BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0009.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK97.1 B3KK97_9BACI MotA/TolQ/ExbB proton channel 404 e-111 B1DKA3.1 B1DKA3_9BACL MotA/TolQ/ExbB proton channel 370 e-101 A4J1F0.1 A4J1F0_DESRM MotA/TolQ/ExbB proton channel 306 7e-82 C0Z4W9.1 C0Z4W9_BREBN Chemotaxis MotA protein 306 1e-81 Q251F9.1 Q251F9_DESHY Putative uncharacterized protein 305 3e-81 >B3KK97.1 B3KK97_9BACI MotA/TolQ/ExbB proton channel Length = 266 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/247 (78%), Positives = 226/247 (91%) Query: 1 MFLKGAPLHALNAPAAYVIILLGTAASIFMAFPFSEVKKIPKLFKLIFVKQKMVSKSELI 60 M LKGA L AL PAAY+IIL GTAA++F+ FP SE+KKIPKL K+ FVKQ ++ K+++I Sbjct: 20 MILKGASLLALYNPAAYLIILGGTAATLFIGFPLSELKKIPKLVKMTFVKQNLMDKTDMI 79 Query: 61 TMFMEWASITRREGLLALESKVDEIEDNFLRNGMRMIIDGNDQEFVRDVLMEDIHATEDR 120 +FMEWASITRREGLLALE+KVDEI+D+FLRNGMRMIIDGNDQEFVRDVLMEDI+ATE+R Sbjct: 80 KLFMEWASITRREGLLALETKVDEIDDSFLRNGMRMIIDGNDQEFVRDVLMEDINATEER 139 Query: 121 HKAGALIFSQAGMYAPTLGVLGAVIGLIAALSDMSAMEKLAHAIGAAFIATLVGIFTGYV 180 H++G+LIFSQAGMYAP+LGVLGAVIGLIAALS M M +LAHAIGAAFIATL+GIFTGYV Sbjct: 140 HRSGSLIFSQAGMYAPSLGVLGAVIGLIAALSHMEDMGELAHAIGAAFIATLLGIFTGYV 199 Query: 181 LWHPISNKLKRLSKREIEVRLMMVEGLLSIQSGVSTIAINQKLSVFLTPLERAKLSDKEG 240 + HPI+NKLKRLSKRE+E+RLMMVEGLLSIQSGVSTIAINQKLSVFLTP ERA+LS++E Sbjct: 200 ICHPIANKLKRLSKREVEIRLMMVEGLLSIQSGVSTIAINQKLSVFLTPSERAELSEREA 259 Query: 241 ASSEQKD 247 +SEQKD Sbjct: 260 GASEQKD 266 >B1DKA3.1 B1DKA3_9BACL MotA/TolQ/ExbB proton channel Length = 265 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/245 (72%), Positives = 209/245 (85%) Query: 1 MFLKGAPLHALNAPAAYVIILLGTAASIFMAFPFSEVKKIPKLFKLIFVKQKMVSKSELI 60 M LKGA L L PAAY+II+LGT AS+ +AFP SE+ K+ KLFK+ F +Q ++ + +LI Sbjct: 20 MTLKGAALSNLLNPAAYMIIVLGTIASVMIAFPMSELSKVGKLFKIAFKEQPLMPREQLI 79 Query: 61 TMFMEWASITRREGLLALESKVDEIEDNFLRNGMRMIIDGNDQEFVRDVLMEDIHATEDR 120 FMEWASITRREGLLALE+KV++IED FLRNGMRMIIDGNDQ+FVRDVL+EDI ATEDR Sbjct: 80 ESFMEWASITRREGLLALEAKVEDIEDTFLRNGMRMIIDGNDQDFVRDVLLEDISATEDR 139 Query: 121 HKAGALIFSQAGMYAPTLGVLGAVIGLIAALSDMSAMEKLAHAIGAAFIATLVGIFTGYV 180 HKAGALIF+QAG YAPTLGVLGAV+GLI AL M ME LAH+I AFIATL+GIFTGYV Sbjct: 140 HKAGALIFTQAGTYAPTLGVLGAVVGLIGALGHMDDMETLAHSIAGAFIATLLGIFTGYV 199 Query: 181 LWHPISNKLKRLSKREIEVRLMMVEGLLSIQSGVSTIAINQKLSVFLTPLERAKLSDKEG 240 LWHP++NKLKRLSK+E+++RLMMVEGLLSIQSGVSTIAINQKLSVFLTP ER + +KE Sbjct: 200 LWHPLANKLKRLSKKEVQLRLMMVEGLLSIQSGVSTIAINQKLSVFLTPTERVAMREKEA 259 Query: 241 ASSEQ 245 + E+ Sbjct: 260 GAGEK 264 >A4J1F0.1 A4J1F0_DESRM MotA/TolQ/ExbB proton channel Length = 268 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 148/246 (60%), Positives = 203/246 (82%), Gaps = 2/246 (0%) Query: 1 MFLKGAPLHALNAPAAYVIILLGTAASIFMAFPFSEVKKIPKLFKLIFVKQKMVSKSELI 60 M LKGA L +L PAA +II +GTAAS+F+AFP SE+KKIP+L K+ + K+++K E++ Sbjct: 20 MVLKGAHLSSLWNPAAIMIIFVGTAASLFIAFPMSELKKIPRLLKITLQEPKLMAKREVV 79 Query: 61 TMFMEWASITRREGLLALESKVDEIEDNFLRNGMRMIIDGNDQEFVRDVLMEDIHATEDR 120 F+ AS RREGLL+LES+++ I+D +LR GM+MIIDG+D EFV+ V+ E+I+ATE+R Sbjct: 80 NTFVALASTARREGLLSLESQLESIDDPYLRGGMQMIIDGSDAEFVKFVMEEEIYATEER 139 Query: 121 HKAGALIFSQAGMYAPTLGVLGAVIGLIAALSDMSAMEKLAHAIGAAFIATLVGIFTGYV 180 H++GALIF+QAG YAPTLGVLGAV+GLIAAL ++S +EKL H+I AAF+ATL+GIF+GYV Sbjct: 140 HRSGALIFTQAGTYAPTLGVLGAVVGLIAALGNLSDIEKLGHSIAAAFVATLLGIFSGYV 199 Query: 181 LWHPISNKLKRLSKREIEVRLMMVEGLLSIQSGVSTIAINQKLSVFLTPLERAKLSDKEG 240 LWHPI+NKLKR+SK+E+E++ M+VEG+L+IQ+G S IAI Q+L V+L+P ER+ S KE Sbjct: 200 LWHPIANKLKRISKKEMEIKQMIVEGVLAIQTGRSPIAIEQQLLVYLSPSERS--SSKEE 257 Query: 241 ASSEQK 246 A ++ K Sbjct: 258 AENDGK 263 >C0Z4W9.1 C0Z4W9_BREBN Chemotaxis MotA protein Length = 271 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 155/234 (66%), Positives = 189/234 (80%), Gaps = 2/234 (0%) Query: 1 MFLKGA-PLHALNAPAAYVIILLGTAASIFMAFPFSEVKKIPKLFKLIFVKQKMVSKSEL 59 M LK A P+ LN PAA +II++GT A++F AFP SE+K+IP LFK+IF +QK+ K EL Sbjct: 20 MILKHASPMSLLN-PAAIMIIIVGTIAALFNAFPMSEMKRIPALFKIIFKEQKLPEKREL 78 Query: 60 ITMFMEWASITRREGLLALESKVDEIEDNFLRNGMRMIIDGNDQEFVRDVLMEDIHATED 119 I FM WASI RREGLLALE+ DEIED FLRNGM+MIIDG + +FVRDVL E+IHA E+ Sbjct: 79 IGQFMNWASIARREGLLALENTSDEIEDPFLRNGMKMIIDGGEPDFVRDVLNEEIHAIEE 138 Query: 120 RHKAGALIFSQAGMYAPTLGVLGAVIGLIAALSDMSAMEKLAHAIGAAFIATLVGIFTGY 179 RH+AGAL+FSQAG YAPTLGVLGAV+GLIAAL ++S ++ L +I AAF+ATL+GIFTGY Sbjct: 139 RHQAGALVFSQAGSYAPTLGVLGAVVGLIAALGNLSDIDALGISIAAAFVATLLGIFTGY 198 Query: 180 VLWHPISNKLKRLSKREIEVRLMMVEGLLSIQSGVSTIAINQKLSVFLTPLERA 233 VLWHP + KLKR SK EIE++ +MVEGLLSIQ+GVS AI QKL V++ ERA Sbjct: 199 VLWHPFATKLKRKSKAEIEIKKIMVEGLLSIQAGVSPTAIEQKLLVYIPYQERA 252 >Q251F9.1 Q251F9_DESHY Putative uncharacterized protein Length = 263 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 139/240 (57%), Positives = 194/240 (80%) Query: 1 MFLKGAPLHALNAPAAYVIILLGTAASIFMAFPFSEVKKIPKLFKLIFVKQKMVSKSELI 60 M LKGA L AL PAA +II++GT A+IF+ FP ++K++PKLFK++F KQ+++SK EL+ Sbjct: 20 MILKGASLTALINPAAILIIIVGTIATIFIGFPMEDLKRVPKLFKILFTKQQLISKKELV 79 Query: 61 TMFMEWASITRREGLLALESKVDEIEDNFLRNGMRMIIDGNDQEFVRDVLMEDIHATEDR 120 F EW +++RREG+L+LE++++EI D+FL+ GM M IDGND EF+RDVL EDI A E+R Sbjct: 80 KQFAEWTTVSRREGILSLENRLEEINDDFLKKGMGMAIDGNDAEFIRDVLFEDISAMEER 139 Query: 121 HKAGALIFSQAGMYAPTLGVLGAVIGLIAALSDMSAMEKLAHAIGAAFIATLVGIFTGYV 180 H+ GAL+F+Q G YAPTLGVLGAV+GLI+ALS+++ +E L H I AAF+ATL+GIFTGYV Sbjct: 140 HRDGALVFTQMGTYAPTLGVLGAVVGLISALSNLNEVEALGHLISAAFVATLLGIFTGYV 199 Query: 181 LWHPISNKLKRLSKREIEVRLMMVEGLLSIQSGVSTIAINQKLSVFLTPLERAKLSDKEG 240 LWHP++NKLK S+RE E++ MM+EG+LSIQ+G + AI+ KL +L+ ER +L+++ G Sbjct: 200 LWHPMANKLKLFSRREAEIKRMMLEGILSIQAGDNVNAIHNKLFAYLSAAERRELTEEMG 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,277,899,653 Number of extensions: 48284461 Number of successful extensions: 162333 Number of sequences better than 1.0e-05: 976 Number of HSP's gapped: 161559 Number of HSP's successfully gapped: 976 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)