BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0004.p (168 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK93.1 B3KK93_9BACI CMP/dCMP deaminase zinc-binding 231 2e-59 B1DKA8.1 B1DKA8_9BACL CMP/dCMP deaminase zinc-binding 216 7e-55 C0ZH80.1 C0ZH80_BREBN Putative tRNA specific adenosine deaminase 210 3e-53 Q8EU63.1 Q8EU63_OCEIH Hypothetical conserved protein 198 2e-49 B9DKU7.1 B9DKU7_STACT Putative deaminase 193 4e-48 >B3KK93.1 B3KK93_9BACI CMP/dCMP deaminase zinc-binding Length = 164 Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 108/148 (72%), Positives = 120/148 (81%) Query: 18 HEYWMXXXXXXXXXXXXLGEVPIGAVVVRDGKIIGRGYNLRETTMDSTAHAEMVAIREAS 77 HE WM LGEVPIGAV+VR +IIGRGYNLRETT D TAHAEMVAIREAS Sbjct: 16 HERWMREAIAEARKAEELGEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREAS 75 Query: 78 ALLGSWRLLDCHLYVTLEPCPMCAGAMVQSRVPLTVFGTPDPKAGCAGTLMNLLKEPRFN 137 LG+WRLLDC LYVTLEPCPMCAGA+VQSRVP ++GT DPKAGCAGTLMNLL+EPRFN Sbjct: 76 RHLGAWRLLDCRLYVTLEPCPMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFN 135 Query: 138 HRTEVIQGILQQECAGLLTTFFQQLRKK 165 HRT V+ G+LQ+ECA LLT FF++LR K Sbjct: 136 HRTHVVDGVLQEECASLLTQFFRRLRGK 163 >B1DKA8.1 B1DKA8_9BACL CMP/dCMP deaminase zinc-binding Length = 156 Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 99/147 (67%), Positives = 115/147 (78%) Query: 19 EYWMXXXXXXXXXXXXLGEVPIGAVVVRDGKIIGRGYNLRETTMDSTAHAEMVAIREASA 78 + WM +GEVPIGA++V++G+++GRGYNLRET D TAHAEMVAIREA Sbjct: 8 QAWMQLAIEEAKKAEQIGEVPIGAILVKNGEVVGRGYNLRETNHDPTAHAEMVAIREACE 67 Query: 79 LLGSWRLLDCHLYVTLEPCPMCAGAMVQSRVPLTVFGTPDPKAGCAGTLMNLLKEPRFNH 138 LG+WRLLDC LYVTLEPCPMCAGA+VQSRV V+GT DPKAGCAGTLMNLL+EPRFNH Sbjct: 68 RLGAWRLLDCTLYVTLEPCPMCAGAIVQSRVKRVVYGTGDPKAGCAGTLMNLLQEPRFNH 127 Query: 139 RTEVIQGILQQECAGLLTTFFQQLRKK 165 TE+ G+LQ ECA LLT FF+ LR K Sbjct: 128 ETELTSGVLQAECAELLTNFFRNLRNK 154 >C0ZH80.1 C0ZH80_BREBN Putative tRNA specific adenosine deaminase Length = 160 Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 95/148 (64%), Positives = 113/148 (76%) Query: 18 HEYWMXXXXXXXXXXXXLGEVPIGAVVVRDGKIIGRGYNLRETTMDSTAHAEMVAIREAS 77 H+Y+M +GEVPIGAV+VRDG+I+GRGYNLRET D T HAE++AIREAS Sbjct: 7 HDYYMKQAMEEARKAAAIGEVPIGAVIVRDGEIVGRGYNLRETQKDPTLHAELIAIREAS 66 Query: 78 ALLGSWRLLDCHLYVTLEPCPMCAGAMVQSRVPLTVFGTPDPKAGCAGTLMNLLKEPRFN 137 LG WRL+ C LYVTLEPCPMCAGA+VQSR+ V+G DPKAGCAGTLMNLL EPRFN Sbjct: 67 ERLGGWRLIGCTLYVTLEPCPMCAGAIVQSRIEKVVYGARDPKAGCAGTLMNLLAEPRFN 126 Query: 138 HRTEVIQGILQQECAGLLTTFFQQLRKK 165 H+ VI+G+L +EC +L FF+ LRKK Sbjct: 127 HQVPVIEGVLAEECGQMLKEFFRGLRKK 154 >Q8EU63.1 Q8EU63_OCEIH Hypothetical conserved protein Length = 166 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 91/163 (55%), Positives = 121/163 (74%), Gaps = 3/163 (1%) Query: 6 INDELSSEELAVHEYWMXXXXXXXXXXXXLGEVPIGAVVVRDGKIIGRGYNLRETTMDST 65 + DELS ++ E +M L EVPIGAV+V DG+I+G+G+NLRE+ + Sbjct: 1 MKDELS---VSQDELFMAAAIREARRAWILNEVPIGAVIVHDGEIVGKGFNLRESMQATL 57 Query: 66 AHAEMVAIREASALLGSWRLLDCHLYVTLEPCPMCAGAMVQSRVPLTVFGTPDPKAGCAG 125 HAE++A++EA+ +GSWRL DC LYVTLEPCPMCAGA+VQSR+ V+G PDPKAGCAG Sbjct: 58 THAELLAMQEANNEIGSWRLEDCTLYVTLEPCPMCAGAIVQSRMKRVVYGAPDPKAGCAG 117 Query: 126 TLMNLLKEPRFNHRTEVIQGILQQECAGLLTTFFQQLRKKSSK 168 T+MNLL EPRFNH+ EV G+L+Q+C+ +L FF++LR+K SK Sbjct: 118 TIMNLLNEPRFNHQVEVTSGVLEQQCSTILKEFFKELREKKSK 160 >B9DKU7.1 B9DKU7_STACT Putative deaminase Length = 159 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 111/151 (73%) Query: 15 LAVHEYWMXXXXXXXXXXXXLGEVPIGAVVVRDGKIIGRGYNLRETTMDSTAHAEMVAIR 74 +A E +M +GEVPIGA+VV++G++I R +NLRET TAHAE +AI Sbjct: 1 MATDENYMKLALEEAKKAERIGEVPIGAIVVKEGEVIARAHNLRETVQQPTAHAEHIAIE 60 Query: 75 EASALLGSWRLLDCHLYVTLEPCPMCAGAMVQSRVPLTVFGTPDPKAGCAGTLMNLLKEP 134 +A+ +GSWRL DC LYVTLEPC MC+GA+V SR+P V+G DPK GC+G+LM+LL+EP Sbjct: 61 KAAEAVGSWRLEDCTLYVTLEPCVMCSGAIVMSRIPRVVYGASDPKGGCSGSLMDLLQEP 120 Query: 135 RFNHRTEVIQGILQQECAGLLTTFFQQLRKK 165 RFNHR EV+ G+L+ EC +L +FF+QLR+K Sbjct: 121 RFNHRAEVVSGVLENECGAILKSFFKQLREK 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 873,426,460 Number of extensions: 31381095 Number of successful extensions: 81600 Number of sequences better than 1.0e-05: 2448 Number of HSP's gapped: 81021 Number of HSP's successfully gapped: 2448 Length of query: 168 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 43 Effective length of database: 1,883,069,328 Effective search space: 80971981104 Effective search space used: 80971981104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)