BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0024.p (345 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D967.1 B1D967_9BACL Putative uncharacterized protein 104 1e-20 C0YMU9.1 C0YMU9_9FLAO Possible glycosyl hydrolase, BNR protein 72 8e-11 Q67SR7.1 Q67SR7_SYMTH Putative uncharacterized protein 71 2e-10 A3ZLL9.1 A3ZLL9_9PLAN BNR/Asp-box repeat protein 65 9e-09 C4KAZ3.1 C4KAZ3_9RHOO Putative uncharacterized protein 62 9e-08 >B1D967.1 B1D967_9BACL Putative uncharacterized protein Length = 428 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/337 (28%), Positives = 147/337 (43%), Gaps = 23/337 (6%) Query: 18 NFSDIQFLNADTGRAAGNGFMIGTSDGGCHFQEIYKGQWSFRQIDFPDNVHGWALASVKG 77 N + ++ ++ G AGNG + T DGG H++ Y G QI + WA Sbjct: 96 NVTALRLADSKAGWVAGNGQIARTDDGGAHWRLQYSGSKPINQIFALSSNKVWATIGDSN 155 Query: 78 TAAAYLIATADGGSTWKRLTDTATVFDR--IDFKDNKQGFGYSLASTYYTKDGGRTWRLI 135 + LI + +GG +W T TV + + F ++K F + TKDGG+TW + Sbjct: 156 AKSLILIQSTNGGKSW---TKAGTVPNHGFLHFTNDKTAF----SGNAMTKDGGKTWTEL 208 Query: 136 PTPANTR-SAEFTSASSGYAVVVAPGAGYRIMKTSDGGATWSLSL-KSAFAYPESGRVYA 193 TP F ++G+AV V G M T +GG TW+ + + A P + + Sbjct: 209 QTPGKEIGEVYFHDVNNGWAVQVVNGR-LLFMHTGNGGKTWNTVMTRKTEAAPNDVIIRS 267 Query: 194 N-GDQVYALLYGGSGMSQTSYSLYASSNKGKSWSRVIXXXXXXXXXXX--XXXXXXLTTG 250 + + L G SGMSQTSYSL+ +++ GK+W I + G Sbjct: 268 TAANDAWIELIGDSGMSQTSYSLFHTADGGKTWLPAIVKNGAGSGPAPGFTMDDASVPKG 327 Query: 251 PASGKPGNMQLVGSSAAFLFGFSPAAEKV-AVGRTYNGGKKWT-NLPAIPGYDGLISFTG 308 S PG + +V A + G A +K + +T +GGK WT GY F G Sbjct: 328 MTSSAPGTLYVVNPQTAIMGGQCSACDKPNTIMKTTDGGKHWTIGKSEFTGYG--TQFIG 385 Query: 309 VTEG----WMAVRGQNASSLYATEDGGSTWKLKFAFK 341 ++ ++ NA+ L + DGG TW F FK Sbjct: 386 ASDASHIWFITTDATNAAVLNTSSDGGKTWHKAFTFK 422 >C0YMU9.1 C0YMU9_9FLAO Possible glycosyl hydrolase, BNR protein Length = 688 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 135/330 (40%), Gaps = 59/330 (17%) Query: 21 DIQFLNADTGRAAGN-GFMIGTSDGGC-----HFQEIYKGQWSFRQIDFPDNVHGWALAS 74 D FL+ + G A GN G T++GG FQ Y S I F D+ G+A Sbjct: 237 DFYFLDENNGFATGNYGATYKTTNGGITWSQIFFQNGYFDNTSMYGIFFQDSNKGFATG- 295 Query: 75 VKGTAAAYLIATADGGSTWKRLTDTATVFDRIDFKDNKQGFGYSLASTYYTKDGGRTWRL 134 A +I T DGG+TW + + T F ++ +N GF + Y T + G TW L Sbjct: 296 ----ARGRIIKTIDGGNTWTQHSPTYNDFRQLQIVNN-VGFALTNNQFYKTNNFGDTWTL 350 Query: 135 I-----PTPANTRSAEFTSASSGYAVVVAPGAGYRIMKTSDGGATWSLSLKSAFAYPESG 189 + T N+ F + + GYA G+ + KT+DGG+TW + Sbjct: 351 VGTLNLGTSVNSSDFTFINENLGYATTGGTYGGH-VYKTTDGGSTWEI-------LNNGN 402 Query: 190 RVYANGDQVYALLYGGSGMSQTSYS---LYASSNKGKSWSRVIXXXXXXXXXXXXXXXXX 246 + G L G +G ++ + ++N G SW++V Sbjct: 403 DIIDEGISSICFLDGNTGFISGGFNQKKVMKTTNGGSSWTQV------------------ 444 Query: 247 LTTGPASGKPGNMQLVGSSAAFLFGFSPAAEKV--AVGRTYNGGKKWTNLPAIPGYDGLI 304 ++ GN+Q V S L G++ A+ +T +GG W L + G DG+ Sbjct: 445 -----SNQAFGNIQFVNS----LVGYANRVGNYYGAMYKTIDGGNTWNQLIELAG-DGIN 494 Query: 305 SFTGVTEGWMAVRGQNASSLYATEDGGSTW 334 SF V E G N S Y T +GG +W Sbjct: 495 SFHFVDENNGYFAGDN-SIFYKTTNGGLSW 523 >Q67SR7.1 Q67SR7_SYMTH Putative uncharacterized protein Length = 345 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 134/341 (39%), Gaps = 44/341 (12%) Query: 14 TAPLNFSDIQFLNADTGRAAGNGFMIGTSDGGCHFQEIYKGQWSFRQIDFPDNVHGWALA 73 +AP + + FLN G + T DGG ++ + Q ++ F D +GWAL Sbjct: 21 SAPAVPTAVAFLNESHGWVGAADGIWHTQDGGQNWTLQFPSQEPVIRLGFLDPQNGWAL- 79 Query: 74 SVKGTAAAYLIATADGGSTWKRLTDTATVFDRIDFKDNKQGFGYSLASTYYTKDGGRTWR 133 T +A L+ T +GG W +DF ++DGG+TW Sbjct: 80 ----TGSAALLRTENGGEDWSAAETPGAALRAVDFVGPAHVVATDGNGLLVSRDGGKTWD 135 Query: 134 LIPTPANTRSAEFTSASSGYAVVVAPGAGYRIMKTSDGGATWSLSLKSAFAYPESGR--- 190 +P +F SA G+A G G +I T DGG TWS L PE + Sbjct: 136 RTSSPLPFSDLDFVSAEEGWAA----GEG-QIWHTRDGGTTWSAQLT----LPEPDKWLG 186 Query: 191 ----VYANGDQVYALLYGGSGM-SQTSYSLYASSNKGKSWS-RVIXXXXXXXXXXXXXXX 244 + + + L G G SQ +Y LY++++ G++W+ R+I Sbjct: 187 HTFVRFTSESSGWVLFCLGQGAGSQETYLLYSTTDAGRTWTPRLIGRWPWPFAEPAPEA- 245 Query: 245 XXLTTGPASGKPGNMQLVGSSA--AFLFGFSPAAEKVAVGRTYNGG-------KKWTNLP 295 G G+ +G+ A A++ +SPA + V R GG K P Sbjct: 246 -------PHGPGGHPVALGAWAETAWVAVYSPAGGHLEVARVTMGGAPPVVSDKIPVGGP 298 Query: 296 AIPGYDGLISFTGVTEGWMAVRGQNAS--SLYATEDGGSTW 334 A P +SF GW+ V + ++ T DGG W Sbjct: 299 AKPTAG--LSFVDPKTGWLVVSDSQRTQGAILRTADGGQFW 337 >A3ZLL9.1 A3ZLL9_9PLAN BNR/Asp-box repeat protein Length = 1021 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 79/345 (22%), Positives = 134/345 (38%), Gaps = 60/345 (17%) Query: 10 AASGTAPLNFSDIQFLNADTGRAAGN-GFMIGTSDGGCHFQEIYKG-QWSFRQIDFPDNV 67 AAS + + D+ F N TG A G+ G + T DGG H+++I G S + I F D+ Sbjct: 27 AASYSGDASLHDVHFQNPHTGFAVGDHGVIWSTRDGGSHWEQIPSGVDVSLQAISFADDQ 86 Query: 68 HGW----ALASVKGTAAAYLIATADGGSTWKRLTDT-ATVFDRIDFKDNKQGFGYSLAST 122 GW + + ++ T DGG +W+ +++ F D GF + S Sbjct: 87 RGWIVGGQITPYSRISRGVVLRTIDGGRSWREISNLGVPCLHDAAFADANHGFAVADPSP 146 Query: 123 YY------TKDGGRTWR--LIPTPANTRSAEFTSASSGYAVVVAPGAGYRIMKTSDGGAT 174 Y T+DGGR+WR I P RS + + PG G ++ +DG Sbjct: 147 IYPTGLFETRDGGRSWRPLAIDKPHPWRS-----------LALLPGRGV-LLSAADGATA 194 Query: 175 W--SLSLKSAFAYPESGRVYANGDQVYALLYGGSGMSQTSYSLYASSNKGKSWSRVIXXX 232 W + + ++ R + QV L G + + + + S+++G SW+ Sbjct: 195 WFDEGVYRESIPADQNRRTH----QVALDLQGATAVVGDAGLVMTSTDRGISWTSRTSNL 250 Query: 233 XXXXXXXXXXXXXXLTTGPAS--GKPGNMQLVGSSAAFLFGFSPAAEKVAVGRTYNGGKK 290 ++ + G PG++ L +++GG Sbjct: 251 PGVTGRQFDAHGVSISGDRITIVGSPGSLTLT---------------------SHDGGAN 289 Query: 291 WTNLPA-IPGYDGLISFTGVTEGWMAVRGQNASSLYATEDGGSTW 334 W P I ++F T GW + ++ T DGG++W Sbjct: 290 WETSPTGIRTPLHAVTFVNSTNGWAV---GSLGTILTTHDGGASW 331 >C4KAZ3.1 C4KAZ3_9RHOO Putative uncharacterized protein Length = 343 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 27/206 (13%) Query: 35 NGFMIGTSDGGCHFQE--IYKGQWSFRQIDFPDNVHGWALASVKGTAAAYLIATADGGST 92 G ++ + D G H+++ + + F D GWA+ + ++ +ADGG T Sbjct: 85 RGVVLLSDDEGAHWRQAGTVPVDATLTAVSFADAREGWAVGHL-----GVILHSADGGET 139 Query: 93 WKRLTDTATVFDR----IDFKDNKQGFGYSLASTYY-TKDGGRTW---RLIPTPANTRS- 143 W + V DR + F D + G L S T+DGGRTW L P P +TR+ Sbjct: 140 WS-VQRIDPVEDRPLFAVAFTDARNGVAVGLWSLMLRTRDGGRTWEAAELPPPPGDTRAD 198 Query: 144 AEFTSA-SSGYAVVVAPGAGYRIMKTSDGGATWSLSLKSAFAYPESGRVYANGDQVYALL 202 A S G + G ++++ DGGATWS SG A+G + L Sbjct: 199 ANLMSVFGDGEGRLFIAGERGLVLRSLDGGATWSYHPTGYRGTFWSGTALADGTLIVGGL 258 Query: 203 YGGSGMSQTSYSLYASSNKGKSWSRV 228 G S+Y S++ G+ W RV Sbjct: 259 RG---------SVYRSTDNGEHWQRV 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,236,517,751 Number of extensions: 97283460 Number of successful extensions: 225462 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 225523 Number of HSP's successfully gapped: 37 Length of query: 345 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 209 Effective length of database: 1,779,438,163 Effective search space: 371902576067 Effective search space used: 371902576067 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)