BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0019.p (168 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKA6.1 B3KKA6_9BACI Putative uncharacterized protein 231 2e-59 B1DK95.1 B1DK95_9BACL Conserved hypothetical cytosolic protein 201 2e-50 B7GMK3.1 B7GMK3_ANOFW Uncharacterized conserved protein 166 7e-40 B7ST95.1 B7ST95_BACIN Putative uncharacterized protein ywhD 164 2e-39 A8FIH4.1 A8FIH4_BACP2 Putative uncharacterized protein ywhD 164 2e-39 >B3KKA6.1 B3KKA6_9BACI Putative uncharacterized protein Length = 172 Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 110/167 (65%), Positives = 134/167 (80%), Gaps = 1/167 (0%) Query: 2 DNNQPEG-KKPMALNIVNAKSKHKGFGAGSIDLNNVSPVIIDGGEAVIDIGAMHAKSKVE 60 + +Q +G KKP+ALNI+N+KSKHKGFG+GSIDLN++SPVIID GEA +DIGAMHAKSKVE Sbjct: 3 NEDQKQGAKKPIALNIINSKSKHKGFGSGSIDLNSLSPVIIDNGEARVDIGAMHAKSKVE 62 Query: 61 KGIKFSPNREDVPNGRQVWVVWVAVDRTPEGQSYGGVTACEMWIDTEARRGWKILADHVN 120 KGI+FS NR++VPNGRQVW+VWVAVDRT EGQ Y G+TACEMWID +ARRGWKILADHVN Sbjct: 63 KGIRFSMNRDEVPNGRQVWIVWVAVDRTAEGQHYAGMTACEMWIDHDARRGWKILADHVN 122 Query: 121 KLDSALKRRVIXXXXXXXXXXXXXXXXIAHNAEWWDASTAELKAALS 167 K+D+A+KR++I I+ N EWW+AS E + AL Sbjct: 123 KMDAAMKRKIILDGLGDVEKKALRELLISRNEEWWNASPEEFREALQ 169 >B1DK95.1 B1DK95_9BACL Conserved hypothetical cytosolic protein Length = 173 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/159 (62%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 9 KKPMALNIVNAKSKHKGFGAGSIDLNNVSPVIIDGGEAVIDIGAMHAKSKVEKGIKFSPN 68 KK ++LN+V+ K +HKGFGAG+IDL+ VS VIID G A ID GAMHAKSKVE+GIKFSPN Sbjct: 16 KKSLSLNVVSNK-QHKGFGAGTIDLSAVSCVIIDNGVAYIDDGAMHAKSKVERGIKFSPN 74 Query: 69 REDVPNGRQVWVVWVAVDRTPEGQSYGGVTACEMWIDTEARRGWKILADHVNKLDSALKR 128 +ED PNGR+ W+VW AV+R EG Y G TACEMWIDTEARRGWKILADHVNKLD+A+KR Sbjct: 75 KEDCPNGRKCWIVWTAVERGEEGSYYAGATACEMWIDTEARRGWKILADHVNKLDAAIKR 134 Query: 129 RVIXXXXXXXXXXXXXXXXIAHNAEWWDASTAELKAALS 167 + HN EWW+ S ELK AL+ Sbjct: 135 KYKLEELDAEEKAAFRKLLAEHNEEWWNNSPEELKEALA 173 >B7GMK3.1 B7GMK3_ANOFW Uncharacterized conserved protein Length = 168 Score = 166 bits (420), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 84/164 (51%), Positives = 106/164 (64%), Gaps = 4/164 (2%) Query: 7 EGKKPMALNIVNAKSK-HKGFGAGSIDLNNVSPVIID--GGEAVIDIGAMHAKSKVEKGI 63 E KKPM NI+ + K H FG G + L NVSPVIID GEA ID+GAMHA+S VEKGI Sbjct: 3 EKKKPM-FNIIKKEPKVHGTFGTGVLSLANVSPVIIDVEAGEAFIDMGAMHARSVVEKGI 61 Query: 64 KFSPNREDVPNGRQVWVVWVAVDRTPEGQSYGGVTACEMWIDTEARRGWKILADHVNKLD 123 KF+PNR++VPNG+ W+VWV +D+ EG Y GVTACEM +D ARRG+K L +HVN++D Sbjct: 62 KFTPNRDEVPNGKPYWLVWVTIDQAEEGAYYAGVTACEMTVDRAARRGYKSLPEHVNRMD 121 Query: 124 SALKRRVIXXXXXXXXXXXXXXXXIAHNAEWWDASTAELKAALS 167 +LKR +I HN + W+ S+ ELK L Sbjct: 122 KSLKRHIIVDHMDARSKEVLASFLQQHNRDMWERSSEELKRQLQ 165 >B7ST95.1 B7ST95_BACIN Putative uncharacterized protein ywhD Length = 172 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 108/164 (65%), Gaps = 5/164 (3%) Query: 9 KKPMALNIV---NAKSKHKGFGAGSIDLNNVSPVIID--GGEAVIDIGAMHAKSKVEKGI 63 KKP+ NI+ +A H GFGAG++ L+N+SPVIID EAVIDIGAMHA+S VEKGI Sbjct: 6 KKPIGFNIIKKTDATDGHGGFGAGALSLDNISPVIIDVEEKEAVIDIGAMHARSAVEKGI 65 Query: 64 KFSPNREDVPNGRQVWVVWVAVDRTPEGQSYGGVTACEMWIDTEARRGWKILADHVNKLD 123 KF ++E+VPNG+ W+VWV +DR +G Y GVTACEM +D RRG+K L +HVN +D Sbjct: 66 KFLKSKEEVPNGKPYWLVWVTIDRREDGPYYAGVTACEMTVDRSIRRGYKSLPEHVNLMD 125 Query: 124 SALKRRVIXXXXXXXXXXXXXXXXIAHNAEWWDASTAELKAALS 167 ++KR+++ +HN W+AST ELK LS Sbjct: 126 KSMKRKIVVSHMDDVSKKVLADFLKSHNKALWEASTDELKEGLS 169 >A8FIH4.1 A8FIH4_BACP2 Putative uncharacterized protein ywhD Length = 172 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 107/164 (65%), Gaps = 5/164 (3%) Query: 9 KKPMALNIV---NAKSKHKGFGAGSIDLNNVSPVIID--GGEAVIDIGAMHAKSKVEKGI 63 KKP+ NI+ +A H GFGAG++ L+N+SPVIID EAVIDIGAMHA+S VEKGI Sbjct: 6 KKPIGFNIIKKTDATDGHGGFGAGALSLDNISPVIIDVEEKEAVIDIGAMHARSAVEKGI 65 Query: 64 KFSPNREDVPNGRQVWVVWVAVDRTPEGQSYGGVTACEMWIDTEARRGWKILADHVNKLD 123 KF +E+VPNG+ W+VWV +DR EG Y GVTACEM +D RRG+K L +HVN +D Sbjct: 66 KFLKTKEEVPNGKPYWLVWVTIDRREEGPYYAGVTACEMTVDRSIRRGYKSLPEHVNLMD 125 Query: 124 SALKRRVIXXXXXXXXXXXXXXXXIAHNAEWWDASTAELKAALS 167 ++KR+++ +HN W+AST ELK L+ Sbjct: 126 KSMKRKIVVSHMDDVSKKVLADFLKSHNEALWEASTDELKEGLA 169 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 983,203,834 Number of extensions: 38689407 Number of successful extensions: 55637 Number of sequences better than 1.0e-05: 131 Number of HSP's gapped: 55406 Number of HSP's successfully gapped: 131 Length of query: 168 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 43 Effective length of database: 1,883,069,328 Effective search space: 80971981104 Effective search space used: 80971981104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)