 391 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/379 (83%), Positives = 344/379 (90%) Query: 14 IPQPIRSDGAGNVDLGPRDVMRDWENPDMFIPPVTDNGLIPNLKFSFSDAHMQLNHGGWS 73 +PQP+RSDGAG +D GPRD+MRD ENPDM +PP TD GLIPNL+FSFSD HM LN GGWS Sbjct: 8 VPQPMRSDGAGGIDKGPRDIMRDLENPDMLVPPTTDAGLIPNLRFSFSDTHMTLNQGGWS 67 Query: 74 REVTVRELPVATTLAAVNMSLTPGGVRELHWHQQAEWSYMLLGSARITAVDQNGRNFIAD 133 RE+TVRELP+ATT+A VNMSLTPGGVRELHWHQQAEWSYMLLG ARITAVDQNG NFIAD Sbjct: 68 REITVRELPIATTMAGVNMSLTPGGVRELHWHQQAEWSYMLLGHARITAVDQNGCNFIAD 127 Query: 134 IGPGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGTFSDLNTLSLSDWFAHTPKEVLSANFG 193 +GPGDLWYFPPGIPHSIQGLA GCEFLLVFDDG FSDLNTLS+SDWFAHTPKEVLSANFG Sbjct: 128 VGPGDLWYFPPGIPHSIQGLAGGCEFLLVFDDGNFSDLNTLSISDWFAHTPKEVLSANFG 187 Query: 194 VPPSAFDYLPKEQVYIYQDQVPGSLQSQKVQSPFGEIPLSFKHRLLAQPPLKTPGGSVRI 253 VP SAFD +P EQVYIYQD VP S+ SQK+QSP+G++P +FKHRLLAQ PLKTPGGSVRI Sbjct: 188 VPISAFDDIPSEQVYIYQDNVPRSIDSQKIQSPYGKVPQTFKHRLLAQSPLKTPGGSVRI 247 Query: 254 VDSSNFPVSRTIAAALVEIEPGAMRELHWHPNNDEWQYYLAGEGRMTVFGGNGAARTFNY 313 VDS+NFP+S+ IAAALVEIEPGAMRELHWHPNNDEWQYYL G+GRMTVF G+G ARTF+Y Sbjct: 248 VDSTNFPISKNIAAALVEIEPGAMRELHWHPNNDEWQYYLQGKGRMTVFTGDGTARTFDY 307 Query: 314 RAGDVGYVPFAFGHYIQNTGKETLWFLEMFKSDRFADVSLNQWMALTPEELVSSNLNVGP 373 RAGDVGYVPFA GHYI+NTG E LWFLEMFKSDRF DVSLNQWMALTP ELV SNL+VGP Sbjct: 308 RAGDVGYVPFATGHYIENTGTEPLWFLEMFKSDRFQDVSLNQWMALTPIELVQSNLHVGP 367 Query: 374 ELIDALRKIKWPVVTYPGY 392 ELI ALRK KWPVV YPG+ Sbjct: 368 ELIQALRKEKWPVVKYPGF 386 >B3KJT3.1 B3KJT3_9BACI Bicupin, oxalate decarboxylase family EC=4.1.1.2 Length = 398 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/392 (80%), Positives = 348/392 (88%) Query: 1 MESPEHGSAKKAGIPQPIRSDGAGNVDLGPRDVMRDWENPDMFIPPVTDNGLIPNLKFSF 60 ME IPQPIRSDGAG D GPRDVMRD ENPDM +PPVTD GL+PNLK SF Sbjct: 2 MEDQNQKRENAGRIPQPIRSDGAGGPDYGPRDVMRDIENPDMLVPPVTDAGLMPNLKMSF 61 Query: 61 SDAHMQLNHGGWSREVTVRELPVATTLAAVNMSLTPGGVRELHWHQQAEWSYMLLGSARI 120 SD HMQLNHGGWSRE+TVR+LP+ATTLA VNMSLTPGGVRELHWHQQAEW+YM+ G ARI Sbjct: 62 SDTHMQLNHGGWSREITVRDLPIATTLAGVNMSLTPGGVRELHWHQQAEWAYMIWGIARI 121 Query: 121 TAVDQNGRNFIADIGPGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGTFSDLNTLSLSDWF 180 TA+D +GRNFIAD+GPGDLWYFP G+PHSIQGL EGCEFLLVFDDG FSDLNTLS+SDWF Sbjct: 122 TAMDASGRNFIADVGPGDLWYFPAGLPHSIQGLEEGCEFLLVFDDGHFSDLNTLSISDWF 181 Query: 181 AHTPKEVLSANFGVPPSAFDYLPKEQVYIYQDQVPGSLQSQKVQSPFGEIPLSFKHRLLA 240 AHTPK+VLSANFGVP +AFD++PKEQVYI+QDQVPGSL SQ+VQSP+G +PLSFKHRLLA Sbjct: 182 AHTPKDVLSANFGVPENAFDHIPKEQVYIFQDQVPGSLASQEVQSPYGTVPLSFKHRLLA 241 Query: 241 QPPLKTPGGSVRIVDSSNFPVSRTIAAALVEIEPGAMRELHWHPNNDEWQYYLAGEGRMT 300 Q P+ TPGGSVRIVDS NFP+S+T+AAALVEI+PGAMRELHWHPN DEWQYYL G+GRMT Sbjct: 242 QEPIITPGGSVRIVDSRNFPISKTVAAALVEIKPGAMRELHWHPNQDEWQYYLTGQGRMT 301 Query: 301 VFGGNGAARTFNYRAGDVGYVPFAFGHYIQNTGKETLWFLEMFKSDRFADVSLNQWMALT 360 VF GNGAARTF+YRAGDVGYVPFAFGHYIQNTG E+LWFLEMF+SDRF D+SLNQWMALT Sbjct: 302 VFAGNGAARTFDYRAGDVGYVPFAFGHYIQNTGTESLWFLEMFRSDRFEDISLNQWMALT 361 Query: 361 PEELVSSNLNVGPELIDALRKIKWPVVTYPGY 392 P +LV NLNVG E+ DALRK KWPVV YPG+ Sbjct: 362 PRDLVRDNLNVGNEVTDALRKEKWPVVKYPGF 393 >C2PSC0.1 C2PSC0_BACCE Oxalate decarboxylase oxdD Length = 399 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/379 (80%), Positives = 343/379 (90%), Gaps = 1/379 (0%) Query: 14 IPQPIRSDGAGNVDLGPRDVMRDWENPDMFIPPVTDNGLIPNLKFSFSDAHMQLNHGGWS 73 IPQPIRSDGAG +D GPR+VMRD +NP+M +PP+TD GL+PNLKFSFSD M L HGGWS Sbjct: 14 IPQPIRSDGAGAIDSGPRNVMRDIQNPNMLVPPITDAGLVPNLKFSFSDTSMILKHGGWS 73 Query: 74 REVTVRELPVATTLAAVNMSLTPGGVRELHWHQQAEWSYMLLGSARITAVDQNGRNFIAD 133 RE+TVRELPV+TT+A VNMSLT GGVRELHWH+QAEW+YMLLG ARITAVDQNGRNFIAD Sbjct: 74 REITVRELPVSTTIAGVNMSLTAGGVRELHWHKQAEWAYMLLGKARITAVDQNGRNFIAD 133 Query: 134 IGPGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGTFSDLNTLSLSDWFAHTPKEVLSANFG 193 +GPGDLWYFPPGIPHSIQGL E CEFLLVFDDG FSDL+TL++SDWFAHTPKEVLSANFG Sbjct: 134 VGPGDLWYFPPGIPHSIQGL-EHCEFLLVFDDGHFSDLSTLAISDWFAHTPKEVLSANFG 192 Query: 194 VPPSAFDYLPKEQVYIYQDQVPGSLQSQKVQSPFGEIPLSFKHRLLAQPPLKTPGGSVRI 253 VP SAF +P +QVYIYQ +VPGSL+SQ+VQSP GE+PL+FKH LL Q P+KTPGGSVRI Sbjct: 193 VPESAFRSIPSDQVYIYQGEVPGSLESQEVQSPEGEVPLTFKHELLKQKPIKTPGGSVRI 252 Query: 254 VDSSNFPVSRTIAAALVEIEPGAMRELHWHPNNDEWQYYLAGEGRMTVFGGNGAARTFNY 313 VDS+NFP+S+ IAAALVE+EPG MRELHWHPNNDEWQYYL G+ RMTVF GNG ARTF+Y Sbjct: 253 VDSTNFPISKAIAAALVEVEPGGMRELHWHPNNDEWQYYLTGQARMTVFLGNGTARTFDY 312 Query: 314 RAGDVGYVPFAFGHYIQNTGKETLWFLEMFKSDRFADVSLNQWMALTPEELVSSNLNVGP 373 RAGDVGYVPFA GHYIQNTG ETLWFLEMFKS+RF DVSLNQWMALTP+E+V SN++VGP Sbjct: 313 RAGDVGYVPFATGHYIQNTGNETLWFLEMFKSNRFEDVSLNQWMALTPKEIVESNVHVGP 372 Query: 374 ELIDALRKIKWPVVTYPGY 392 +L+D+LRK KWPVV YPG+ Sbjct: 373 QLMDSLRKEKWPVVKYPGF 391 >C0Z5C9.1 C0Z5C9_BREBN Probable oxalate decarboxylase Length = 392 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/393 (78%), Positives = 344/393 (87%), Gaps = 4/393 (1%) Query: 1 MESPEHGSAKKAGIPQPIRSDGAGNVDLGPRDVMRDWENPDMFIPPVTDNGLIPNLKFSF 60 M P+ G+ IPQP+R DG G VDLGPR++MRD +NP+M +PPVTD GL+PNLKFSF Sbjct: 1 MNPPDKGNQ----IPQPMRRDGTGWVDLGPRNIMRDRQNPNMLVPPVTDAGLLPNLKFSF 56 Query: 61 SDAHMQLNHGGWSREVTVRELPVATTLAAVNMSLTPGGVRELHWHQQAEWSYMLLGSARI 120 SDA M LNHGGWSREVT+RELP+ATTLA VNMSLTPGGVRELHWHQQAEW+YMLLG ARI Sbjct: 57 SDAFMTLNHGGWSREVTIRELPIATTLAGVNMSLTPGGVRELHWHQQAEWAYMLLGRARI 116 Query: 121 TAVDQNGRNFIADIGPGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGTFSDLNTLSLSDWF 180 T+VDQ GRNFIADIG GDLWYFPPGIPHSIQGL EGCEFLLVFDDG FSDLNTLS+SDWF Sbjct: 117 TSVDQRGRNFIADIGKGDLWYFPPGIPHSIQGLEEGCEFLLVFDDGHFSDLNTLSISDWF 176 Query: 181 AHTPKEVLSANFGVPPSAFDYLPKEQVYIYQDQVPGSLQSQKVQSPFGEIPLSFKHRLLA 240 AHTP +VLSANFGVP SAF +P EQVYIYQD+VPGS++ +V+SP+G +PL F HRLLA Sbjct: 177 AHTPTDVLSANFGVPESAFADIPCEQVYIYQDEVPGSIEGDEVESPYGTVPLPFTHRLLA 236 Query: 241 QPPLKTPGGSVRIVDSSNFPVSRTIAAALVEIEPGAMRELHWHPNNDEWQYYLAGEGRMT 300 Q PL TPGGSVRIVDS NFP+S+ IAAALVE+ PG MRELHWHPNNDEWQYY++G+ RMT Sbjct: 237 QRPLITPGGSVRIVDSRNFPISKAIAAALVELRPGGMRELHWHPNNDEWQYYISGQARMT 296 Query: 301 VFGGNGAARTFNYRAGDVGYVPFAFGHYIQNTGKETLWFLEMFKSDRFADVSLNQWMALT 360 VF GNG ARTF+Y+AGDVGYVPFA GHYIQNTG ET+WFLEMFKSDRF DVSLNQWMALT Sbjct: 297 VFTGNGNARTFDYQAGDVGYVPFATGHYIQNTGTETVWFLEMFKSDRFVDVSLNQWMALT 356 Query: 361 PEELVSSNLNVGPELIDALRKIKWPVVTYPGYG 393 P ELV+SNL VGPE +DALRK KWPVV YPGYG Sbjct: 357 PHELVASNLCVGPEFLDALRKDKWPVVKYPGYG 389 >B7HG00.1 B7HG00_BACC4 Oxalate decarboxylase OxdD EC=4.1.1.2 Length = 398 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/379 (79%), Positives = 343/379 (90%), Gaps = 1/379 (0%) Query: 14 IPQPIRSDGAGNVDLGPRDVMRDWENPDMFIPPVTDNGLIPNLKFSFSDAHMQLNHGGWS 73 +PQPIRSDGAG +D GPR+VMRD +NP+M +PP+TD GL+PNLKFSFSD M L GGWS Sbjct: 13 VPQPIRSDGAGAIDSGPRNVMRDIQNPNMLVPPITDAGLVPNLKFSFSDTSMILKQGGWS 72 Query: 74 REVTVRELPVATTLAAVNMSLTPGGVRELHWHQQAEWSYMLLGSARITAVDQNGRNFIAD 133 RE+TVRELPV+TT+A VNMSLT GGVRELHWH++AEW+YMLLG ARITAVDQNGRNFIAD Sbjct: 73 REITVRELPVSTTIAGVNMSLTAGGVRELHWHKEAEWAYMLLGRARITAVDQNGRNFIAD 132 Query: 134 IGPGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGTFSDLNTLSLSDWFAHTPKEVLSANFG 193 +GPGDLWYFPPGIPHSIQGL E CEFLLVFDDG FSDL+TL++SDWFAHTPKEVLSANFG Sbjct: 133 VGPGDLWYFPPGIPHSIQGL-EHCEFLLVFDDGHFSDLSTLAISDWFAHTPKEVLSANFG 191 Query: 194 VPPSAFDYLPKEQVYIYQDQVPGSLQSQKVQSPFGEIPLSFKHRLLAQPPLKTPGGSVRI 253 VP SAF +P +QVYIYQ +VPGSL+SQ+VQSP GE+PL+FKH LL Q P+KTPGGSVRI Sbjct: 192 VPESAFRSIPSDQVYIYQGEVPGSLESQEVQSPKGEVPLTFKHELLKQKPIKTPGGSVRI 251 Query: 254 VDSSNFPVSRTIAAALVEIEPGAMRELHWHPNNDEWQYYLAGEGRMTVFGGNGAARTFNY 313 VDS+NFP+S+TIAAALVE+EPG MRELHWHPNNDEWQYYL GE RMTVF GNG ARTF+Y Sbjct: 252 VDSTNFPISKTIAAALVEVEPGGMRELHWHPNNDEWQYYLTGEARMTVFLGNGTARTFDY 311 Query: 314 RAGDVGYVPFAFGHYIQNTGKETLWFLEMFKSDRFADVSLNQWMALTPEELVSSNLNVGP 373 RAGDVGYVPFA GHYIQNTG ETLWFLEMF+S+RF DVSLNQWMALTP+E+V SN++VGP Sbjct: 312 RAGDVGYVPFATGHYIQNTGTETLWFLEMFRSNRFEDVSLNQWMALTPKEIVESNIHVGP 371 Query: 374 ELIDALRKIKWPVVTYPGY 392 +++D+LRK KWPVV YPG+ Sbjct: 372 QVMDSLRKEKWPVVKYPGF 390 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,779,880,654 Number of extensions: 125869240 Number of successful extensions: 245636 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 244626 Number of HSP's successfully gapped: 269 Length of query: 399 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 261 Effective length of database: 1,760,596,133 Effective search space: 459515590713 Effective search space used: 459515590713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)