BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0020.p
         (157 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0GJA6.1 C0GJA6_9FIRM Transcriptional regulator, AbrB family           82   2e-14
B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family           80   8e-14
C1FRC4.1 C1FRC4_CLOBJ Transcriptional regulator, AbrB family           79   1e-13
C0GH27.1 C0GH27_9FIRM Transcriptional regulator, AbrB family           79   1e-13
A4J0L1.1 A4J0L1_DESRM Transcriptional regulator, AbrB family           77   5e-13

>C0GJA6.1 C0GJA6_9FIRM Transcriptional regulator, AbrB family
          Length = 84

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          +K TG++R +D LGR+V+P+E+R T  IDI D +E ++ D E I+L+KY    C FC + 
Sbjct: 2  LKSTGIVRKVDELGRVVIPIELRRTLGIDIKDSLEIYV-DSEKIILKKYEPA-CLFCGNA 59

Query: 61 DHVSYYKDQFICNSCLKELGNPDR 84
          DHV ++K + +C  C+KE+   ++
Sbjct: 60 DHVKHHKGRIVCEDCVKEMAGEEK 83


>B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family
          Length = 80

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R +D LGR+V+P+E+R T NID  DP+E F+ DE+II L+KY    C FC + 
Sbjct: 1  MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKII-LKKYEPA-CIFCGNA 58

Query: 61 DHVSYYKDQFICNSCLKELG 80
          D    +K + IC +CL E+ 
Sbjct: 59 DDTVEFKGKVICKNCLNEMA 78


>C1FRC4.1 C1FRC4_CLOBJ Transcriptional regulator, AbrB family
          Length = 79

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R LD+LGR+V+P E+R T N+D  DP+E ++ D E I+L+KY    C FC   
Sbjct: 1  MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYV-DGEQIILKKYAPA-CIFCGEA 58

Query: 61 DHVSYYKDQFICNSCLKELG 80
          + V  +K + IC  CLKELG
Sbjct: 59 NEVINFKGKNICKICLKELG 78


>C0GH27.1 C0GH27_9FIRM Transcriptional regulator, AbrB family
          Length = 82

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R +D LGRIV+P+E+R   NIDI D +E F+  E+II LRKY    C FC + 
Sbjct: 1  MKSTGIVRKVDELGRIVIPIELRRVLNIDIKDSLEIFVEGEKII-LRKYQPA-CVFCENA 58

Query: 61 DHVSYYKDQFICNSCLKELGN 81
          + V  +K + +C+ C KE+ +
Sbjct: 59 EDVHQHKGRMVCHECAKEISH 79


>A4J0L1.1 A4J0L1_DESRM Transcriptional regulator, AbrB family
          Length = 86

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R +D LGR+V+P+E+R T  ID  D +E ++ D E I+LRKY    C FC + 
Sbjct: 1  MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYV-DNEKIILRKYEPA-CVFCGNA 58

Query: 61 DHVSYYKDQFICNSCLKELG 80
            V++YK + +C+ C+  +G
Sbjct: 59 SDVTHYKGKMVCHECIAAMG 78


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 884,018,979
Number of extensions: 34492131
Number of successful extensions: 111311
Number of sequences better than 1.0e-05: 313
Number of HSP's gapped: 111236
Number of HSP's successfully gapped: 314
Length of query: 157
Length of database: 3,060,696,203
Length adjustment: 118
Effective length of query: 39
Effective length of database: 1,949,016,433
Effective search space: 76011640887
Effective search space used: 76011640887
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)