BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0001.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCS4.1 B1DCS4_9BACL Luciferase family protein 479 e-133 B3KBS2.1 B3KBS2_9BACI Luciferase family protein 472 e-131 B3K8C3.1 B3K8C3_9BACI Luciferase family protein 461 e-128 C0ZIR1.1 C0ZIR1_BREBN Putative uncharacterized protein 458 e-127 B4AIF1.1 B4AIF1_BACPU Oxidoreductase 454 e-126 >B1DCS4.1 B1DCS4_9BACL Luciferase family protein Length = 354 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/354 (65%), Positives = 272/354 (76%), Gaps = 1/354 (0%) Query: 1 MSEMENSMEIGISTFLETTPDPVTGEVISHAERLREAVEEIVLADQVGLDVYGIGEHHRI 60 M+E E+GISTFLE P P G SHAER+R +VEE++LADQVGLDVYGIGEHHR Sbjct: 1 MTESATHFELGISTFLEAKPHPGMGGAYSHAERIRNSVEEMILADQVGLDVYGIGEHHRQ 60 Query: 61 DYXXXXXXXXXXXXXXMTKNIRLTSAVTVLSSDDPVRVYQAFSTLDGLSGGRAEIMAGRG 120 DY TK++RLTSAVTVLSSDDPVRVYQ FST+D +S GRAEIMAGRG Sbjct: 61 DYAASAPHVILAAAAAQTKHLRLTSAVTVLSSDDPVRVYQGFSTVDAISNGRAEIMAGRG 120 Query: 121 SFIESFPLFGYSXXXXXXXXXXXXXXXXKIRASEKVTWRGGHRPAINNLPVYPRAVQDPL 180 SFIESFPLFGYS +I EKV+W+G HR AI+NL VYPRAVQDPL Sbjct: 121 SFIESFPLFGYSLEDYDELFDEKLELLLQITKEEKVSWQGNHRAAIDNLAVYPRAVQDPL 180 Query: 181 PVWIASGGNPESAIRAGMLGLPIAFAIIGGMPERFAPLVQLYKDAAAKAGHNPDKLQIAT 240 PVWIA+GGNP+SAIRAG+LGLP+ FAIIGGMPERFAPLV+LYK+A +AGH+P K+QI + Sbjct: 181 PVWIATGGNPQSAIRAGVLGLPVCFAIIGGMPERFAPLVELYKEAYIRAGHDPKKMQIGS 240 Query: 241 HSHGFVGETTEQAAALFYPSTMAQMNVIGRERGWGQAYNRATYDDARSLRGALYVGDAEY 300 HSHGF+ +T +A LFYP+ A MNVIGRERGW Y YD ARS+RGALYVG+AEY Sbjct: 241 HSHGFISDTDTRATELFYPAQQAMMNVIGRERGW-PPYTFEAYDAARSMRGALYVGEAEY 299 Query: 301 VAEKILLLRKNLGVTRFFLHVNVGTMPHREVLRAIELLGTKVAPIVRRELAKGA 354 VAEKI+LL KNLG+TRFFLHV+ ++PH++++RAIELLGTKVAPIVR+E+ A Sbjct: 300 VAEKIILLHKNLGLTRFFLHVDTSSIPHKDMMRAIELLGTKVAPIVRKEIGASA 353 >B3KBS2.1 B3KBS2_9BACI Luciferase family protein Length = 355 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/352 (66%), Positives = 272/352 (77%), Gaps = 4/352 (1%) Query: 1 MSEMENSMEIGISTFLETTPDPVTGEVISHAERLREAVEEIVLADQVGLDVYGIGEHHRI 60 MS N+MEIG+STFL P +SHA+RLR+A+EEI LADQVGLDVY IGEHHRI Sbjct: 1 MSGQTNTMEIGMSTFLHANPG---NGGVSHAQRLRQAIEEIQLADQVGLDVYAIGEHHRI 57 Query: 61 DYXXXXXXXXXXXXXXMTKNIRLTSAVTVLSSDDPVRVYQAFSTLDGLSGGRAEIMAGRG 120 +Y TK IRL+SAVTVLSSDDPVR+YQ F+TLDGLS GRAEIMAGRG Sbjct: 58 EYTSSSPAVILAAAAATTKRIRLSSAVTVLSSDDPVRIYQDFATLDGLSNGRAEIMAGRG 117 Query: 121 SFIESFPLFGYSXXXXXXXXXXXXXXXXKIRASEKVTWRGGHRPAINNLPVYPRAVQDPL 180 SFIESFPLFGY KIRASEKVTWRGGHRPAI+N+ VYPRA Q PL Sbjct: 118 SFIESFPLFGYDLKDYEELYEEKLELLLKIRASEKVTWRGGHRPAIDNMGVYPRAQQQPL 177 Query: 181 PVWIASGGNPESAIRAGMLGLPIAFAIIGGMPERFAPLVQLYKDAAAKAGHNPDKLQIAT 240 PVWI +GG+PESA+RAG+LGLPIAF+I+GG P+RFAPLV+LYK+AA KAGH+P+KLQIAT Sbjct: 178 PVWIGTGGSPESAVRAGLLGLPIAFSILGGAPQRFAPLVELYKEAAVKAGHDPNKLQIAT 237 Query: 241 HSHGFVGETTEQAAALFYPSTMAQMNVIGRERGWGQAYNRATYDDARSLRGALYVGDAEY 300 HSHGF+ T ++AA +YP QMN IGRERGW Y R +YD ARSL GALYVGD EY Sbjct: 238 HSHGFISNTAQEAAKRYYPVMAGQMNHIGRERGW-STYTRDSYDSARSLHGALYVGDPEY 296 Query: 301 VAEKILLLRKNLGVTRFFLHVNVGTMPHREVLRAIELLGTKVAPIVRRELAK 352 VAEKI+LL KNLG+TRF ++ + ++PHR++LR IELLGTKVAPIVR+ELA+ Sbjct: 297 VAEKIVLLHKNLGLTRFMMYNDFSSLPHRDLLRTIELLGTKVAPIVRKELAR 348 >B3K8C3.1 B3K8C3_9BACI Luciferase family protein Length = 353 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/345 (67%), Positives = 266/345 (77%), Gaps = 1/345 (0%) Query: 8 MEIGISTFLETTPDPVTGEVISHAERLREAVEEIVLADQVGLDVYGIGEHHRIDYXXXXX 67 MEIG+S+F+ET PD TGEV+SHA+RLRE VEEIVLADQVGLDVYG+GEHHR DY Sbjct: 1 MEIGVSSFVETWPDVKTGEVMSHAQRLREVVEEIVLADQVGLDVYGVGEHHRKDYAASSP 60 Query: 68 XXXXXXXXXMTKNIRLTSAVTVLSSDDPVRVYQAFSTLDGLSGGRAEIMAGRGSFIESFP 127 TK IRLTSAVTVLSS DPVRV+Q F+TLD +S GRAEIMAGRGSFIESFP Sbjct: 61 AVVLAAAASQTKWIRLTSAVTVLSSADPVRVFQDFATLDAISNGRAEIMAGRGSFIESFP 120 Query: 128 LFGYSXXXXXXXXXXXXXXXXKIRASEKVTWRGGHRPAINNLPVYPRAVQDPLPVWIASG 187 LFGY KIR SEKVTW+G HRPAI+NL VYPR VQ+PLPVWI SG Sbjct: 121 LFGYDLSHYDELFEEKLELLLKIRESEKVTWQGEHRPAIHNLGVYPRPVQNPLPVWIGSG 180 Query: 188 GNPESAIRAGMLGLPIAFAIIGGMPERFAPLVQLYKDAAAKAGHNPDKLQIATHSHGFVG 247 GN ES +RAG+LGLP+ AIIGG P +FAPLV+LYK+AAA AGH+ KL I +HSHGF+ Sbjct: 181 GNSESVVRAGLLGLPLVLAIIGGSPLQFAPLVKLYKEAAAHAGHDVSKLPIGSHSHGFIA 240 Query: 248 ETTEQAAALFYPSTMAQMNVIGRERGWGQAYNRATYDDARSLRGALYVGDAEYVAEKILL 307 E TE AA F+PST A MNV+GRERGWG Y+RA +D ARS GALYVGD E VAEKI+ Sbjct: 241 EETELAADKFFPSTQASMNVLGRERGWGY-YDRARFDAARSFEGALYVGDPETVAEKIIH 299 Query: 308 LRKNLGVTRFFLHVNVGTMPHREVLRAIELLGTKVAPIVRRELAK 352 LRK++G+TRF LHV VGTMPH EV+RAIELLGT+VAP VR+E+ + Sbjct: 300 LRKHVGITRFMLHVPVGTMPHDEVMRAIELLGTEVAPRVRKEIDR 344 >C0ZIR1.1 C0ZIR1_BREBN Putative uncharacterized protein Length = 350 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/345 (65%), Positives = 262/345 (75%), Gaps = 1/345 (0%) Query: 8 MEIGISTFLETTPDPVTGEVISHAERLREAVEEIVLADQVGLDVYGIGEHHRIDYXXXXX 67 MEIGI++F+ETTPD TGEV+SHA+RLRE VEEIVLADQVGLDV+GIGEHHR DY Sbjct: 1 MEIGITSFVETTPDVQTGEVMSHAQRLREVVEEIVLADQVGLDVFGIGEHHRKDYAASSP 60 Query: 68 XXXXXXXXXMTKNIRLTSAVTVLSSDDPVRVYQAFSTLDGLSGGRAEIMAGRGSFIESFP 127 +TK IRLTSAVTVLSS DPVRV+Q F+TLDG+S GRAEIMAGRGSFIESFP Sbjct: 61 AMVLAAAAPLTKRIRLTSAVTVLSSADPVRVFQDFATLDGISNGRAEIMAGRGSFIESFP 120 Query: 128 LFGYSXXXXXXXXXXXXXXXXKIRASEKVTWRGGHRPAINNLPVYPRAVQDPLPVWIASG 187 LFGY KI+ASEKVTWRGGHRPAI NL VYPR VQ+PLP+WI SG Sbjct: 121 LFGYDLNDYDELFEEHLELLLKIQASEKVTWRGGHRPAIQNLGVYPRPVQNPLPIWIGSG 180 Query: 188 GNPESAIRAGMLGLPIAFAIIGGMPERFAPLVQLYKDAAAKAGHNPDKLQIATHSHGFVG 247 GN ES +RAG+LGLP+ AIIGG P +F PLVQLYK A AGH+ +L + +HS GFV Sbjct: 181 GNQESVVRAGLLGLPLMLAIIGGSPRQFEPLVQLYKKVAMHAGHDVSRLTVGSHSLGFVA 240 Query: 248 ETTEQAAALFYPSTMAQMNVIGRERGWGQAYNRATYDDARSLRGALYVGDAEYVAEKILL 307 E TE AA F+PST A MN IGRERGW YNRA++D ARSL GALYVGD E VA+KI+ Sbjct: 241 EETELAADTFFPSTQAGMNKIGRERGWAH-YNRASFDAARSLEGALYVGDPETVAQKIIH 299 Query: 308 LRKNLGVTRFFLHVNVGTMPHREVLRAIELLGTKVAPIVRRELAK 352 LRK +G+TRF ++V + TMPH +V+RAIELLGT+VAP VR E+ K Sbjct: 300 LRKQVGMTRFMMYVPISTMPHEQVMRAIELLGTEVAPRVREEITK 344 >B4AIF1.1 B4AIF1_BACPU Oxidoreductase Length = 350 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/345 (64%), Positives = 264/345 (76%), Gaps = 1/345 (0%) Query: 8 MEIGISTFLETTPDPVTGEVISHAERLREAVEEIVLADQVGLDVYGIGEHHRIDYXXXXX 67 ME+GISTF+ETTPD TG+ +SHA+R+RE VEEI+LADQVGLDV+G+GEHHR D+ Sbjct: 1 MELGISTFVETTPDFQTGKTVSHAQRIREVVEEIILADQVGLDVFGVGEHHRQDFAASNP 60 Query: 68 XXXXXXXXXMTKNIRLTSAVTVLSSDDPVRVYQAFSTLDGLSGGRAEIMAGRGSFIESFP 127 TKNIRLTSAVTVLSS DPVRV+Q F+TLDGLS GRAEIMAGRGSFIESFP Sbjct: 61 AVVLAAAATQTKNIRLTSAVTVLSSADPVRVFQDFATLDGLSNGRAEIMAGRGSFIESFP 120 Query: 128 LFGYSXXXXXXXXXXXXXXXXKIRASEKVTWRGGHRPAINNLPVYPRAVQDPLPVWIASG 187 LFGY K++ SE+VTW G HRPAI ++ VYPR VQDPLP+WI SG Sbjct: 121 LFGYDLDDYEELFEEKLDLLLKLQQSERVTWSGKHRPAIQDVGVYPRPVQDPLPIWIGSG 180 Query: 188 GNPESAIRAGMLGLPIAFAIIGGMPERFAPLVQLYKDAAAKAGHNPDKLQIATHSHGFVG 247 GN ES +RAG+LGLP+ AIIGG P +FAPLVQLYK AA AGH+P+KL +A+HSHGFV Sbjct: 181 GNRESVVRAGLLGLPLVLAIIGGSPRQFAPLVQLYKQAAVHAGHDPEKLTVASHSHGFVA 240 Query: 248 ETTEQAAALFYPSTMAQMNVIGRERGWGQAYNRATYDDARSLRGALYVGDAEYVAEKILL 307 E TE AA F+PST MN + RERGWG Y R+T+D AR+L GALYVGD++ VAEK++ Sbjct: 241 EETELAADQFFPSTQHVMNTLARERGWG-PYTRSTFDAARTLEGALYVGDSDAVAEKVIH 299 Query: 308 LRKNLGVTRFFLHVNVGTMPHREVLRAIELLGTKVAPIVRRELAK 352 LRKN+G+TRF LHV VG+MPH +VL+AIEL G +VAP VR E+A+ Sbjct: 300 LRKNVGITRFMLHVPVGSMPHDQVLKAIELFGKEVAPKVREEVAR 344 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,928,789,617 Number of extensions: 74683490 Number of successful extensions: 187436 Number of sequences better than 1.0e-05: 500 Number of HSP's gapped: 186720 Number of HSP's successfully gapped: 500 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)