BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0006.p (757 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK94.1 B3KK94_9BACI Sensor protein EC=2.7.13.3 840 0.0 B1DD12.1 B1DD12_9BACL Sensor protein EC=2.7.13.3 548 e-154 B1DKA7.1 B1DKA7_9BACL Sensor protein EC=2.7.13.3 451 e-124 C1P7K9.1 C1P7K9_BACCO PAS/PAC sensor signal transduction histidi... 246 6e-63 C1PVS6.1 C1PVS6_ALIAC PAS domain S-box protein 240 4e-61 >B3KK94.1 B3KK94_9BACI Sensor protein EC=2.7.13.3 Length = 764 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/737 (57%), Positives = 548/737 (74%), Gaps = 14/737 (1%) Query: 17 RSNLRNESVKNMKMAARQIAVSVEQSSYSSNYVQHQIAQNLRLTAILASKELDPDIKNVK 76 + NL+ +S M MAA QIA++V+Q+ +SS YV + L++ A+ A+K LDPDI N+ Sbjct: 31 QENLQQDSETKMVMAATQIAITVQQTGFSSAYVDNIFGDMLKVAAVNAAKALDPDINNIT 90 Query: 77 DAQLVALAHKLGVSNISLLVKTEDDVVVARSSDPGEIGLSTKGMGYWYVAFLELFA-GQE 135 + QL L+ ++GV++ISLLV+T DD+VVARSS EIGLSTK GYW+ AFLELF G+ Sbjct: 91 NQQLAELSKEIGVTHISLLVRTNDDIVVARSSSQDEIGLSTKNWGYWHTAFLELFQHGKV 150 Query: 136 VSVEQGQSFEHFWSGPFEYSTSNPKFIEKWGYYYDQKSNYIIDPYIRSTAVSDYVKIMNP 195 VSV +GQ EHFWSGPFE+STSNP+FI+KWGYYYD K NYIIDPYIR++ + D+VKI +P Sbjct: 151 VSVTEGQRAEHFWSGPFEFSTSNPEFIDKWGYYYDGKRNYIIDPYIRNSNIKDFVKITSP 210 Query: 196 DEIVRQSKEVNPGILEVTGINPKTFGVSTMLPDGSDPTNQKLRSRAIKYGTYIYGNVEED 255 + +V ++ + NP ILEVTGINP+TFG M DG+D + KLR+R I +GTY YG++++D Sbjct: 211 NTVVEETLKSNPRILEVTGINPETFGNEYMREDGTDDVHHKLRNRPITFGTYNYGSLDQD 270 Query: 256 KTAVMEALSSGSPLTLDTQALGKRVLKTFIPITQPGVEDYVISVVMDYSVISSVIKEQLI 315 AV A+S+ + + K+VLK+FIPI VISVVMDY ISSV++EQ+I Sbjct: 271 TEAVQRAVSTSDNVVFVSTINNKKVLKSFIPILSENKPTSVISVVMDYEAISSVMREQMI 330 Query: 316 NNVTTSIILLVVFFAASYILAGIVTRPIQHILAKVNDVARGKFEPPLKVDSRDELGQLAH 375 + V S++LL + SYI+AG T+PIQ IL VNDV+ G F+ L+V SRDELGQLA Sbjct: 331 SLVAISLVLLEIVIFGSYIVAGYFTKPIQAILGTVNDVSDGHFDRRLEVSSRDELGQLAG 390 Query: 376 RINAMTSHLLQHTNRLGQTLEENRAVKERLESVINGTSDAIHTMDMDGRILSTNRAFEEL 435 RINAMT +L +T++L Q ++EN++VKE LESVIN T+DAIHT D R++S N+AFE+L Sbjct: 391 RINAMTRNLGTYTSQLKQMVDENQSVKEYLESVINQTADAIHTTDTYERVISVNKAFEQL 450 Query: 436 YGWSADDVSDKTPYLVPATAQKQEETRLRELKNGAVLPPLETIRLKRDGXXXXXXXXXXX 495 YGW A +V + LVP +++E+ R+R L+ G LPP+ET+RL++DG Sbjct: 451 YGWKAHEVVGRKLALVPPAKEEEEKERIRRLRAGERLPPVETVRLRKDGSTIEVSISTSL 510 Query: 496 IRDEDGNPQSFVHVSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQ 555 +RDE+G S + VSRD+TERNR+EELLRRSEKL TVGQLAAGVAHEIRNPLTTLRGFLQ Sbjct: 511 VRDENGEVTSMISVSRDVTERNRIEELLRRSEKLNTVGQLAAGVAHEIRNPLTTLRGFLQ 570 Query: 556 LQQEKQILVPLHIELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQ 615 LQQ+ P HI+LMLSEL+RIN+IVSEFLILAKPQA++FQ RDV +I+GDVIS LDSQ Sbjct: 571 LQQQTHKANPDHIDLMLSELDRINLIVSEFLILAKPQAINFQERDVGVIMGDVISFLDSQ 630 Query: 616 AHLFGIEFEARFSQQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIIL-------EQQI 668 AHL+GIEF+ F ++P VHCEENQLKQVFIN++KNAIEAMP+GG I + EQ Sbjct: 631 AHLYGIEFKLDFIEEPTFVHCEENQLKQVFINLLKNAIEAMPEGGNIWIRLTRPQPEQIQ 690 Query: 669 IDGTVVIVISDEGEGVPEEILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEY 728 ID I DEG+G+PE+++P LGEPF TNKETGTGLGLMVSQRIIQ H+G++EI SE Sbjct: 691 ID------IRDEGQGIPEDMMPHLGEPFITNKETGTGLGLMVSQRIIQGHRGTMEIESEV 744 Query: 729 GSGAQVTIKLPEAGEHT 745 G G +V+I LP + T Sbjct: 745 GVGTRVSIVLPAVPQKT 761 >B1DD12.1 B1DD12_9BACL Sensor protein EC=2.7.13.3 Length = 753 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 289/725 (39%), Positives = 447/725 (61%), Gaps = 8/725 (1%) Query: 18 SNLRNESVKNMKMAARQIAVSVEQSSYSSNYVQHQIAQNLRLTAILASKELDPDIKNVKD 77 S L+ + + M A+QI +++ + S ++ + + LR+ +I A +LDPDI N+ + Sbjct: 32 SQLKKGAEQQMIGIAKQIGETLDSAQRSKQLIEDSVGEKLRIASISAQDKLDPDINNISN 91 Query: 78 AQLVALAHKLGVSNISLLVKTEDDVVVARSSDPGEIGLSTKGMGYWYVAFLELFAGQEVS 137 QLV L+ +LGV I+L K DD+ +SS+ IG S+K +GYWY AF +LF ++V Sbjct: 92 EQLVRLSQELGVDYITLWAKNGDDITAQKSSNSKAIGASSKALGYWYTAFSQLFEMRQVI 151 Query: 138 VEQGQSFEHFWSGPFEYSTSNPKFIEKWGYYYDQKSNYIIDPYIRSTAVSDYVKIMNPDE 197 + QGQ HFWS P S+ + K G+YY+ K+NY+I+P + + A + + + D Sbjct: 152 IPQGQKLNHFWSPPITIIPSDLNDVNKLGFYYNDKTNYLINPIVHAGAFYNLENLKSSDA 211 Query: 198 IVRQSKEVNPGILEVTGINPKTFGVSTMLPDGSDPTNQKLRSRAIKYGTYIYGNVEEDKT 257 I +Q NP ILE++G +P + ++ KL ++++ +G Y Y ++ D T Sbjct: 212 IAQQIIADNPSILEISGFSPAFYNDPQVVSMKEKVQPYKLDNQSMIFGRYNYIDLH-DYT 270 Query: 258 AVMEALSSGSPLTLDTQALGKRVLKTFIPITQPGVEDYVISVVMDYSVISSVIKEQLINN 317 +M+A +G +T TQ G +VLK+FIP++ G VI V ++Y+ I + QL+ Sbjct: 271 NLMKADQTGGIVTTKTQIHGHKVLKSFIPMS--GTSKSVIVVNINYAAIKEPLYHQLLIQ 328 Query: 318 VTTSIILLVVFFAASYILAGIVTRPIQHILAKVNDVARGKFEPPLKVDSRDELGQLAHRI 377 + S+ L+ A S ++AG + R ++ I+ +V+D++RG F +++DS +E G LA ++ Sbjct: 329 ILISLGLIGAAIACSSLIAGFMIRTLEMIMQRVHDISRGNFGEQIEIDSNNEFGALASQV 388 Query: 378 NAMTSHLLQHTNRLGQTLEENRAVKERLESVINGTSDAIHTMDMDGRILSTNRAFEELYG 437 NAM+S+L + +L +E K+ LES IN TSDAIH +D++GR + N+AFE ++G Sbjct: 389 NAMSSNLHSYQTQLTAAAKELLHTKQYLESFINNTSDAIHVVDLEGRTIDANKAFETMFG 448 Query: 438 WSADDVS-DKTPYLVPAT-AQKQEETRLRELKNGAVLPPLETIRLKRDGXXXXXXXXXXX 495 W+ + S K P P A+ E+ ++ + NG + ET+ +DG Sbjct: 449 WTLAEASGQKLPMFTPEILAELAEKGKI--ILNGGQVTDYETVLYSKDGLPVEVSITLSG 506 Query: 496 IRDEDGNPQSFVHVSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQ 555 IRDE G ++ ++RD+ ER R E++LRRSEKL+ VGQLAAGVAHE+RNPLTTLRGF+Q Sbjct: 507 IRDERGYFVAYASIARDIAERKRTEDILRRSEKLSVVGQLAAGVAHEVRNPLTTLRGFVQ 566 Query: 556 LQQEKQILVPLHIELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQ 615 L Q+ L ++ +MLSEL+RIN+IVSEFL+ AKPQA +Q D+ I+ D+I LLDS+ Sbjct: 567 LMQKDSRLDKSYLNIMLSELDRINLIVSEFLVFAKPQADRYQEADLYAIMNDIIVLLDSE 626 Query: 616 AHLFGIEFEARFSQQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILE-QQIIDGTVV 674 A++ ++ ++ CE NQLKQV +N++KN +EAMPDGG + LE + + ++ Sbjct: 627 ANIHNVQMITCLEPGVPSLRCESNQLKQVLVNVMKNGMEAMPDGGELTLELARESEQNIL 686 Query: 675 IVISDEGEGVPEEILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQV 734 I I D+G G+PEE L +LGEPFFT K G GLGLM+SQ+IIQ HKG+++ S+ G G V Sbjct: 687 IRIKDQGVGIPEEDLARLGEPFFTRKAEGNGLGLMISQQIIQHHKGTIQYSSKPGEGTCV 746 Query: 735 TIKLP 739 I++P Sbjct: 747 EIRIP 751 >B1DKA7.1 B1DKA7_9BACL Sensor protein EC=2.7.13.3 Length = 624 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 241/549 (43%), Positives = 339/549 (61%), Gaps = 17/549 (3%) Query: 195 PDEIVRQSKEVNPGILEVTGINPKTFGVSTMLPDGSDPTNQKLRSRAIKYGTYIYGNVEE 254 P+E+ K++ P + EVT P + G+ + + GTY + + + Sbjct: 74 PNEMQVLLKKLYPELEEVTVFRPDSTGI--------------MSEDKVLLGTYTFRDEAK 119 Query: 255 DKTAVMEALSSGSPLTLDTQALGKRVLKTFIPITQPGVEDYVISVVMDYSVISSVIKEQL 314 D +A G + + GK +K++ + + YVI +V D + ++ + Sbjct: 120 DMAYAAQAAEKGFQVR-EVNLNGKEYIKSYY--SDASLAPYVIGMVYDCEEYNQIMSMKR 176 Query: 315 INNVTTSIILLVVFFAASYILAGIVTRPIQHILAKVNDVARGKFEPPLKVDSRDELGQLA 374 ++ + + I+L+ +SY+LAG + RP+ IL KVN+V+ G+F+ +KV +DE G LA Sbjct: 177 MDAIAYAGIILLFVLISSYLLAGFMLRPLNAILWKVNEVSLGRFQTAIKVRGKDEFGLLA 236 Query: 375 HRINAMTSHLLQHTNRLGQTLEENRAVKERLESVINGTSDAIHTMDMDGRILSTNRAFEE 434 +INAM+ +L + +L Q E+NR +KE L+S I+ TSDAIH +D+ G+ + N AFE+ Sbjct: 237 LKINAMSQNLSIYMEKLRQAFEDNRQMKEYLQSFIDHTSDAIHVVDLQGKFIQVNTAFEQ 296 Query: 435 LYGWSADDVSDKTPYLVPATAQKQEETRLRELKNGAVLPPLETIRLKRDGXXXXXXXXXX 494 L+G+++++V LVP T + + + L+ G VLP ETIRL + G Sbjct: 297 LFGYTSEEVFGAEIELVPDTHRGEMRLIINSLQEGKVLPAQETIRLTKSGEIIPVSVTIS 356 Query: 495 XIRDEDGNPQSFVHVSRDMTERNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFL 554 IRD +G Q+F ++RDM RNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFL Sbjct: 357 PIRDTEGVIQAFASITRDMRSRNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFL 416 Query: 555 QLQQEKQILVPLHIELMLSELERINMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDS 614 QLQQ + H LMLSEL+RIN+IV EFLILAKPQA F +DVR + V+SL+DS Sbjct: 417 QLQQHTGKMNLEHTGLMLSELDRINLIVGEFLILAKPQATRFATKDVRDVFRSVLSLIDS 476 Query: 615 QAHLFGIEFEARFSQQPATVHCEENQLKQVFINIVKNAIEAMPDGGTIILEQQIIDGTVV 674 + HL + F F++ V CEENQLKQVFIN++KN IEAMP GG I + + Sbjct: 477 EGHLHNVAFSTSFTESACLVSCEENQLKQVFINLLKNGIEAMPSGGRIHTHIASKNDQIT 536 Query: 675 IVISDEGEGVPEEILPKLGEPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQV 734 I I+DEG G+PE+++PK+G PFFT KE+GTGLG+M+SQRII SH+G +EI S+ G + Sbjct: 537 ISITDEGIGIPEDMIPKIGNPFFTGKESGTGLGMMISQRIIHSHQGLMEIKSQVNVGTTI 596 Query: 735 TIKLPEAGE 743 I LP E Sbjct: 597 IITLPALKE 605 >C1P7K9.1 C1P7K9_BACCO PAS/PAC sensor signal transduction histidine kinase Length = 534 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 161/413 (38%), Positives = 230/413 (55%), Gaps = 51/413 (12%) Query: 366 SRDEL------GQLAH------RINAMTSHLLQHTN-----RLGQTLEENRAVKERLESV 408 +R+EL GQL H I+A H+ N ++ QTL R +ER V Sbjct: 119 AREELLFKMPNGQLKHLEFTSRYISAENYHMTIFRNVSSRYKMEQTL---RDSEERFRKV 175 Query: 409 INGTSDAIHTMDMDGRILSTNRAFEELYGWSADD-VSDKTPYLVPATAQKQEETRLRELK 467 G+ D + + D +I+ N A + S +D + + L+ +K ++ LR L Sbjct: 176 FEGSIDGMVLWNWDLKIVDINPAAANYFDCSREDAIGKRIQNLLLTNDEKMQKDFLRHL- 234 Query: 468 NGAVLPPLETIRLKRDGXXXXXXXXXXXIRDE------DGNPQSFVHVS--RDMTERNRM 519 +LK +G + GN S ++++ RD+TER M Sbjct: 235 ----------FQLKENGTADYLFTASKANETKYYEITSKGNLTSNMNLTVIRDITERRAM 284 Query: 520 EELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQE--KQILVPLHIELMLSELER 577 +E LR+S+ L VG+LAAG+AHEIRNP+T L+GF+QL Q K+ L+ ++ SEL R Sbjct: 285 QEQLRKSDTLNIVGELAAGIAHEIRNPMTALKGFIQLLQNSMKEEEHSLYFNVITSELAR 344 Query: 578 INMIVSEFLILAKPQAVHFQLRDVRLILGDVISLLDSQAHLFGIEFEARFSQQPATVHCE 637 I I+++FL+LAKPQA+ FQ DVR I+ D I LL++QA + I+ F + V+CE Sbjct: 345 IEAIITDFLVLAKPQAIQFQNHDVRKIMRDTIGLLNAQALMHNIQISCHFDEGLPDVYCE 404 Query: 638 ENQLKQVFINIVKNAIEAMPDGG----TIILEQQIIDGTVVIVISDEGEGVPEEILPKLG 693 NQ+KQVFINI+KNAIE MPDGG I E++ G V I DEGEG+P++ + KLG Sbjct: 405 GNQIKQVFINIIKNAIEVMPDGGKIDIAICYEKE--KGLVHTSIRDEGEGIPDDKIEKLG 462 Query: 694 EPFFTNKETGTGLGLMVSQRIIQSHKGSLEIHSEYGSGAQVTIKLP---EAGE 743 EPF+T KE GTGLGLM+S +II+ HKG +++ S+ G I LP EAG+ Sbjct: 463 EPFYTTKERGTGLGLMISYKIIKEHKGFIQVQSKVREGTTFHIFLPVHQEAGD 515 >C1PVS6.1 C1PVS6_ALIAC PAS domain S-box protein Length = 1215 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/263 (49%), Positives = 174/263 (66%), Gaps = 9/263 (3%) Query: 481 KRDGXXXXXXXXXXXIRDEDGNPQSFVHVSRDMTERNRMEELLRRSEKLTTVGQLAAGVA 540 ++DG I DE G ++ V+ D+TE EELLR+SE L+ VG+LAAG+A Sbjct: 936 RKDGTLYWEQLSIVPILDETGRIIHYLKVAEDVTEFRYTEELLRKSEMLSAVGELAAGIA 995 Query: 541 HEIRNPLTTLRGFLQLQQEKQILVPLH----IELMLSELERINMIVSEFLILAKPQAVHF 596 HEIRNPLT L+GF +L IL H +E+M EL+RI IV+E L+L+KPQAVH Sbjct: 996 HEIRNPLTALKGFTKL-----ILSGSHSDSYLEIMRGELDRIETIVNELLVLSKPQAVHI 1050 Query: 597 QLRDVRLILGDVISLLDSQAHLFGIEFEARFSQQPATVHCEENQLKQVFINIVKNAIEAM 656 Q R+ IL DV+ LL++QA L ++ E R +P + C ENQLKQVFIN++KNAIEAM Sbjct: 1051 QRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQLKQVFINLLKNAIEAM 1110 Query: 657 PDGGTIILEQQIIDGTVVIVISDEGEGVPEEILPKLGEPFFTNKETGTGLGLMVSQRIIQ 716 P+GGTI + + VVI + DEG G+P++ + KLGEPF+T K+ GTGLGLMVS +I++ Sbjct: 1111 PNGGTIEVTVERDGDHVVIRVRDEGVGIPQDKMKKLGEPFYTTKDKGTGLGLMVSFKIVE 1170 Query: 717 SHKGSLEIHSEYGSGAQVTIKLP 739 H G + S+ G G VT++LP Sbjct: 1171 QHGGIIRYESKEGEGTTVTVRLP 1193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,113,139,053 Number of extensions: 170850319 Number of successful extensions: 656797 Number of sequences better than 1.0e-05: 27454 Number of HSP's gapped: 615053 Number of HSP's successfully gapped: 27850 Length of query: 757 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 613 Effective length of database: 1,704,070,043 Effective search space: 1044594936359 Effective search space used: 1044594936359 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)