BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0016.p
         (142 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKA3.1 B3KKA3_9BACI NLP/P60 protein                                 191   3e-47
B1DK98.1 B1DK98_9BACL NLP/P60 protein                                 170   4e-41
B3KJJ5.1 B3KJJ5_9BACI NLP/P60 protein                                 155   2e-36
Q24WB9.1 Q24WB9_DESHY Putative uncharacterized protein                139   6e-32
B8I8D4.1 B8I8D4_CLOCE NLP/P60 protein                                 139   8e-32

>B3KKA3.1 B3KKA3_9BACI NLP/P60 protein
          Length = 157

 Score =  191 bits (484), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 113/134 (84%)

Query: 9   SAFADSKMDTVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTP 68
           SAFADSK++T I   IG +YK GGT+T+GFDCSGFT Y++K +GL+LPRTS AQ+ VGT 
Sbjct: 22  SAFADSKLNTAIKPAIGVSYKTGGTTTNGFDCSGFTSYIYKKLGLSLPRTSGAQYKVGTA 81

Query: 69  VSRNNLRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGAK 128
           V+++ L++GDLVFFNT G GVSHVGIYVG GKFA SSSSRGV I+ LSQ+Y+ANRYVGAK
Sbjct: 82  VAKSKLKAGDLVFFNTSGRGVSHVGIYVGGGKFAHSSSSRGVIISPLSQSYYANRYVGAK 141

Query: 129 RVMSTTAYQAVAYD 142
           RVMS + Y++VA +
Sbjct: 142 RVMSQSTYKSVAVN 155


>B1DK98.1 B1DK98_9BACL NLP/P60 protein
          Length = 155

 Score =  170 bits (431), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 104/136 (76%)

Query: 5   FGAGSAFADSKMDTVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFS 64
           F AGS FADSKMD +++  IGT Y  GGTST GFDCSGFT YVF  +G+ LPRTS +Q  
Sbjct: 17  FQAGSVFADSKMDGIVSNLIGTPYVAGGTSTKGFDCSGFTSYVFDKMGIDLPRTSTSQSE 76

Query: 65  VGTPVSRNNLRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRY 124
            G  +++++L +GDLVFFNT G GVSHVGIYVG+GKFA +SSS+GVTI++LS +Y+ NRY
Sbjct: 77  TGKKIAKSDLVAGDLVFFNTNGRGVSHVGIYVGDGKFAHASSSKGVTISNLSDSYYVNRY 136

Query: 125 VGAKRVMSTTAYQAVA 140
           V A+RVM  + +   A
Sbjct: 137 VTARRVMDPSTFDKYA 152


>B3KJJ5.1 B3KJJ5_9BACI NLP/P60 protein
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 102/138 (73%), Gaps = 2/138 (1%)

Query: 1   MVFTFGAGSAFADSKMD--TVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRT 58
           ++F+ GA SA+AD + +    + + +GT YK+GGT+TSGFDCSGF  Y+F+N  + LPRT
Sbjct: 13  IIFSSGAVSAYADQQPNFQHQVKQLVGTPYKWGGTTTSGFDCSGFILYMFRNFDMDLPRT 72

Query: 59  SKAQFSVGTPVSRNNLRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQA 118
           S++Q   G  V R +LR GDLVFFNT GSG+SH G+Y+G+G+FA +SSS+GV I+ LS +
Sbjct: 73  SQSQAKAGVHVDREDLRVGDLVFFNTSGSGISHAGVYIGDGQFAHASSSKGVRISKLSDS 132

Query: 119 YWANRYVGAKRVMSTTAY 136
           Y+  RYV A+RV+S   Y
Sbjct: 133 YYEPRYVTARRVLSQENY 150


>Q24WB9.1 Q24WB9_DESHY Putative uncharacterized protein
          Length = 274

 Score =  139 bits (351), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 2/123 (1%)

Query: 8   GSAFADSKMDTVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGT 67
           GS+ A+   D    K IGT Y FGGT+T+GFDCSGFT+YVFK  G+ LPRTS AQ+ +GT
Sbjct: 153 GSSKAEEISDNA-QKLIGTPYVFGGTTTNGFDCSGFTQYVFKGSGIDLPRTSYAQYGIGT 211

Query: 68  PVSRNNLRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGA 127
            VS++ L+ GDLVFF T+ SG SHVGIY+G   F  ++ S G+ IT LS +Y+A RY+GA
Sbjct: 212 AVSKDELQIGDLVFFATYDSGASHVGIYIGEENFIHAARS-GIKITGLSDSYYAGRYLGA 270

Query: 128 KRV 130
           +RV
Sbjct: 271 RRV 273


>B8I8D4.1 B8I8D4_CLOCE NLP/P60 protein
          Length = 265

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 91/121 (75%), Gaps = 3/121 (2%)

Query: 14  SKMDTVIA---KTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVS 70
           SK   VI+   K IG  Y +GGT+ SGFDCSG+ +YVF   G++LPRT+  Q++ G+ VS
Sbjct: 145 SKASVVISTAKKYIGVPYVWGGTTPSGFDCSGYIKYVFAKHGISLPRTAAEQYNAGSYVS 204

Query: 71  RNNLRSGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGAKRV 130
           + NL++GDLVFF T+  G SH+GIY+GNG F  +SSS+GV I+SLS +Y+A RY+GA+R+
Sbjct: 205 KANLKAGDLVFFTTYKPGPSHLGIYLGNGSFIHASSSQGVIISSLSNSYFAERYIGARRI 264

Query: 131 M 131
           +
Sbjct: 265 I 265


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 818,595,338
Number of extensions: 32926455
Number of successful extensions: 84833
Number of sequences better than 1.0e-05: 2910
Number of HSP's gapped: 80861
Number of HSP's successfully gapped: 2934
Length of query: 142
Length of database: 3,060,696,203
Length adjustment: 105
Effective length of query: 37
Effective length of database: 2,071,489,628
Effective search space: 76645116236
Effective search space used: 76645116236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)