BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0002.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Y4.1 B3K8Y4_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase 277 1e-72 B1DIH4.1 B1DIH4_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase 194 7e-48 C0ZHE0.1 C0ZHE0_BREBN Putative foldase protein PrsA EC=5.2.1.8 117 2e-24 B7IKB8.1 B7IKB8_BACC2 Peptidylprolyl isomerase PrsA1 EC=5.2.1.8 94 1e-17 C3IFW7.1 C3IFW7_BACTU Foldase protein prsA 1 94 1e-17 >B3K8Y4.1 B3K8Y4_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase Length = 361 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 202/327 (61%), Gaps = 2/327 (0%) Query: 1 MSLNKTKSWKVLLVSLAAAVSFSMLAACSSNNNTSSGAKDSSKAVATYKGGTITEKEFDM 60 M K+WK +VS+ A +S SM+AAC N+ T +D+SK + YKGG ITEKEFD+ Sbjct: 1 MPSRNNKAWKTFIVSITAVLSMSMIAACG-NDKTKGAEEDNSKVIVKYKGGEITEKEFDL 59 Query: 61 DTRVMKLLSPQQAQYLEIDAFKESILKQEVAFEYLXXXXXXXXXXXXXXXXXXXXXXIKT 120 + R+++ +SP+ AQ+L++D FKE + KQ VA+EYL K Sbjct: 60 EQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYLYAKADDKAKEAAEKQTDDLLKQQKA 119 Query: 121 GLGD-TYESTLKQANLTEDDIRSYMLRVLTVYQDMLLKVKDDQVKTEFEKTKGDFTVATL 179 G+G+ +++ L+ LTEDD+++YMLRV+TV + +V ++ +K EF+ K D+T ++ Sbjct: 120 GMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKEFDANKKDYTNISV 179 Query: 180 RHVLIGLTDAAGKERTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENGGEIKDK 239 RHVLI DA GKER G DFAA AKEYS D GSK +GG ++K Sbjct: 180 RHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQDPGSKNSGGLYENK 239 Query: 240 ALGGYVEEFKQAAQTLPLNTISDPVKTTFGYHIIKVESRTETTFDKLTAEQKQTIKGSLA 299 G +V +FK+ A TL LN ISDPV+T +GYH++KVE R E T+DKL A+QK+ I+ LA Sbjct: 240 PAGSWVPQFKEKALTLELNKISDPVETDYGYHVMKVEKREEVTYDKLPADQKEGIRSELA 299 Query: 300 SQGLESFLEKDLASLDVKINLPKSSAA 326 S +++F++ +L +L +NLPKS A Sbjct: 300 SAKIDNFMQNELNNLIESMNLPKSENA 326 >B1DIH4.1 B1DIH4_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase Length = 368 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 176/339 (51%), Gaps = 15/339 (4%) Query: 8 SWK--VLLVSLAAAVSFSMLAACSSNNNTSSGAKDSSKA-------VATYKGGTITEKEF 58 +W+ LLV +AA + +++AAC G+ + A VATYK GT+TE EF Sbjct: 9 TWRRSALLV-IAAVLVMTIMAACGGKKENEGGSTGLTFAGAGKGTVVATYKDGTVTEAEF 67 Query: 59 DMDTRVMKLLSPQQAQYLEIDAFKESILKQEVAFEYLXXXXXXXXXXXXXXXXXXXXXXI 118 + + ++ P Q + I FKE +L+Q V+++ L Sbjct: 68 NKYLDIFNIMQPGYEQVIAIPQFKEQLLQQFVSYKILAKQATEATLKKADDETNDQMKSF 127 Query: 119 KTGLGDTYE--STLKQANLTEDDIRSYMLRVLTVYQDMLLKVKDDQVKTEFEKTKGDFTV 176 + L + TL ++ D+R+Y+ +L V + M KV DD++K E+EK G++ Sbjct: 128 EDTLKTNADVKKTLDDKKVSTADVRTYLNLMLVVVEHMNSKVTDDEMKAEYEKNIGNYNP 187 Query: 177 ATLRHVLIGLTDAAGKE---RTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENG 233 T+RH+L+ TD A RT G D+ A AKEYSDDTGSK++G Sbjct: 188 VTVRHILVATTDPADSTKTLRTKEEALARAKEAKAKLDAGGDWTALAKEYSDDTGSKDSG 247 Query: 234 GEIKDKALGGYVEEFKQAAQTLPLNTISDPVKTTFGYHIIKVESRTETTFDKLTAEQKQT 293 GE KD +VE FK AA T P+ I DPV+T +GYH+I VE R + T+DK+T EQKQ Sbjct: 248 GEYKDAKASDWVEGFKNAALTQPVGKIGDPVETEYGYHVILVEKRDQVTYDKITDEQKQE 307 Query: 294 IKGSLASQGLESFLEKDLASLDVKINLPKSSAAAGESGT 332 ++ +A + +F+ ++ DVKI LP++S + S + Sbjct: 308 VQSVVAYNHMNTFMTDEMPKQDVKITLPEASTSPDASAS 346 >C0ZHE0.1 C0ZHE0_BREBN Putative foldase protein PrsA EC=5.2.1.8 Length = 355 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 19/296 (6%) Query: 38 AKDSSKAVATYKGGTITEKEFDMDTRVMKLLSPQQAQYLEIDAFK--ESILKQEVAFEYL 95 A D + Y+GGT+T KEF+ RV+ ++PQQ +E+ K ++ ++ A + L Sbjct: 61 AADQKAVIVEYQGGTVTGKEFEEFLRVINFMNPQQGTMIEMADSKSLKAFAREFTATKVL 120 Query: 96 XXXXXXXXXXXXXXXXXXXXXXIKTG----LGD---TYESTLKQANLTEDDIRSYMLRVL 148 IKT LG + + +T+D I + M + Sbjct: 121 ASRSDDAMKKESKELAEKTFEKIKTQYMSFLGKDEAQFNKLMDGQGVTKDMILNQMDLIN 180 Query: 149 TVYQDMLLKVKDDQVKTEFEKT-KGDFTVATLRHVLIGLTDAAGKERTXXXXXXXXXXXX 207 M + D +K +++ K TVA++RH+LI + ++RT Sbjct: 181 QSINVMKKNIDDATLKQTYDQMDKASRTVASVRHILI-----STEKRTPEEALKISNDLE 235 Query: 208 XXXXGGADFAATAKEYSDDTGSKENGGEIKDKALGGYVEEFKQAAQTLPLNTISDPVKTT 267 G DFA A E++DD GSK++GG ++ + +V EFK+A+ T + + PVKT Sbjct: 236 ARLKKGEDFAKLATEFTDDPGSKQSGGLYENADVTQWVPEFKEASLTQKVGEVGPPVKTN 295 Query: 268 FGYHIIKVESRTETTFDKLTAEQKQTIKGSLASQGLESFLEKDLASLDVKINLPKS 323 FGYHIIKVE+R E TFD E K+ ++ S + ++F + +L L K N+P+S Sbjct: 296 FGYHIIKVENRKEKTFD----EMKEQLRASSLEKAYDTFAKTELDKLITKFNIPQS 347 >B7IKB8.1 B7IKB8_BACC2 Peptidylprolyl isomerase PrsA1 EC=5.2.1.8 Length = 289 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 27/209 (12%) Query: 118 IKTGLGDTYESTLKQANLTEDDIRSYMLRVLTVYQDMLLKVKDDQVKTEFEKTKGDFTVA 177 +K GD +++ +KQ + E+ I++ + L + + + D VK +FE K + + Sbjct: 80 MKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKAS 139 Query: 178 TLRHVLIGLTDAAGKERTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENGGEIK 237 H+L+ + A K + G F AK+YS+DTGSKE GG++ Sbjct: 140 ---HILVKDEETAKKVKDELAQ-------------GKSFEELAKQYSEDTGSKEKGGDLG 183 Query: 238 DKALGGYVEEFKQAAQTLPLNTISDPVKTTFGYHIIKV-ESRTETTFDKLTAEQKQTIKG 296 G V+EF++AAQ L + +S+PVKT FGYHIIKV ++ + TFDK A+ IK Sbjct: 184 FFGPGKMVKEFEEAAQKLKKDEVSEPVKTQFGYHIIKVTDNHADATFDKSKAD----IKK 239 Query: 297 SLA------SQGLESFLEKDLASLDVKIN 319 SLA +Q + + K++ DVK++ Sbjct: 240 SLAQEKTQDAQFMNDLMMKEIKKADVKVD 268 >C3IFW7.1 C3IFW7_BACTU Foldase protein prsA 1 Length = 289 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 27/209 (12%) Query: 118 IKTGLGDTYESTLKQANLTEDDIRSYMLRVLTVYQDMLLKVKDDQVKTEFEKTKGDFTVA 177 +K GD +++ +KQ + E+ I++ + L + + + D VK +FE K + + Sbjct: 80 MKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKAS 139 Query: 178 TLRHVLIGLTDAAGKERTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENGGEIK 237 H+L+ + A K + G F AK+YS+DTGSKE GG++ Sbjct: 140 ---HILVKDEETAKKVKDELAQ-------------GKSFEELAKQYSEDTGSKEKGGDLG 183 Query: 238 DKALGGYVEEFKQAAQTLPLNTISDPVKTTFGYHIIKV-ESRTETTFDKLTAEQKQTIKG 296 G V+EF++AAQ L + +S+PVKT FGYHIIKV ++ + TFDK A+ IK Sbjct: 184 FFGPGKMVKEFEEAAQKLKKDEVSEPVKTQFGYHIIKVTDNHADATFDKSKAD----IKK 239 Query: 297 SLA------SQGLESFLEKDLASLDVKIN 319 SLA +Q + + K++ DVK++ Sbjct: 240 SLAQEKTQDAQFMNDLMMKEIKKADVKVD 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.309 0.126 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,575,037,141 Number of extensions: 54102582 Number of successful extensions: 131024 Number of sequences better than 1.0e-05: 978 Number of HSP's gapped: 131242 Number of HSP's successfully gapped: 979 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 132 (55.5 bits)