BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0017.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K380.1 B3K380_9BACI Putative uncharacterized protein 533 e-149 B1DKY1.1 B1DKY1_9BACL Putative uncharacterized protein 493 e-138 C5D7N3.1 C5D7N3_9BACI Putative uncharacterized protein 382 e-104 Q9K705.1 Y3569_BACHD UPF0042 protein BH3569 378 e-103 C0Z6P0.1 C0Z6P0_BREBN Putative uncharacterized protein 377 e-103 >B3K380.1 B3K380_9BACI Putative uncharacterized protein Length = 302 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/288 (88%), Positives = 274/288 (95%) Query: 12 ATLIIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSKGKIAKVALVIDL 71 ATLIIITGMSGAGKT+AVQSLEDLGFFCVDNLPPVLIPKFAELI+QSKGKI KVALVIDL Sbjct: 15 ATLIIITGMSGAGKTLAVQSLEDLGFFCVDNLPPVLIPKFAELIDQSKGKIGKVALVIDL 74 Query: 72 RGREFFTALSESLSYIKDESTIGFEILFLDATDSVLVQRYKESRRHHPLAPKGMPLDGIR 131 RGREFFTALSESL+YIKD TI EILFLDATDSVLVQRYKESRR HPLAP+GMPLDGIR Sbjct: 75 RGREFFTALSESLNYIKDHFTIHCEILFLDATDSVLVQRYKESRRRHPLAPEGMPLDGIR 134 Query: 132 LERQMLEELKNSATLCLDTSSMKPVQLKERIVSRFSHLGKSTLSVNITSFGFKYGIPIDA 191 LER+ML+ELKNSAT +DTS+MKPV+LKE+I+SRF+HL STLSVNITSFGFKYGIPIDA Sbjct: 135 LERKMLDELKNSATQVIDTSNMKPVRLKEKIISRFTHLESSTLSVNITSFGFKYGIPIDA 194 Query: 192 DLVFDVRFLPNPHYVDQLRPKTGQDSEVYDYVMKWPETQVFLTKLLDMLHFLIPQYRKEG 251 DLVFDVRFLPNPHYV+ LRP TGQ+S+VY+YVMKWPETQ FLTKLLDMLHFLIPQYRKEG Sbjct: 195 DLVFDVRFLPNPHYVEHLRPNTGQNSDVYEYVMKWPETQAFLTKLLDMLHFLIPQYRKEG 254 Query: 252 KSQIIIGIGCTGGKHRSVAISEYLGKMLGVSETEAVAVSHRDSERDRH 299 KSQ+IIGIGCTGGKHRSVAI+EYLGKMLGVSETE V+VSHRDSERDRH Sbjct: 255 KSQVIIGIGCTGGKHRSVAIAEYLGKMLGVSETETVSVSHRDSERDRH 302 >B1DKY1.1 B1DKY1_9BACL Putative uncharacterized protein Length = 308 Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/288 (80%), Positives = 262/288 (90%) Query: 12 ATLIIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSKGKIAKVALVIDL 71 + L+IITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQS GKI KVALVIDL Sbjct: 21 SKLVIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSNGKIGKVALVIDL 80 Query: 72 RGREFFTALSESLSYIKDESTIGFEILFLDATDSVLVQRYKESRRHHPLAPKGMPLDGIR 131 RGREFFTALSESLS+IK+ TI EILFLDATD VLVQRYKESRR HPLAP+GMPL+GIR Sbjct: 81 RGREFFTALSESLSFIKEHFTISCEILFLDATDEVLVQRYKESRRRHPLAPEGMPLEGIR 140 Query: 132 LERQMLEELKNSATLCLDTSSMKPVQLKERIVSRFSHLGKSTLSVNITSFGFKYGIPIDA 191 ER+MLE+LK SA+ +DTS++KP QLKERI+SRF++L ++LSVN+TSFGFKYGIPIDA Sbjct: 141 NERRMLEDLKGSASQVIDTSNIKPAQLKERIISRFTNLENNSLSVNVTSFGFKYGIPIDA 200 Query: 192 DLVFDVRFLPNPHYVDQLRPKTGQDSEVYDYVMKWPETQVFLTKLLDMLHFLIPQYRKEG 251 DL++DVRFLPNPHYVD LRP TGQ+ EVYDYVMKWPETQ FLTKLLDML FL+P Y KEG Sbjct: 201 DLIYDVRFLPNPHYVDHLRPNTGQNPEVYDYVMKWPETQAFLTKLLDMLQFLLPLYHKEG 260 Query: 252 KSQIIIGIGCTGGKHRSVAISEYLGKMLGVSETEAVAVSHRDSERDRH 299 KSQ++IGIGCTGGKHRSVAI+EYLG+MLG S+TE V VSHRD++RD+H Sbjct: 261 KSQVVIGIGCTGGKHRSVAIAEYLGRMLGSSDTERVRVSHRDADRDKH 308 >C5D7N3.1 C5D7N3_9BACI Putative uncharacterized protein Length = 297 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/285 (61%), Positives = 226/285 (79%), Gaps = 2/285 (0%) Query: 14 LIIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSKGKIAKVALVIDLRG 73 ++IITGMSGAGKT+A+ S EDLGFFCVDNLPP L+PKF EL+++S K+ KVALV+DLR Sbjct: 11 MVIITGMSGAGKTVAIHSFEDLGFFCVDNLPPTLLPKFLELMKESGNKMNKVALVMDLRS 70 Query: 74 REFFTALSESLSYIKDESTIGFEILFLDATDSVLVQRYKESRRHHPLAPKGMPLDGIRLE 133 R+FF +L +L + ++S + +ILFLDA DS LV RYKE+RR HPLAP G+PL+GIRLE Sbjct: 71 RDFFDSLFTALDELTEQSWVTPQILFLDAKDSTLVARYKETRRTHPLAPNGLPLEGIRLE 130 Query: 134 RQMLEELKNSATLCLDTSSMKPVQLKERIVSRFSHLGKSTLSVNITSFGFKYGIPIDADL 193 R++LEELK A + DTS +KP +L+E+I+ +FS + T +VN+ SFGFKYGIPIDADL Sbjct: 131 RKLLEELKGRAQIIYDTSDLKPRELREKILQQFSSHTQQTFTVNVISFGFKYGIPIDADL 190 Query: 194 VFDVRFLPNPHYVDQLRPKTGQDSEVYDYVMKWPETQVFLTKLLDMLHFLIPQYRKEGKS 253 VFDVRFLPNPHY+D +RPKTG D EV YV+KW ETQ FL KL+D+L F++P Y++EGKS Sbjct: 191 VFDVRFLPNPHYIDHMRPKTGLDEEVSSYVLKWSETQKFLEKLIDLLAFMLPHYKREGKS 250 Query: 254 QIIIGIGCTGGKHRSVAISEYLGKMLGVSETEAVAVSHRDSERDR 298 Q++I IGCTGG+HRSVAI+EY+ + S+ VSHRD ER + Sbjct: 251 QLVIAIGCTGGQHRSVAIAEYIARYF--SKDYKTHVSHRDMERRK 293 >Q9K705.1 Y3569_BACHD UPF0042 protein BH3569 Length = 295 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/288 (62%), Positives = 228/288 (79%), Gaps = 6/288 (2%) Query: 14 LIIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSKGKIAKVALVIDLRG 73 ++IITGMSGAGKT+AVQSLEDLG+FCVDNLPP LIPKF ELIE S GK+ K+ALVIDLRG Sbjct: 9 IVIITGMSGAGKTVAVQSLEDLGYFCVDNLPPALIPKFIELIESSSGKMNKLALVIDLRG 68 Query: 74 REFFTALSESLSYIKDESTI---GFEILFLDATDSVLVQRYKESRRHHPLAPKGMPLDGI 130 + FF L ES+ + D+S++ +ILFLDA D+ LVQRYKE+RR HPLA G+PLDGI Sbjct: 69 QTFFDQLFESIDLL-DQSSLSKYNIQILFLDAKDAKLVQRYKETRRSHPLAKHGLPLDGI 127 Query: 131 RLERQMLEELKNSATLCLDTSSMKPVQLKERIVSRFSHLGKSTLSVNITSFGFKYGIPID 190 + ER++LE+LK A +DT+ +KP+QL+E+I+ RFS + +VN+ SFGFKYGIPID Sbjct: 128 KKERELLEDLKGRAQQIIDTTDLKPIQLREKIIQRFSCEEHHSFTVNMMSFGFKYGIPID 187 Query: 191 ADLVFDVRFLPNPHYVDQLRPKTGQDSEVYDYVMKWPETQVFLTKLLDMLHFLIPQYRKE 250 ADLVFDVRFLPNPHYVD LRPKTG + EV YV+KW ETQ F+ KL D+L F++PQY++E Sbjct: 188 ADLVFDVRFLPNPHYVDHLRPKTGLEGEVSSYVLKWTETQQFIEKLEDLLSFMLPQYKRE 247 Query: 251 GKSQIIIGIGCTGGKHRSVAISEYLGKMLGVSETEAVAVSHRDSERDR 298 GKSQ++IGIGCTGGKHRSV ++E+ K+ + + VSHRD E+ + Sbjct: 248 GKSQVVIGIGCTGGKHRSVTLAEHFAKVF--ANEYMMHVSHRDVEKGK 293 >C0Z6P0.1 C0Z6P0_BREBN Putative uncharacterized protein Length = 293 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/298 (61%), Positives = 232/298 (77%), Gaps = 5/298 (1%) Query: 1 MTELEQSPPGGATLIIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSKG 60 MTEL L+IITGMSGAGKT+AVQSLEDLGFFCVDNLPPVLIPKFAEL++QS G Sbjct: 1 MTELGNDK--AMNLLIITGMSGAGKTVAVQSLEDLGFFCVDNLPPVLIPKFAELVKQSGG 58 Query: 61 KIAKVALVIDLRGREFFTALSESLSYIKDESTIGFEILFLDATDSVLVQRYKESRRHHPL 120 I +VALVIDLRGREFF L+ ++ + + + + IL+LDA D LV RYKE+RR HPL Sbjct: 59 SIERVALVIDLRGREFFENLAVTMESLNQMNGLSYHILYLDANDQTLVSRYKETRRRHPL 118 Query: 121 APKGMPLDGIRLERQMLEELKNSATLCLDTSSMKPVQLKERIVSRFSHLGKSTLSVNITS 180 +P G PL+GI ER++LEE+K A +DTS MKPVQL+E+I++++ G S L++N+ S Sbjct: 119 SPNGSPLEGIHAERRLLEEMKGWAHQIIDTSQMKPVQLREKIINQYGQQG-SPLTINVLS 177 Query: 181 FGFKYGIPIDADLVFDVRFLPNPHYVDQLRPKTGQDSEVYDYVMKWPETQVFLTKLLDML 240 FGFKYG PIDADL+FDVRFLPNPHYV+ LRPKTG D +V +YVM+ +T+ FL KL D L Sbjct: 178 FGFKYGAPIDADLMFDVRFLPNPHYVEDLRPKTGCDPDVAEYVMQHKDTKEFLEKLTDFL 237 Query: 241 HFLIPQYRKEGKSQIIIGIGCTGGKHRSVAISEYLGKMLGVSETEAVAVSHRDSERDR 298 + +P Y++EGKSQ++IGIGCTGGKHRSVAI+E+LG+ G + +V VSHRD E+++ Sbjct: 238 GYTLPHYQREGKSQLVIGIGCTGGKHRSVAIAEHLGEAFG--KDFSVRVSHRDMEKNK 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,729,447,423 Number of extensions: 70950714 Number of successful extensions: 220092 Number of sequences better than 1.0e-05: 1089 Number of HSP's gapped: 218208 Number of HSP's successfully gapped: 1089 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)