BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0032.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K344.1 B3K344_9BACI ATP phosphoribosyltransferase EC=2.4.2.17 375 e-102 B1DKX0.1 B1DKX0_9BACL ATP phosphoribosyltransferase EC=2.4.2.17 347 4e-94 C0Z6P9.1 C0Z6P9_BREBN ATP phosphoribosyltransferase EC=2.4.2.17 285 1e-75 O34520.1 HIS1_BACSU ATP phosphoribosyltransferase EC=2.4.2.17 280 7e-74 A8FHR4.1 HIS1_BACP2 ATP phosphoribosyltransferase EC=2.4.2.17 276 1e-72 >B3K344.1 B3K344_9BACI ATP phosphoribosyltransferase EC=2.4.2.17 Length = 213 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/210 (86%), Positives = 197/210 (93%) Query: 3 MSQILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPT 62 M++ LKVAMPKGRIY KA+ LFR AGLPIP D +E+RKLVI LPEAGMEFILAKPVDVPT Sbjct: 1 MAETLKVAMPKGRIYKKASALFRSAGLPIPLDVDETRKLVIPLPEAGMEFILAKPVDVPT 60 Query: 63 YVEYGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLPNWQPGIQQRVATKYPNV 122 YVEYGVADIGIVGKDVL+EEN+DVYELLDLGIARCRMS+IGLP+W+PGI+QRVATKYPNV Sbjct: 61 YVEYGVADIGIVGKDVLMEENKDVYELLDLGIARCRMSVIGLPDWKPGIRQRVATKYPNV 120 Query: 123 ASRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEITSR 182 AS+YFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLK+NGLVEM SIFEITSR Sbjct: 121 ASQYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKENGLVEMTSIFEITSR 180 Query: 183 LVANRVSYRMKNEEIQQLCDRLQAVITGPG 212 L+ANRVSYRMKN+EIQ LCDRLQ VI G Sbjct: 181 LIANRVSYRMKNDEIQALCDRLQTVIMSEG 210 >B1DKX0.1 B1DKX0_9BACL ATP phosphoribosyltransferase EC=2.4.2.17 Length = 214 Score = 347 bits (890), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 166/205 (80%), Positives = 187/205 (91%) Query: 6 ILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPTYVE 65 ILKVAMPKGRIY +A++LFR+AGLPIP D +++RKL+I LPE GMEFI+AKPVDVPTYVE Sbjct: 8 ILKVAMPKGRIYKQASKLFREAGLPIPSDFDDTRKLIIELPEVGMEFIMAKPVDVPTYVE 67 Query: 66 YGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLPNWQPGIQQRVATKYPNVASR 125 YGVADIGIVGKDVL+EEN+DVYELLDLGIA+CRMS+IGL +W+P I RVATKYPNVAS+ Sbjct: 68 YGVADIGIVGKDVLMEENKDVYELLDLGIAKCRMSVIGLADWKPVINPRVATKYPNVASQ 127 Query: 126 YFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEITSRLVA 185 YFRE GQQVEV+KLNGSIELAPLIGLADRIVDMVETGQTL++NGLVEM+ IF ITSRL+A Sbjct: 128 YFRELGQQVEVIKLNGSIELAPLIGLADRIVDMVETGQTLRENGLVEMEPIFPITSRLIA 187 Query: 186 NRVSYRMKNEEIQQLCDRLQAVITG 210 NRVSYRMKNE IQ LCDRLQ I Sbjct: 188 NRVSYRMKNEAIQSLCDRLQDTIAA 212 >C0Z6P9.1 C0Z6P9_BREBN ATP phosphoribosyltransferase EC=2.4.2.17 Length = 215 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/205 (65%), Positives = 167/205 (81%) Query: 4 SQILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPTY 63 Q L +AMPKGRI+ +A +QAGL + D ++SRKL+I + A +EFI+AKP DVPTY Sbjct: 7 DQKLTIAMPKGRIFEEAVHFLQQAGLQVTADLQDSRKLIIPVENAKLEFIMAKPTDVPTY 66 Query: 64 VEYGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLPNWQPGIQQRVATKYPNVA 123 VEYGVAD+G+VGKDVLLEE RDVYELLDL I CRM + GLP+W+P RVATKYP +A Sbjct: 67 VEYGVADVGVVGKDVLLEEERDVYELLDLHIGYCRMMVAGLPDWKPTEALRVATKYPKIA 126 Query: 124 SRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEITSRL 183 SRYFREQGQQVEV+KLNGS+ELAP+IGLADRIVD+V TG+TL++NGLVE++SI EIT+RL Sbjct: 127 SRYFREQGQQVEVIKLNGSVELAPMIGLADRIVDIVSTGRTLRENGLVELESICEITTRL 186 Query: 184 VANRVSYRMKNEEIQQLCDRLQAVI 208 +ANR SYRMK+E + ++ + VI Sbjct: 187 IANRASYRMKSEAVDEIAGKFLEVI 211 >O34520.1 HIS1_BACSU ATP phosphoribosyltransferase EC=2.4.2.17 Length = 213 Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 170/210 (80%), Gaps = 3/210 (1%) Query: 3 MSQILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPT 62 M ++L +AMPKGRI+ +AA L RQAG +P + E+SRKL+I +PE + FILAKP+DV T Sbjct: 1 MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTT 60 Query: 63 YVEYGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLPN--WQPGIQQRVATKYP 120 YVE+GVAD+GI GKDV+LEE RDVYE+LDL I++C +++ GLPN W G+ R+ATKYP Sbjct: 61 YVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWS-GVAPRIATKYP 119 Query: 121 NVASRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEIT 180 NVAS YFREQG+QVE++KLNGSIELAPLIGLADRIVD+V TGQTLK+NGLVE + I +IT Sbjct: 120 NVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDIT 179 Query: 181 SRLVANRVSYRMKNEEIQQLCDRLQAVITG 210 SR + N VSYRMK++ I ++ RL V+ G Sbjct: 180 SRFIVNPVSYRMKDDVIDEMASRLSLVVEG 209 >A8FHR4.1 HIS1_BACP2 ATP phosphoribosyltransferase EC=2.4.2.17 Length = 213 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 169/210 (80%), Gaps = 3/210 (1%) Query: 3 MSQILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPT 62 M ++L +AMPKGRI+ +AA L RQAG +P + E+SRKL+I +PE + FILAKP+DV T Sbjct: 1 MGKVLTMAMPKGRIFEEAAGLLRQAGYQLPEEFEDSRKLIIDVPEESLRFILAKPMDVTT 60 Query: 63 YVEYGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLP--NWQPGIQQRVATKYP 120 YVE+GVAD+GI GKDV+LEE RDVYE+LDL I++C +++ GLP +W G+ RVATKYP Sbjct: 61 YVEHGVADVGIAGKDVMLEEARDVYEVLDLNISKCHLAVAGLPGASWG-GVAPRVATKYP 119 Query: 121 NVASRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEIT 180 NVAS YFREQG+QVE++KLNGSIELAPLIGLADRIVD+V TGQTLK+NGLVE + I +IT Sbjct: 120 NVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDIT 179 Query: 181 SRLVANRVSYRMKNEEIQQLCDRLQAVITG 210 SR + N VSYRMK+ I ++ RL +I G Sbjct: 180 SRFIVNPVSYRMKDAVIDEMAQRLARIIEG 209 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,265,328,721 Number of extensions: 51145359 Number of successful extensions: 139767 Number of sequences better than 1.0e-05: 1304 Number of HSP's gapped: 137987 Number of HSP's successfully gapped: 1304 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)