BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0017.p
         (243 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKA4.1 B3KKA4_9BACI Putative uncharacterized protein                174   8e-42
B1DK97.1 B1DK97_9BACL Putative uncharacterized protein                 96   3e-18

>B3KKA4.1 B3KKA4_9BACI Putative uncharacterized protein
          Length = 275

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 146/241 (60%), Gaps = 2/241 (0%)

Query: 1   MYKFVKSAVVPVLLRYPDQHAGGSGLGRLLYYVEGQFALGSDPAVQHWXXXXXXXXXXXX 60
           +Y+ VKSAVVP+L+RYPD  +  + L RLL++ EG+ +L     V  +            
Sbjct: 33  LYRLVKSAVVPLLMRYPD--SAPNELSRLLFFYEGEMSLSLSGTVHTYGWLLAALLLIRM 90

Query: 61  XVSPFIRAGLLHELHQERKGERGMFFFPGMRLYGLPVMLFSLIEWVLAALPLYWLFPKMY 120
             +P IRAG+ + LHQE KGERG+FFF GM+    PV +F LIE VL  +P YW+ PK+ 
Sbjct: 91  VCTPLIRAGIFYNLHQEAKGERGLFFFTGMQKLWKPVTVFYLIELVLTFVPGYWILPKIL 150

Query: 121 NLLLSGILDYRQLLKLVPYVLAWLVYLFFIRKLLLYMQFGYTAGTGILPSLLVCLKVIVP 180
            +LL+GI +   LL  +P+   W +Y + IR LLLYMQFG T  +G++ S+L   + +  
Sbjct: 151 PILLNGIHEPVMLLHALPHAAGWFLYAYLIRLLLLYMQFGRTDNSGMISSVLALFRRLGT 210

Query: 181 SVGLSLVLGACGLVMMLICGATALLSPGLPAFLLRQFSPLPTTLFKMWGIAAQYHLWRSK 240
           +V LSL +G    V++L+  + +L   GL   +++Q S     LF++W I+AQYHLWR  
Sbjct: 211 AVLLSLTVGGSACVILLLLSSASLFWAGLIGLIIQQASYFLNGLFQIWVISAQYHLWRDS 270

Query: 241 T 241
           +
Sbjct: 271 S 271


>B1DK97.1 B1DK97_9BACL Putative uncharacterized protein
          Length = 273

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 5/242 (2%)

Query: 1   MYKFVKSAVVPVLLRYPDQHAGGSGLGRLLYYVEGQFALGSDPAVQHWXXXXXXXXXXXX 60
           +Y+F+ S V P+L R+PD     + +   L+  E QF +     +  +            
Sbjct: 33  LYRFIDSVVAPLLRRFPDHSPSKAAVQ--LFLSEAQFQIMKTDLLTPYLWLLGGLFAARM 90

Query: 61  XVSPFIRAGLLHELHQERKGERGMFFFPGMRLYGLPVMLFSLIEWVLAALPLYWLFPKMY 120
            +SP   AGLL+ L Q      G  F  G+R    PV L   IE +LA  P +WL PK  
Sbjct: 91  LLSPLFNAGLLYSL-QHATDTGGTQFLQGIRRAWKPVTLLYWIETILALAPAWWLLPKGL 149

Query: 121 NLLLSGILDYRQLLKLVPYVLAWLVYLFFIRKLLLYMQFGYTAGT--GILPSLLVCLKVI 178
             LL        L + +P    WL++   +  L L MQ G T+G   GI+ SL   +K +
Sbjct: 150 EALLHSRSIGDLLQQTLPAAGGWLLWGILLHLLFLAMQLGATSGKTGGIVQSLGTAVKHL 209

Query: 179 VPSVGLSLVLGACGLVMMLICGATALLSPGLPAFLLRQFSPLPTTLFKMWGIAAQYHLWR 238
           +P  GLSL++ A G  + L     +L+  G  A L+ Q   L  TL K+W +A+QY + R
Sbjct: 210 LPFAGLSLLMWAIGSGVGLFVSGFSLVWAGFIALLVHQGYHLVRTLMKVWTLASQYDILR 269

Query: 239 SK 240
           SK
Sbjct: 270 SK 271


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.147    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,490,571,799
Number of extensions: 59997570
Number of successful extensions: 180987
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 180983
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 111
Effective length of database: 1,817,122,223
Effective search space: 201700566753
Effective search space used: 201700566753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)