BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0001.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Y5.1 B3K8Y5_9BACI Stage V sporulation protein T 312 1e-83 B1DIH1.1 B1DIH1_9BACL Transcriptional regulator, AbrB family 289 7e-77 C0ZHE1.1 C0ZHE1_BREBN Stage V sporulation protein T 279 8e-74 B7DTM2.1 B7DTM2_9BACL Transcriptional regulator, AbrB family 263 5e-69 B7GFI3.1 B7GFI3_ANOFW Transcriptional regulator AbrB family 251 2e-65 >B3K8Y5.1 B3K8Y5_9BACI Stage V sporulation protein T Length = 180 Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 149/180 (82%), Positives = 169/180 (93%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYAESL+E TGHIT+I+DRD+FIA+AGGSKK+YL+K +G+LLE MENRKTVLE+N G+Y Sbjct: 61 EYAESLYESTGHITIISDRDTFIAVAGGSKKEYLDKPIGNLLENCMENRKTVLESNNGTY 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 +I KD+PE +S++VAAPII+GGDPIG VVLL+KD+SV M +MEVKMAETAA FLGKQMEQ Sbjct: 121 EISKDNPEALSAFVAAPIIAGGDPIGSVVLLNKDESVNMGEMEVKMAETAAGFLGKQMEQ 180 >B1DIH1.1 B1DIH1_9BACL Transcriptional regulator, AbrB family Length = 179 Score = 289 bits (740), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/180 (79%), Positives = 160/180 (88%), Gaps = 1/180 (0%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYAESLFE T H+T+ITDRD+ IA+AG SKK+ LEKQ+GS+LE M+NRKT E +G+Y Sbjct: 61 EYAESLFESTNHVTLITDRDTVIAVAGASKKELLEKQIGSILEGCMDNRKTT-EGASGTY 119 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 +I KD +T S+YVAAPI++GGDPIG VVLLSKDD+VKM+QME KM ETAA FL KQMEQ Sbjct: 120 EIVKDLHDTYSAYVAAPIVAGGDPIGTVVLLSKDDAVKMSQMETKMVETAAGFLAKQMEQ 179 >C0ZHE1.1 C0ZHE1_BREBN Stage V sporulation protein T Length = 180 Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 158/180 (87%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYA+SL+E H +I+DRD+ IA+AG SKK+YLEK +GS++EK +E RKT LE NAGSY Sbjct: 61 EYADSLYESMNHTVLISDRDTVIAVAGASKKEYLEKPIGSIVEKCLEERKTRLEKNAGSY 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 +I +D ET+ S+V API++GGDPIG V+LL+K++S KM+ +E+KM+ETAA FL KQMEQ Sbjct: 121 EICRDLNETMGSFVIAPIVAGGDPIGSVILLNKNESTKMSDLEIKMSETAAGFLAKQMEQ 180 >B7DTM2.1 B7DTM2_9BACL Transcriptional regulator, AbrB family Length = 180 Score = 263 bits (672), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 129/180 (71%), Positives = 148/180 (82%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYA+SL E TGHI MI DRD IA++G KK++L+K V +E+ ME RKTV + AG Y Sbjct: 61 EYADSLAENTGHIAMIADRDVIIAVSGAPKKEFLDKPVSEDIEQAMEERKTVHNSTAGEY 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 I +D PE + V APII+ GDPIG V+L ++D+SV+M + EVK+AETAA FLGKQMEQ Sbjct: 121 AIVRDRPERFGARVIAPIIAAGDPIGAVILATRDESVRMGETEVKLAETAAGFLGKQMEQ 180 >B7GFI3.1 B7GFI3_ANOFW Transcriptional regulator AbrB family Length = 178 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/180 (68%), Positives = 146/180 (81%), Gaps = 2/180 (1%) Query: 14 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK 73 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPI ELGDFAK Sbjct: 1 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAK 60 Query: 74 EYAESLFEGTGHITMITDRDSFIALAGGSKKDYLEKQVGSLLEKVMENRKTVLETNAGSY 133 EYAE+LF+ G +I DRD FIA+AGGSKK+YL K V L+EKVME+R+++L T + Sbjct: 61 EYAEALFDSLGQPVLICDRDVFIAVAGGSKKEYLNKSVSELVEKVMEDRQSILHTEEKNV 120 Query: 134 DIGKDHPETVSSYVAAPIISGGDPIGCVVLLSKDDSVKMAQMEVKMAETAAAFLGKQMEQ 193 + H E + SYV APII+GGDPIG V++ SKD + + ++E K AETAA+FL +QMEQ Sbjct: 121 SFTQGHEEHMQSYVIAPIIAGGDPIGAVIIFSKDKT--LGEVEHKAAETAASFLARQMEQ 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,105,554,296 Number of extensions: 46931295 Number of successful extensions: 101345 Number of sequences better than 1.0e-05: 587 Number of HSP's gapped: 101138 Number of HSP's successfully gapped: 588 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)