BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0003.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K912.1 B3K912_9BACI Dihydroneopterin aldolase                       201   2e-50
B0YJD4.1 B0YJD4_PAEPO Dihydroneopterin aldolase                       200   4e-50
B1DID2.1 B1DID2_9BACL Dihydroneopterin aldolase EC=4.1.2.25           153   5e-36
Q73FD5.1 Q73FD5_BACC1 Dihydroneopterin aldolase EC=4.1.2.25           141   2e-32
Q81VW7.1 Q81VW7_BACAN Dihydroneopterin aldolase                       139   8e-32

>B3K912.1 B3K912_9BACI Dihydroneopterin aldolase
          Length = 120

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/120 (77%), Positives = 110/120 (91%)

Query: 1   MDKMTLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGRSDDLTLTVNYAEVHFLV 60
           MDKM L RMEYYGYHGVFEEERKLGQRFYVDLELE+DL  A ++DDLTLTVNYAE+H L+
Sbjct: 1   MDKMILSRMEYYGYHGVFEEERKLGQRFYVDLELEMDLSKAAKTDDLTLTVNYAEIHDLL 60

Query: 61  KKIVETKSFKLIEALAEYIASSLLDTYTVINAVTVKVTKPHPPFDIHFQGVTVELHRTRK 120
             I+ T+SF+LIEALAE+IAS +LDTYT+I+A+TV++TKPHPPFDIHF+GVT+ELHRTRK
Sbjct: 61  LDIMRTESFRLIEALAEHIASKVLDTYTIIDALTVRLTKPHPPFDIHFEGVTIELHRTRK 120


>B0YJD4.1 B0YJD4_PAEPO Dihydroneopterin aldolase
          Length = 120

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 105/120 (87%)

Query: 1   MDKMTLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGRSDDLTLTVNYAEVHFLV 60
           MDKM LHRMEYYGYHGVF EERKLGQRFY+DLELELDL+ AG  D L  TVNYAEVH+ V
Sbjct: 1   MDKMVLHRMEYYGYHGVFPEERKLGQRFYIDLELELDLREAGEQDALDKTVNYAEVHYTV 60

Query: 61  KKIVETKSFKLIEALAEYIASSLLDTYTVINAVTVKVTKPHPPFDIHFQGVTVELHRTRK 120
           K IVE +S++LIEAL E IASSLLDTYT +NA+TVKVTKPHPPFDIHFQGVTVEL+R RK
Sbjct: 61  KDIVEKESYQLIEALGERIASSLLDTYTSVNALTVKVTKPHPPFDIHFQGVTVELYRARK 120


>B1DID2.1 B1DID2_9BACL Dihydroneopterin aldolase EC=4.1.2.25
          Length = 128

 Score =  153 bits (386), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 94/119 (78%)

Query: 1   MDKMTLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGRSDDLTLTVNYAEVHFLV 60
           MD M +  M++YGYHGVF EE +LGQ+F VDL+L+LDL+ A  +DDL  T+NYAE++  +
Sbjct: 1   MDSMIMKGMQFYGYHGVFPEENRLGQKFIVDLDLKLDLEKAAATDDLGATINYAELYEQI 60

Query: 61  KKIVETKSFKLIEALAEYIASSLLDTYTVINAVTVKVTKPHPPFDIHFQGVTVELHRTR 119
           K +V+ + +KLIEALA  IA+ +L+ YT+IN VTV+VTKP+PPF+IHF GVT+EL R R
Sbjct: 61  KSVVQGEPYKLIEALAGGIATRVLEAYTMINEVTVRVTKPNPPFEIHFDGVTIELRRKR 119


>Q73FD5.1 Q73FD5_BACC1 Dihydroneopterin aldolase EC=4.1.2.25
          Length = 120

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 87/119 (73%)

Query: 1   MDKMTLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGRSDDLTLTVNYAEVHFLV 60
           MDK+ +H ME+YGYHGVF EE KLGQRF VDL +ELDL+ AG SDDL  +VNY E+  L 
Sbjct: 1   MDKIYIHDMEFYGYHGVFPEENKLGQRFKVDLTVELDLKQAGESDDLEQSVNYGELFELC 60

Query: 61  KKIVETKSFKLIEALAEYIASSLLDTYTVINAVTVKVTKPHPPFDIHFQGVTVELHRTR 119
           +K+VE +++KL+E++AE IA+ +L  Y  I+  T+KV KP PP   H++ V VE+ R R
Sbjct: 61  RKVVEVRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER 119


>Q81VW7.1 Q81VW7_BACAN Dihydroneopterin aldolase
          Length = 120

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 87/119 (73%)

Query: 1   MDKMTLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGRSDDLTLTVNYAEVHFLV 60
           MDK+ +H ME+YGYHGVF EE KLGQRF VDL +ELDL+ AG SDDL  +VNY E+  L 
Sbjct: 1   MDKIYIHDMEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELC 60

Query: 61  KKIVETKSFKLIEALAEYIASSLLDTYTVINAVTVKVTKPHPPFDIHFQGVTVELHRTR 119
           +K+VE +++KL+E++AE IA+ +L  Y  I+  T+KV KP PP   H++ V VE+ R R
Sbjct: 61  RKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 679,171,936
Number of extensions: 22690419
Number of successful extensions: 58706
Number of sequences better than 1.0e-05: 797
Number of HSP's gapped: 58565
Number of HSP's successfully gapped: 797
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)