BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0008.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK96.1 B3KK96_9BACI OmpA/MotB domain protein 324 4e-87 B1DKA4.1 B1DKA4_9BACL OmpA/MotB domain protein 268 5e-70 Q2B139.1 Q2B139_9BACI Flagellar motor protein 228 5e-58 A4J1E9.1 A4J1E9_DESRM OmpA/MotB domain protein 224 6e-57 A7GTH4.1 A7GTH4_BACCN OmpA/MotB domain protein 222 3e-56 >B3KK96.1 B3KK96_9BACI OmpA/MotB domain protein Length = 268 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 170/266 (63%), Positives = 198/266 (74%) Query: 1 VSKKTRHEEHEEHADESWLLPYSDLMTLLVALFLVMYAMSATDAKKFEEMAQAFSSALNG 60 +SKKTRHE HEEHADESWLLPY+DL+TLL+ALFLV+YAMSATDA+KF+EM++AFS AL G Sbjct: 1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSVALTG 60 Query: 61 GSGVLEYRSDAPTNTQLDQGKEDKMNSVVAPNTGKADIAXXXXXXXXXXXXXXXXFDQYI 120 G+GVL+Y P++T + V T A D YI Sbjct: 61 GTGVLDYSKTEPSDTPPNINDHKATTPSVPATTPDQRRAELMRQEQEDLEKLKKQLDNYI 120 Query: 121 KNNGLTDLLSTKLNQSQLTITISDNALFSSGQAVVKDESRQLAKSISTMLQQFPNYEVLV 180 KNNGLT LSTKLN SQL ITI DNALF SG+AVVK E+R+LAK+IS ML +FP+YE++V Sbjct: 121 KNNGLTSELSTKLNHSQLVITIRDNALFPSGEAVVKPEARKLAKAISQMLHKFPDYEIIV 180 Query: 181 EGHTDNIPISNSEYPSNWDLSVARALQFMKILLLNPYLDPVKFSPIGYGEYHPVADNSTA 240 GHTDN+PISNS+YPSNWDLS RALQFMKILL N LDP +F PIGYGEYHP+ADN+TA Sbjct: 181 SGHTDNVPISNSKYPSNWDLSSDRALQFMKILLTNSELDPKRFMPIGYGEYHPIADNNTA 240 Query: 241 AGRAKNRRVEVSILRKYQDVTETTPV 266 GRAKNRRVEVSI+RKYQD T V Sbjct: 241 VGRAKNRRVEVSIIRKYQDSATFTSV 266 >B1DKA4.1 B1DKA4_9BACL OmpA/MotB domain protein Length = 272 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 140/272 (51%), Positives = 185/272 (68%), Gaps = 9/272 (3%) Query: 3 KKTRHEEHEEHADESWLLPYSDLMTLLVALFLVMYAMSATDAKKFEEMAQAFSSALNGGS 62 KK +H++H+EH DESWL+PY+DL+TLL+ALF+V+YA S+TDA+KFE M++AFS+A N G+ Sbjct: 2 KKRKHDDHDEHIDESWLIPYADLLTLLLALFIVLYAASSTDARKFERMSEAFSAAFNSGA 61 Query: 63 GVLE----YRSDAPTNTQLDQGKEDKMNSVVAPNTGKADIAXXXXXXXXXXXXXXXXFDQ 118 G+++ +S Q+D GK+ S ++++ DQ Sbjct: 62 GIMDNPSVIKSGEQPQQQIDDGKK---TSKDRHEDTESNLQELIKKEQEDLEKLKKQLDQ 118 Query: 119 YIKNNGLTDLLSTKLNQSQLTITISDNALFSSGQAVVKDESRQLAKSISTMLQQFPNYEV 178 YIK NGL+ L TKLNQSQL ITISDNALF+SG +K ES++LA +IS ML+ + YE+ Sbjct: 119 YIKKNGLSSELETKLNQSQLMITISDNALFASGSDALKTESKELAANISKMLEPYTGYEI 178 Query: 179 LVEGHTDNIPISNSEYPSNWDLSVARALQFMKILLLNPYLDPVKFSPIGYGEYHPVADNS 238 +V GHTD+ PI + SNWDLS +RA++FM +LL N L P +FS IGYGEY PVA N Sbjct: 179 VVSGHTDDQPIRTQNFKSNWDLSSSRAIRFMDVLLQNSKLKPERFSAIGYGEYRPVASND 238 Query: 239 TAAGRAKNRRVEVSILRKYQDV--TETTPVTP 268 T AGRAKNRRVEVSI+RKY D T+ P TP Sbjct: 239 TTAGRAKNRRVEVSIIRKYVDSGNTQQIPATP 270 >Q2B139.1 Q2B139_9BACI Flagellar motor protein Length = 269 Score = 228 bits (580), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 116/266 (43%), Positives = 160/266 (60%), Gaps = 12/266 (4%) Query: 1 VSKKTRHEEHEEHADESWLLPYSDLMTLLVALFLVMYAMSATDAKKFEEMAQAFSSALNG 60 +SK+ + E HEEH DESWL+PY+D++TLL+ALF+V++AMS+ DA+KFE +++AF+ A NG Sbjct: 1 MSKRKKKEHHEEHVDESWLIPYADILTLLLALFIVLFAMSSVDARKFEALSKAFNDAFNG 60 Query: 61 GSGVLEYRSDAPTNT-----QLDQGKEDKMNSVVAPNT---GKADIAXXXXXXXXXXXXX 112 G+G ++ S P + D +D++ A T G+ D+ Sbjct: 61 GTGFFDFPSPMPDGAMQSADKADTENKDEVEKASAAGTLEEGQNDMEAEGKIQKLTDKQE 120 Query: 113 XXXFDQ----YIKNNGLTDLLSTKLNQSQLTITISDNALFSSGQAVVKDESRQLAKSIST 168 ++ YI+NNGLTD L T L L +TI DN F+SG A V+ +A I Sbjct: 121 LKEVEEKVKTYIQNNGLTDKLETSLTDEGLLVTIRDNVFFASGSAEVRSGELTIADEIGE 180 Query: 169 MLQQFPNYEVLVEGHTDNIPISNSEYPSNWDLSVARALQFMKILLLNPYLDPVKFSPIGY 228 +L P +++ GHTDN+PI NSE+ SNW+LSV RA+ FMKILL N LD FS G+ Sbjct: 181 LLVMDPPRNIIISGHTDNMPIKNSEFESNWELSVMRAVNFMKILLHNKDLDARAFSAKGF 240 Query: 229 GEYHPVADNSTAAGRAKNRRVEVSIL 254 GE+ P A N T GR KNRRVE+ IL Sbjct: 241 GEFQPAASNDTKEGRDKNRRVEILIL 266 >A4J1E9.1 A4J1E9_DESRM OmpA/MotB domain protein Length = 236 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 164/250 (65%), Gaps = 21/250 (8%) Query: 7 HEEHEEHADESWLLPYSDLMTLLVALFLVMYAMSATDAKKFEEMAQAFSSALNGGSGVLE 66 E+HEEH DESWL+PY+DL+TLL+ALF+V++A S D +KF M ++ ++ALN G+G++E Sbjct: 5 REQHEEHIDESWLIPYADLLTLLLALFIVLFASSTIDNQKFNAMKESLNAALNSGAGIME 64 Query: 67 YRSDAPTNTQLDQGKEDKMNSVVAPNTGKADIAXXXXXXXXXXXXXXXXFDQYIKNNGLT 126 +S + QL E K ++VV K + DQYIK N +T Sbjct: 65 SKS---LSDQLIDKTEVKTDTVVELQELKKQL------------------DQYIKENNMT 103 Query: 127 DLLSTKLNQSQLTITISDNALFSSGQAVVKDESRQLAKSISTMLQQFPNYEVLVEGHTDN 186 + T + + LT+TI D ALF SG AVVK +SR++ K++ ++LQQ+P +EVLV GHTDN Sbjct: 104 TEVETNIINNHLTLTIRDRALFDSGSAVVKPQSRKIIKAMGSILQQYPKFEVLVAGHTDN 163 Query: 187 IPISNSEYPSNWDLSVARALQFMKILLLNPYLDPVKFSPIGYGEYHPVADNSTAAGRAKN 246 PI N+ + SNWDLS RAL MKI+L N LDP + IGYGEY P+A+N+T GRAKN Sbjct: 164 QPIYNNTFESNWDLSSKRALNCMKIMLTNKNLDPRRLVAIGYGEYRPIAENTTTEGRAKN 223 Query: 247 RRVEVSILRK 256 RRVEV I +K Sbjct: 224 RRVEVIINQK 233 >A7GTH4.1 A7GTH4_BACCN OmpA/MotB domain protein Length = 265 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/251 (47%), Positives = 157/251 (62%), Gaps = 12/251 (4%) Query: 10 HEEHADESWLLPYSDLMTLLVALFLVMYAMSATDAKKFEEMAQAFSSALNGGSGVLEYRS 69 HEEH DE+WL+PYSD++TLL ALF+V++AMS+ DA KF++MA +F S L GG+G E+ S Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMALSFRSELAGGTGNKEFLS 73 Query: 70 DAPTNTQLDQGKED-KMNSVVAPN-----TGKADIAXXXXXXXXXXXXXXXXFDQYIKNN 123 D Q + KE+ +S+ A N T KA+ A DQYI+ Sbjct: 74 D-----QKPKKKEELSTDSLEAENIKKQATEKAE-AEVKQREMNELKAVQKSIDQYIEER 127 Query: 124 GLTDLLSTKLNQSQLTITISDNALFSSGQAVVKDESRQLAKSISTMLQQFPNYEVLVEGH 183 L+ TKL + L ITI +N LF SG+A VK ES +A +S +L E+ V GH Sbjct: 128 QLSSSFKTKLTEQGLMITILENVLFDSGKADVKPESLNIANEMSHLLLSAAPREITVSGH 187 Query: 184 TDNIPISNSEYPSNWDLSVARALQFMKILLLNPYLDPVKFSPIGYGEYHPVADNSTAAGR 243 TDN+PI+NS++ SNW+LS RA+ FM++LL N LDP KFS GYGEY P N T+ G+ Sbjct: 188 TDNVPITNSQFSSNWELSTQRAVNFMQVLLQNKQLDPAKFSATGYGEYRPATSNDTSEGK 247 Query: 244 AKNRRVEVSIL 254 AKNRRVEV IL Sbjct: 248 AKNRRVEVFIL 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.127 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,426,494,820 Number of extensions: 50898368 Number of successful extensions: 106186 Number of sequences better than 1.0e-05: 2261 Number of HSP's gapped: 105128 Number of HSP's successfully gapped: 2292 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)