BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0012.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKA0.1 B3KKA0_9BACI Cytochrome c class I                            164   3e-39
Q6HDM7.1 Q6HDM7_BACHK Cytochrome c-550                                 74   5e-12
Q81LU6.1 Q81LU6_BACAN Cytochrome c-550                                 74   6e-12
C3P8J7.1 C3P8J7_BACAA Cytochrome c-550                                 74   6e-12
C3LKX0.1 C3LKX0_BACAC Cytochrome c-550                                 74   6e-12

>B3KKA0.1 B3KKA0_9BACI Cytochrome c class I
          Length = 120

 Score =  164 bits (415), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 95/118 (80%)

Query: 1   MQKWIMSGLXXXXXXXXVVLMFTLPGKAEVAEENKPTMPEVQLDAAGAEATVKANCITCH 60
           MQKWIMSGL        + LMFTLPGK +VA+E KPTMPEV LDAA AEAT+KA+CI+CH
Sbjct: 3   MQKWIMSGLFFVACALAIALMFTLPGKEQVAQEEKPTMPEVTLDAAAAEATLKASCISCH 62

Query: 61  GDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAPEEIANVAMWLAEKK 118
           GDQLQGG GP+L Q GG  DA+ IF +VTKGR  MPSFKD+L PEEIAN+A++LAEKK
Sbjct: 63  GDQLQGGAGPALNQVGGHMDADAIFNVVTKGRKGMPSFKDQLKPEEIANIALYLAEKK 120


>Q6HDM7.1 Q6HDM7_BACHK Cytochrome c-550
          Length = 118

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   EEI  +++KG+G MP+  + +  
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKEEIQEVISKGKGNMPA--NIVPA 104

Query: 105 EEIANVAMWLAEKK 118
           ++ A VA WL++KK
Sbjct: 105 DQAAKVADWLSKKK 118


>Q81LU6.1 Q81LU6_BACAN Cytochrome c-550
          Length = 118

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   EEI  +++KG+G MP     L P
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKEEIQEVISKGKGNMPP---NLVP 103

Query: 105 -EEIANVAMWLAEKK 118
            ++ A VA WL++KK
Sbjct: 104 ADQAAKVADWLSKKK 118


>C3P8J7.1 C3P8J7_BACAA Cytochrome c-550
          Length = 118

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   EEI  +++KG+G MP     L P
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKEEIQEVISKGKGNMPP---NLVP 103

Query: 105 -EEIANVAMWLAEKK 118
            ++ A VA WL++KK
Sbjct: 104 ADQAAKVADWLSKKK 118


>C3LKX0.1 C3LKX0_BACAC Cytochrome c-550
          Length = 118

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)

Query: 45  AAGAEATVKANCITCHGDQLQGGVGPSLQQEGGKHDAEEIFTIVTKGRGQMPSFKDKLAP 104
           A+  E  VK +C +CHGDQLQG VGP+LQ+ GGK   EEI  +++KG+G MP     L P
Sbjct: 47  ASKPEDIVKQSCTSCHGDQLQGAVGPNLQKIGGKLSKEEIQEVISKGKGNMPP---NLVP 103

Query: 105 -EEIANVAMWLAEKK 118
            ++ A VA WL++KK
Sbjct: 104 ADQAAKVADWLSKKK 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 664,574,402
Number of extensions: 23105612
Number of successful extensions: 38753
Number of sequences better than 1.0e-05: 203
Number of HSP's gapped: 38919
Number of HSP's successfully gapped: 203
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)