BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0001.p (245 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K910.1 B3K910_9BACI Aminotransferase class IV 257 8e-67 B0YJD2.1 B0YJD2_PAEPO 4-amino-4-deoxychorismate lyase 249 2e-64 B1DID4.1 B1DID4_9BACL Aminotransferase class IV 218 5e-55 B7GFK2.1 B7GFK2_ANOFW Aminodeoxychorismate lyase 167 8e-40 Q2B270.1 Q2B270_9BACI 4-amino-4-deoxychorismate lyase EC=4.1.3.38 161 6e-38 >B3K910.1 B3K910_9BACI Aminotransferase class IV Length = 295 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 136/245 (55%), Positives = 165/245 (67%), Gaps = 2/245 (0%) Query: 1 LDRLAEGCRQLGIPFDGDAVRLRDWIQQVMGKNELQDAYIRYTVTAGKDILGLPAGDYSQ 60 L+RLA+ CR+LGI DA R+ WI ++M N LQDAYIRYTVTAG+ +LGLPAGDY++ Sbjct: 49 LNRLADCCRELGIAHKADAERISGWIAELMEANGLQDAYIRYTVTAGEGLLGLPAGDYAK 108 Query: 61 PNHLLYIKELPHLPDSLYREGKGLQLLNLPRNTPEGPVRLKSLHYMNNILAKRXXXXX-X 119 P +L+ KELP +LY G+ ++LL+LPRNTPE VR+KSLHYMNNILAKR Sbjct: 109 PAEILFAKELPAANAALYETGRAMRLLSLPRNTPESSVRMKSLHYMNNILAKRELARYPE 168 Query: 120 XXXXXXXXXMLTAQGMVAEGIVSNIFFITDNVLYTPDIAAGILPGITREMVLELALAAGI 179 MLT+ G VAEGIVSN+FF+ LYTP++ GILPGITR +VLELA GI Sbjct: 169 PSGGPPEGLMLTSAGDVAEGIVSNVFFVKKGRLYTPEVGTGILPGITRAVVLELAADLGI 228 Query: 180 RMEAGMYRWEQLAEADEIFLTNSVQEIVPVTTLWRA-NERQTVSGGCCGRITALLLEAYR 238 E G Y W+ ADEIF T SVQEIVPVTTL+ +E T+ G G IT LL YR Sbjct: 229 EAEEGRYGWDVFTGADEIFTTGSVQEIVPVTTLFGVESEALTIGQGVAGPITRTLLYVYR 288 Query: 239 ERTGL 243 + GL Sbjct: 289 RKAGL 293 >B0YJD2.1 B0YJD2_PAEPO 4-amino-4-deoxychorismate lyase Length = 298 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 132/249 (53%), Positives = 163/249 (65%), Gaps = 6/249 (2%) Query: 1 LDRLAEGCRQLGIPFDGDAVRLRDWIQQVMGKNELQDAYIRYTVTAGKDILGLPAGDYSQ 60 L RL EGCR LGIPF D +L IQ +M N L +AY+RYTV+AG+++LGLP GDY++ Sbjct: 49 LHRLQEGCRMLGIPFQPDEEQLTRHIQHLMVANGLDEAYVRYTVSAGEEVLGLPTGDYTR 108 Query: 61 PNHLLYIKELP--HLPDSLYREGKGLQLLNLPRNTPEGPVRLKSLHYMNNILAKRXXXXX 118 PNH+L+ K LP + LQLL PRNTPEG VRLKSLHYMNNILAKR Sbjct: 109 PNHILFAKPLPSTNTQTGQSTSASALQLLQTPRNTPEGEVRLKSLHYMNNILAKRELQQY 168 Query: 119 XXXXXXXXX-XMLTAQGMVAEGIVSNIFFITDNVLYTPDIAAGILPGITREMVLELALAA 177 MLTA G +AEG+VSN+FF+ +N LYTPD++ GILPGITRE +LELA Sbjct: 169 AEAVRYKAEGMMLTANGFLAEGMVSNLFFVRNNTLYTPDLSTGILPGITREFILELAHLR 228 Query: 178 GIRMEAGMYRWEQLAEADEIFLTNSVQEIVPVTTLWR---ANERQTVSGGCCGRITALLL 234 I E G+YRW++L +ADEIF+TNS+QEI PV L A +V ITALLL Sbjct: 229 DIPCEQGLYRWDELKQADEIFMTNSIQEIRPVDLLLEPGGATNHVSVPLTQPRSITALLL 288 Query: 235 EAYRERTGL 243 YR++ G+ Sbjct: 289 HDYRQKAGI 297 >B1DID4.1 B1DID4_9BACL Aminotransferase class IV Length = 293 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 118/242 (48%), Positives = 155/242 (64%), Gaps = 2/242 (0%) Query: 1 LDRLAEGCRQLGIPFDGDAVRLRDWIQQVMGKNELQDAYIRYTVTAGKDILGLPAGDYSQ 60 + RLAEGC +GI + D LR I ++ +N L + YIR TVTAG LGLP+GDY Q Sbjct: 48 MKRLAEGCEAIGIRYKPDLDALRQMIATLLRENGLTEGYIRLTVTAGTGELGLPSGDYEQ 107 Query: 61 PNHLLYIKELPHLPDSLYREGKGLQLLNLPRNTPEGPVRLKSLHYMNNILAKRXXXXXXX 120 P + +K LP +SLY EGK L+LL RNTPEG +RLKSLHYMNNI+AKR Sbjct: 108 PTEFMLVKALPPHNESLYSEGKELRLLKTARNTPEGAIRLKSLHYMNNIIAKR-ELLASG 166 Query: 121 XXXXXXXXMLTAQGMVAEGIVSNIFFITDNVLYTPDIAAGILPGITREMVLELALAAGIR 180 ML+ +G++AEG+VSN+FF+ ++ +YTP GILPGITR+ V+ELA G Sbjct: 167 ASPSAEGLMLSHEGLLAEGVVSNLFFVQEDKIYTPSTDIGILPGITRQRVIELARGLGYT 226 Query: 181 MEAGMYRWEQLAEADEIFLTNSVQEIVPVTTLWRANERQTVSG-GCCGRITALLLEAYRE 239 + G Y +E+L +A+EI+LT S+QE+VPVT + + TV G G G + LL AYRE Sbjct: 227 VREGHYLFEELLDANEIWLTTSIQELVPVTLVTDHHGGSTVVGSGTAGPVLRELLLAYRE 286 Query: 240 RT 241 T Sbjct: 287 DT 288 >B7GFK2.1 B7GFK2_ANOFW Aminodeoxychorismate lyase Length = 289 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 133/237 (56%), Gaps = 14/237 (5%) Query: 1 LDRLAEGCRQLGIPFDGDAVRLRDWIQQVMGKNELQDAYIRYTVTAGKDILGLPAGDYSQ 60 L RL G L I + + Q++ N +DAY+R ++AG +GL Y+ Sbjct: 48 LARLHNGLDMLNISCSITRNDVLHILSQLLKANGYRDAYVRLNISAGIGDVGLQVEPYTN 107 Query: 61 PNHLLYIKELPHLPDSLYREGKGLQLLNLPRNTPEGPVRLKSLHYMNNILAKRXXXXXXX 120 P ++Y+K +P + E K Q L + RNTPEG VRLKS HY+NNIL K+ Sbjct: 108 PTIIMYMKPIP-----TFSEEKVCQTLQVRRNTPEGSVRLKSHHYLNNILGKQEVGHHSN 162 Query: 121 XXXXXXXXMLTAQGMVAEGIVSNIFFITDNVLYTPDIAAGILPGITREMVLELALAAGIR 180 LT +G VAEGIVSN+F++ D ++YTP + GIL G+TR V++L + GI Sbjct: 163 VEGI----FLTKEGFVAEGIVSNVFWVKDGIVYTPSVETGILNGVTRLFVIDLLCSWGID 218 Query: 181 MEAGMYRWEQLAEADEIFLTNSVQEIVPVTTLWRANERQTVSGGCCGRITALLLEAY 237 ++ G Y +QL EADEIFLTNS+QEIVPV L V G CG +T+ L AY Sbjct: 219 VQEGCYSLQQLKEADEIFLTNSIQEIVPVCRL-----DNDVYPGKCGEMTSRLQRAY 270 >Q2B270.1 Q2B270_9BACI 4-amino-4-deoxychorismate lyase EC=4.1.3.38 Length = 291 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 135/241 (56%), Gaps = 12/241 (4%) Query: 1 LDRLAEGCRQLGIPFDGDAVRLRDWIQQVMGKNELQDAYIRYTVTAGKDILGLPAGDYSQ 60 LDRL G L I L I V+ +N +A +R V+AG + LGLP YS Sbjct: 48 LDRLNRGLSTLNIEAAFSREELAGKISMVLERNGCTNANVRLNVSAGIEELGLPPDVYSS 107 Query: 61 PNHLLYIKELPHLPDSLYREGKGLQLLNLPRNTPEGPVRLKSLHYMNNILAKRXXXXXXX 120 P +L+ + LP P E K L LL + RNTPEG RLKS HYMNNILAKR Sbjct: 108 PQTILFARPLP--PAGEMAE-KQLVLLKMRRNTPEGDERLKSHHYMNNILAKRELGNTPG 164 Query: 121 XXXXXXXXMLTAQGMVAEGIVSNIFFITDNVLYTPDIAAGILPGITREMVLELALAAGIR 180 LT +G +AEG+VSN+F+ N+LYTP + GIL GITR+ VL LA G++ Sbjct: 165 QEGI----FLTKEGFLAEGVVSNLFWTKGNILYTPSLETGILNGITRQFVLLLAEKNGLQ 220 Query: 181 MEAGMYRWEQLAEADEIFLTNSVQEIVPVTTLWRANERQTVSGGCCGRITALLLEAYRER 240 ++ G Y+ E++ ADE+F+TNS+QEI P + + GG GR+ +L + YR+ Sbjct: 221 VQEGFYQAEEMMRADEVFVTNSIQEIAPAASFAGV----SFPGG-AGRLAGMLHKEYRKY 275 Query: 241 T 241 + Sbjct: 276 S 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,380,542,155 Number of extensions: 54053459 Number of successful extensions: 116369 Number of sequences better than 1.0e-05: 1651 Number of HSP's gapped: 115436 Number of HSP's successfully gapped: 1651 Length of query: 245 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 113 Effective length of database: 1,817,122,223 Effective search space: 205334811199 Effective search space used: 205334811199 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)