BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0023.p (605 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K353.1 B3K353_9BACI Tetratricopeptide TPR_2 repeat protein 679 0.0 B1DKX8.1 B1DKX8_9BACL Tetratricopeptide TPR_2 repeat protein 630 e-178 C0Z6P2.1 C0Z6P2_BREBN Putative uncharacterized protein 342 6e-92 B7DSZ8.1 B7DSZ8_9BACL Tetratricopeptide TPR_2 repeat protein 312 7e-83 C1PV12.1 C1PV12_ALIAC Tetratricopeptide repeat protein 306 5e-81 >B3K353.1 B3K353_9BACI Tetratricopeptide TPR_2 repeat protein Length = 581 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/569 (58%), Positives = 418/569 (73%), Gaps = 8/569 (1%) Query: 42 NVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMGKYE 101 NVI + ++ANFFF+RAVRSLDR+QYDKALK FRKAVEYEP+NPVNHCNMAGILSE G Y+ Sbjct: 16 NVISIEMNANFFFDRAVRSLDRYQYDKALKYFRKAVEYEPDNPVNHCNMAGILSETGDYK 75 Query: 102 ASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAESEEL 161 ASND+L H+LE+VDP MTEC+FYMANNYANME FE+AE +LVTYL+ED NG+F+ E+EE+ Sbjct: 76 ASNDVLAHILEQVDPLMTECYFYMANNYANMEQFEKAEEALVTYLEEDPNGQFLDEAEEM 135 Query: 162 MELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEEIVQNIPDFLAAHN 221 MELL YELNRPA L RI+SREGVVEH+ AR+LLEEGKF QAV LLEEIV++ PDFLAA N Sbjct: 136 MELLHYELNRPAKLNRIKSREGVVEHEHARALLEEGKFAQAVKLLEEIVKDNPDFLAARN 195 Query: 222 NLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGMLEATV 281 NLALAY+YMGRF AK + EVL Q+PGNLH LCN+AIF Q+ G++EQ L+ ML TV Sbjct: 196 NLALAYYYMGRFDTAKRTIGEVLDQEPGNLHGLCNLAIFFQHEGNQEQRDRLMDMLTVTV 255 Query: 282 PFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCAAAASNSGFVSEAV 341 PFH EHVFK+ATTMGILG+H AYGHFRRLLK++E GD SLYHY A AA NSG+ +A Sbjct: 256 PFHLEHVFKLATTMGILGQHEIAYGHFRRLLKEDEFNGDPSLYHYTAVAACNSGYYDKAE 315 Query: 342 RCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLPFQEQLKQWKNNMDSFSE 401 + W+ A KLD +S +P F+L+QLQ + G VSY+Y LPF+EQ K+W+++ D +E Sbjct: 316 KYWRQALKLDGDSVIPDFYLAQLQKRKETGTDQMKVSYHYHLPFEEQFKRWEHDGDKLTE 375 Query: 402 EVRNNPLLRASFFWALRYGDASTKLQVTEALRWIGDDELSEVLKGAGGQEPLQESALLGL 461 E + NPL+R+SFFWALR+GD TKLQV L I D+E+ L+ + QEP +++ L Sbjct: 376 EAKQNPLIRSSFFWALRHGDPQTKLQVIRTLELIADEEVQHALQ-SFLQEPGEDAELKDA 434 Query: 462 QRLIGGRPEESA--IQNAVQEPAVPGYKG---LPEWKEDWQRVIDQTAAVMDRRYDAVLK 516 RL+ + E ++ ++ + + G K LP+W W+ V+++ MD R DA K Sbjct: 435 ARLVLQQMEAASNRLKERRDDRDLSGGKTREVLPDWLPSWKAVLEKAEQTMDMRVDAFWK 494 Query: 517 KDAELLWKQFISRLYPDVPLFRHTAGWCAALEYLTAKLHGYPLTYREAAQCYSVSVSMVS 576 K+ E LW +F+SRLYPD+P R+ GW AALEYLTAK G LTY + A Y +S S VS Sbjct: 495 KEMENLWSEFLSRLYPDIPNIRNVEGWAAALEYLTAKKRGRTLTYEQVAVRYGISPSTVS 554 Query: 577 RYARRIHQVCGFPQDGAAGDVLPPFTENI 605 RYAR++ VC D PFTENI Sbjct: 555 RYARQMDSVC--ETKAQPDDSFRPFTENI 581 >B1DKX8.1 B1DKX8_9BACL Tetratricopeptide TPR_2 repeat protein Length = 581 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/569 (53%), Positives = 409/569 (71%), Gaps = 10/569 (1%) Query: 29 MIERTSENDVENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHC 88 M E+ E + +IP+ DA FFFERAVRSLDR+ YDKALK FR+AVEYEPENPVNHC Sbjct: 1 MKEKKREAIEQTAKIIPIQWDATFFFERAVRSLDRYHYDKALKYFRRAVEYEPENPVNHC 60 Query: 89 NMAGILSEMGKYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQE 148 NMAGI+SEMG YE SN IL +++E+DP+MTECHFYMANNYANME +E AE +L+ YL+E Sbjct: 61 NMAGIMSEMGNYEESNRILKWIVDELDPTMTECHFYMANNYANMEMYEAAEGALIHYLEE 120 Query: 149 DANGEFIAESEELMELLQYELNRPAPLVRIRSREGVVEHDRARSLLEEGKFPQAVTLLEE 208 DA+G+++ E+EE+MELLQYEL RPAPL I++REG+VEHD+AR LLEEGKF +AV +LE+ Sbjct: 121 DADGQYLDEAEEMMELLQYELERPAPLTNIKAREGMVEHDQARKLLEEGKFTEAVRILEK 180 Query: 209 IVQNIPDFLAAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDRE 268 I++ P+FLAA NNLALAY+YMG F KA + E L +PGNLHALCN+ IF Q+AGD++ Sbjct: 181 IIEEQPEFLAARNNLALAYYYMGMFDKAMATIREALELEPGNLHALCNLGIFYQHAGDKD 240 Query: 269 QLAGLVGMLEATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCA 328 L L+ +L T PFHQEHVFK+ATTMGILG+H +AY HF RLLKD E+ D LYHY A Sbjct: 241 SLTPLLDLLRKTAPFHQEHVFKLATTMGILGEHESAYRHFTRLLKDVELNLDPCLYHYAA 300 Query: 329 AAASNSGFVSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLPFQEQ 388 AA G EA R W+ AAKLDPES +P++++ QL L + +G VSY+Y LPF+EQ Sbjct: 301 VAACQIGRYVEAERLWKQAAKLDPESDIPRYYMEQLTLIK-DGDQNASVSYHYHLPFEEQ 359 Query: 389 LKQWKNNMDSFSEEVRNNPLLRASFFWALRYGDASTKLQVTEALRWIGDDELSEVLKG-- 446 K W+N+ D E ++ +PL+R+SFFWALR+GD +TKLQV +AL I D+E+ +VL+ Sbjct: 360 FKLWENSSDGLPEHLKRDPLVRSSFFWALRHGDQNTKLQVIQALGMIADNEVKDVLRAFL 419 Query: 447 --AGGQEPLQESALLGLQRLIGGRPEESAIQN--AVQEP-AVPGYKGLPEWKEDWQRVID 501 A + L+ A+ L+ + P ++ ++ V EP VP LP W++ WQ V++ Sbjct: 420 LEADEDDYLKRIAVFVLRTIGVQEPLQAVLEGKATVIEPNRVPS--RLPVWEDKWQEVVE 477 Query: 502 QTAAVMDRRYDAVLKKDAELLWKQFISRLYPDVPLFRHTAGWCAALEYLTAKLHGYPLTY 561 + +++R+D V + D LW +F+SRLYP+VP GW AALEYLTAK+H +Y Sbjct: 478 AAMSRVNKRFDLVQQYDLMTLWVEFLSRLYPEVPKLTKPEGWAAALEYLTAKMHRRTTSY 537 Query: 562 REAAQCYSVSVSMVSRYARRIHQVCGFPQ 590 E ++ Y VS++ VS+ A++I +VCG + Sbjct: 538 PEISERYGVSIATVSKNAKKIDEVCGIKE 566 >C0Z6P2.1 C0Z6P2_BREBN Putative uncharacterized protein Length = 547 Score = 342 bits (877), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 172/403 (42%), Positives = 260/403 (64%), Gaps = 5/403 (1%) Query: 38 VENGNVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEM 97 ++ V+ DA FF +R +R L+R+ YDKAL++FR+AVE EP N HC++A L+E Sbjct: 8 LKKTTVVDFKQDAAFFVDRGMRCLNRYDYDKALRSFRRAVEMEPTNAECHCHLASALAET 67 Query: 98 GKYEASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAE 157 G++EASN++L V+E+ DPSMTE +FYMANNYAN+E + AE V YLQED+ G + + Sbjct: 68 GQFEASNEVLYEVIEKWDPSMTEVYFYMANNYANLEDYHMAEEMAVRYLQEDSTGPYRED 127 Query: 158 SEELMELLQYELNRPAPLVRIRSREGVV-EHDRARSLLEEGKFPQAVTLLEEIVQNIPDF 216 +EEL++ + +EL+ P +E V +H+RAR LEEG+F +A+ L+EIV+ P+F Sbjct: 128 AEELLDYIYFELDMPPRHFLPSEKEDVYSKHERARRSLEEGRFLEALDTLKEIVEADPEF 187 Query: 217 LAAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGM 276 L A NNL+LAY+Y G F KA E +++ L ++ GNLHALCN+A+ L + +L L+ Sbjct: 188 LPAWNNLSLAYYYAGEFEKAMETIEQTLDKEEGNLHALCNLAVLLSHHNQTVELLSLIDT 247 Query: 277 LEATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGDASLYHYCAAAASNSGF 336 L+ VPFH E+ +K+ATTMG+LG+H AY H++R+L++ +A YHY A +A SG Sbjct: 248 LKKVVPFHPENTYKLATTMGVLGQHDEAYFHYQRMLRNGR-PHEACTYHYAAISAYLSGK 306 Query: 337 VSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLPFQEQLKQWKNNM 396 +A+R WQ A +LDPE+ + ++ ++ Q EG + P+ Y Y ++ W+ Sbjct: 307 KDQALRWWQKAKQLDPEAGIADQYIQMVKNEQ-EGETIKPIPYQYNTTQRD--VSWEKAS 363 Query: 397 DSFSEEVRNNPLLRASFFWALRYGDASTKLQVTEALRWIGDDE 439 + E+ + +P++RAS WAL++G K V + L IGDDE Sbjct: 364 FTGVEDFKTDPMIRASLLWALQHGRDEVKFAVLQTLSLIGDDE 406 >B7DSZ8.1 B7DSZ8_9BACL Tetratricopeptide TPR_2 repeat protein Length = 636 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 206/570 (36%), Positives = 325/570 (57%), Gaps = 38/570 (6%) Query: 42 NVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMGKYE 101 NVI + LDA++FFER +R L R +A+K F++ VEYEP+NPVN+CN+AG+L+E+G +E Sbjct: 67 NVIAMKLDASYFFERGMRFLQRNDLARAVKAFQRTVEYEPDNPVNYCNLAGVLAELGDFE 126 Query: 102 ASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAESEEL 161 ASN++L +VLE +DP M+EC FY+ANNYAN+ ++ AE L+ YL D +GE+ AE+EE+ Sbjct: 127 ASNELLHYVLEHMDPHMSECWFYLANNYANLGDYDAAEEHLLRYLDIDPDGEYAAEAEEM 186 Query: 162 MELLQYELNRPAPLVRIRSREGVVEHDRA----RSLLEEGKFPQAVTLLEEIVQNIPDFL 217 + +L E L R R E E +A R LE G+F AV LE++V P + Sbjct: 187 LSILIDEFGGGRALERRRREEARAETMQAIQDGRYFLEHGQFEVAVEWLEQVVAADPSHI 246 Query: 218 AAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGML 277 AA NNL+LAY+Y G++ KA + VL + P NLHALCN A+ LQ+ GD E+L V L Sbjct: 247 AARNNLSLAYYYTGQYDKALAMAESVLERQPDNLHALCNRALLLQHFGDEERLRRAVEPL 306 Query: 278 EATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGD-ASLYHYCAAAASNSGF 336 +P H + K+A T+G++G+H A FRRL + V D L H AAA +N G Sbjct: 307 LKVIPLHPDIAMKVAITLGVVGRHADALAAFRRLAR--LVPPDHPMLLHGLAAAHANLGN 364 Query: 337 VSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLPFQEQLKQWKNNM 396 ++ A W+ ++ + + V + L +++ A+A G VSY +P + QL + ++ + Sbjct: 365 LTTAESLWRQLSRHEDCARVVDYHLERVRQARAAGLASVSVSYQLDVPVEMQLAEVRDRL 424 Query: 397 DSFS-EEVRNNPLLRASFFWALRYGDASTKLQVTEALRWIGDDELSEVLKG----AGGQE 451 + S +E + +PLLRAS +W+LR+G+ + +V AL +GD++ + LK + Sbjct: 425 QTSSPDEWKRDPLLRASLYWSLRHGNREVRQRVIRALAVVGDNDAEQALKSFLARSDIDA 484 Query: 452 PLQESALLGLQRLIGGR----------PEESAIQNAVQEPAVPGYKGLPEWKEDWQRVID 501 LQE L+ L+R+ G + P E +++ Q+ + + P+W+E W+ Sbjct: 485 SLQEQTLVALKRM-GAKGPVRIWRTAGPIEIRLEDVRQDVIL---ELQPQWREVWELA-- 538 Query: 502 QTAAVMDRRYDAVLKKDAELLWKQFISRLYPDVPL-----FRHTAGWCAALEYLTAKLHG 556 A ++ R A++ + A W ++ LY D+ L W + L Y+ + Sbjct: 539 -EAWLVSRGLRALVGQ-ARRFW---LTYLYDDLFLDLRKRIVKPESWASGLLYVVLRYAN 593 Query: 557 YPLTYREAAQCYSVSVSMVSRYARRIHQVC 586 P+ R+ A ++VSVS +S+ + R+ QV Sbjct: 594 VPVLQRDLAAQFNVSVSSLSKCSSRLEQVV 623 >C1PV12.1 C1PV12_ALIAC Tetratricopeptide repeat protein Length = 597 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 206/570 (36%), Positives = 317/570 (55%), Gaps = 38/570 (6%) Query: 42 NVIPVTLDANFFFERAVRSLDRFQYDKALKNFRKAVEYEPENPVNHCNMAGILSEMGKYE 101 NVI + LDA++FFER +R L R +A+K F++ VEYEP+NPVN+CN+AG+L+E+G +E Sbjct: 28 NVIAMKLDASYFFERGMRFLQRNDLARAVKAFQRTVEYEPDNPVNYCNLAGVLAELGDFE 87 Query: 102 ASNDILTHVLEEVDPSMTECHFYMANNYANMESFEEAERSLVTYLQEDANGEFIAESEEL 161 ASN++L +VLE +DP M+EC FY+ANNYAN+ ++ AE L+ YL D +GE+ AE+EE+ Sbjct: 88 ASNELLHYVLEHMDPHMSECWFYLANNYANLGDYDAAEEHLLRYLDLDPDGEYAAEAEEM 147 Query: 162 MELLQYELNRPAPLVRIRSREGVVEHDRA----RSLLEEGKFPQAVTLLEEIVQNIPDFL 217 + +L E L R R E E +A R LE G+F AV LE++V P + Sbjct: 148 LSILIDEFGGGRALERRRREEARAETMQAIQDGRYFLENGQFEVAVEWLEQVVAADPSHI 207 Query: 218 AAHNNLALAYFYMGRFAKAKECLDEVLAQDPGNLHALCNMAIFLQYAGDREQLAGLVGML 277 AA NNL+LAY+Y G++ KA + VL + P NLHALCN A+ LQ+ GD ++L V L Sbjct: 208 AARNNLSLAYYYTGQYDKALAMAESVLERQPDNLHALCNRALLLQHFGDEDRLRRAVEPL 267 Query: 278 EATVPFHQEHVFKMATTMGILGKHRTAYGHFRRLLKDEEVGGD-ASLYHYCAAAASNSGF 336 + +P H + K+A T+G +G+H A FRRL + V D L H AAA +N G Sbjct: 268 QKVIPLHPDIAMKVAITLGFVGRHADALAAFRRLAR--LVPPDHPMLLHGLAAAHANLGN 325 Query: 337 VSEAVRCWQMAAKLDPESAVPKFFLSQLQLAQAEGRPLPPVSYNYQLPFQEQLKQWKNNM 396 ++ A W+ ++ + + V + L +++ A+ G VSY +P + QL + ++ + Sbjct: 326 LTCAEALWRQLSRHEDCARVADYHLERVRQARGAGLTSVSVSYQLDIPVEMQLAEVRDRL 385 Query: 397 DSFS-EEVRNNPLLRASFFWALRYGDASTKLQVTEALRWIGDDELSEVLKGAGGQ----E 451 + S +E + +PLLRAS +W+LR+G+ + +V AL +GD + + LK + Sbjct: 386 QTSSPDEWKRDPLLRASLYWSLRHGNREVRQRVIRALAVVGDGDAEQALKSFLARPDIDA 445 Query: 452 PLQESALLGLQRLIGGR----------PEESAIQNAVQEPAVPGYKGLPEWKEDWQRVID 501 LQE L+ L+R+ G + P E +++ Q+ + P+W+E W D Sbjct: 446 SLQEQTLVALKRM-GAKGSVRIWRAAGPIEMRLEDVRQDIILDLQ---PQWREVW----D 497 Query: 502 QTAAVMDRRYDAVLKKDAELLWKQFISRLYPDVPL-----FRHTAGWCAALEYLTAKLHG 556 + R L A W ++ LY D+ L W A L Y+ + Sbjct: 498 LAEEWLIARGLRALVGQARRFW---LTYLYDDLFLDLRKRIVKPESWAAGLLYVVLRYAN 554 Query: 557 YPLTYREAAQCYSVSVSMVSRYARRIHQVC 586 P+ R+ A +SVSVS +S+ + R+ QV Sbjct: 555 VPVLQRDLAAHFSVSVSSLSKCSSRMEQVV 584 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,660,150,933 Number of extensions: 153116343 Number of successful extensions: 421260 Number of sequences better than 1.0e-05: 250 Number of HSP's gapped: 421215 Number of HSP's successfully gapped: 276 Length of query: 605 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 463 Effective length of database: 1,722,912,073 Effective search space: 797708289799 Effective search space used: 797708289799 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)