BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0016.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K381.1 B3K381_9BACI Putative uncharacterized protein 528 e-148 B1DKY2.1 B1DKY2_9BACL Putative uncharacterized protein 459 e-127 C5D7N2.1 C5D7N2_9BACI Putative uncharacterized protein 367 e-100 A7Z952.1 A7Z952_BACA2 YvcK 362 3e-98 C0Z6N9.1 C0Z6N9_BREBN Putative uncharacterized protein yvcK 358 4e-97 >B3K381.1 B3K381_9BACI Putative uncharacterized protein Length = 326 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/302 (83%), Positives = 282/302 (93%) Query: 1 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTAMADVEPLMAQIMRY 60 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTA+ADVEPL++ I++Y Sbjct: 23 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTALADVEPLLSDILKY 82 Query: 61 RFSSGEGLAGHSLGNLILAALTDISGDFVTAVRELSRLFAVRGRVLPAAGEAVVLHAEMA 120 RF +G GLAGHSLGNLILAA+TD+ GDFVTAV+E+SR+F VRG+VLPAAGEAV+LHAEM Sbjct: 83 RFKNGSGLAGHSLGNLILAAMTDLHGDFVTAVKEMSRVFVVRGQVLPAAGEAVILHAEME 142 Query: 121 DGSIITGESKIPEAGGVIKRVFLEPEDVEPLPEALEAIRNADAILCGPGSLYTSILPNLL 180 DG+I+TGESKIPEAG IKR+FLEPE VEPLPEALEAI+ ADAIL GPGSLYTSILPNLL Sbjct: 143 DGTIVTGESKIPEAGRRIKRIFLEPEHVEPLPEALEAIQQADAILIGPGSLYTSILPNLL 202 Query: 181 VPKLAEAIVASDAIKIFVCNVMTQPGETDNYTVSDHLQAVYDHVGLHLFDYVIVNDGEIP 240 VPKLAEAIV+S+AIK+FVCNVMTQPGETDNYTVSDHLQAVYDH+GLHLFDYVIVNDGEIP Sbjct: 203 VPKLAEAIVSSEAIKMFVCNVMTQPGETDNYTVSDHLQAVYDHIGLHLFDYVIVNDGEIP 262 Query: 241 EQVQVKYAEKGARPVQLDREIVDGNGYKVIADKLVLFKTYLRHDTDKLSHHIYQLVQDWT 300 QVQ KYA+KGA+PV LDR+ V GYK+IADKLVLF+TYLRHD DKLS+HI+QLVQDW Sbjct: 263 PQVQDKYAQKGAKPVLLDRDEVTSRGYKLIADKLVLFRTYLRHDADKLSNHIFQLVQDWI 322 Query: 301 SR 302 +R Sbjct: 323 TR 324 >B1DKY2.1 B1DKY2_9BACL Putative uncharacterized protein Length = 307 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/302 (71%), Positives = 265/302 (87%) Query: 1 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTAMADVEPLMAQIMRY 60 MLRGLKEKPLDITAIVTVADDGGSSG+LR+ELQ+PPPGDIRNV+ A+AD EPL+ ++++Y Sbjct: 4 MLRGLKEKPLDITAIVTVADDGGSSGVLRNELQIPPPGDIRNVIMALADAEPLLTEVLQY 63 Query: 61 RFSSGEGLAGHSLGNLILAALTDISGDFVTAVRELSRLFAVRGRVLPAAGEAVVLHAEMA 120 RFSSG GLAGHSLGNL+LAA+TDI+GDFVT VRELS++ AVRGRVLPAAG A+VL AEM Sbjct: 64 RFSSGTGLAGHSLGNLMLAAMTDIAGDFVTGVRELSKVLAVRGRVLPAAGRAIVLKAEMT 123 Query: 121 DGSIITGESKIPEAGGVIKRVFLEPEDVEPLPEALEAIRNADAILCGPGSLYTSILPNLL 180 DG+++ GES IP+AG IKRVF+EP++VEPLPEA+EAI ADAIL GPGSLYTSI+PNLL Sbjct: 124 DGTVVVGESMIPKAGKKIKRVFIEPDNVEPLPEAIEAIEQADAILIGPGSLYTSIIPNLL 183 Query: 181 VPKLAEAIVASDAIKIFVCNVMTQPGETDNYTVSDHLQAVYDHVGLHLFDYVIVNDGEIP 240 VPKLA AI+ S A+K+FVCNVMTQPGETD Y+VSDHL+AV DH+G +FDYV+VNDGEI Sbjct: 184 VPKLARAILESTAVKLFVCNVMTQPGETDGYSVSDHLKAVKDHIGHKIFDYVLVNDGEIS 243 Query: 241 EQVQVKYAEKGARPVQLDREIVDGNGYKVIADKLVLFKTYLRHDTDKLSHHIYQLVQDWT 300 +V KYAE G+ V+LD + V+ GY++I+D+LVL++T+LRHD ++LSHHIY+LV++W Sbjct: 244 PEVAEKYAELGSTQVELDIDEVNRLGYEIISDRLVLYRTFLRHDAERLSHHIYKLVENWM 303 Query: 301 SR 302 R Sbjct: 304 LR 305 >C5D7N2.1 C5D7N2_9BACI Putative uncharacterized protein Length = 323 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/297 (58%), Positives = 238/297 (80%), Gaps = 1/297 (0%) Query: 1 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTAMADVEPLMAQIMRY 60 +LRGLK+ +DITAIVTVADDGGSSG LR EL +PPPGD+RNVL A++DVEPL+ ++ ++ Sbjct: 21 LLRGLKQYAIDITAIVTVADDGGSSGRLRDELDIPPPGDVRNVLAALSDVEPLIVELFQH 80 Query: 61 RFSSGEGLAGHSLGNLILAALTDISGDFVTAVRELSRLFAVRGRVLPAAGEAVVLHAEMA 120 RF +G GL+GHSLGNLILAALT I+GDFV A+RE+S++ V G+VLPAA ++VVLHAEM Sbjct: 81 RFKNGNGLSGHSLGNLILAALTSITGDFVKAIREMSKVLKVHGQVLPAANKSVVLHAEME 140 Query: 121 DGSIITGESKIPEAGGVIKRVFLEPEDVEPLPEALEAIRNADAILCGPGSLYTSILPNLL 180 DG I++GESKIP +G IK+VFL PE++EPLPE +EAIR+AD I+ GPGSLYTSILPNLL Sbjct: 141 DGVIVSGESKIPYSGKRIKKVFLTPENIEPLPETIEAIRSADLIVIGPGSLYTSILPNLL 200 Query: 181 VPKLAEAIVASDAIKIFVCNVMTQPGETDNYTVSDHLQAVYDHVGLHLFDYVIVNDGEIP 240 VPK+ + + + A K+++CNVMTQ GET +YTVSDH++A++DH+G D V+VN+G IP Sbjct: 201 VPKIGQEVCQAKAKKVYICNVMTQAGETLHYTVSDHVKALHDHMGCLFLDVVVVNNGHIP 260 Query: 241 EQVQVKYAEKGARPVQLDREIVDGNGYKVIADKLVLFKTY-LRHDTDKLSHHIYQLV 296 E++Q +YAE+ A PV+ D + + G +VI D +V ++ + +RHDT K++ + L+ Sbjct: 261 EEIQKRYAEELAEPVKDDSDRLIDLGIQVIRDNIVSYEDHVIRHDTKKVASLLISLI 317 >A7Z952.1 A7Z952_BACA2 YvcK Length = 317 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 171/299 (57%), Positives = 231/299 (77%), Gaps = 1/299 (0%) Query: 1 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTAMADVEPLMAQIMRY 60 +LRGLK KP+DITAIVTVADDGGSSG LR ELQ+PPPGDIRNVL A++DVEPL+ + ++ Sbjct: 19 LLRGLKHKPVDITAIVTVADDGGSSGRLRDELQIPPPGDIRNVLAALSDVEPLVENLFQH 78 Query: 61 RFSSGEGLAGHSLGNLILAALTDISGDFVTAVRELSRLFAVRGRVLPAAGEAVVLHAEMA 120 RF+ G L GHSLGNLILAA+T+I+GDF AV E+S++ VRGRVLPAA +VVLHAEM Sbjct: 79 RFNKGSDLTGHSLGNLILAAMTNITGDFFHAVTEMSKVLNVRGRVLPAANTSVVLHAEME 138 Query: 121 DGSIITGESKIPEAGGVIKRVFLEPEDVEPLPEALEAIRNADAILCGPGSLYTSILPNLL 180 DG +++GES IP G IKRVFL PE ++PLPE ++ IR AD I+ GPGSLYTSILPNLL Sbjct: 139 DGQVVSGESTIPSYGQRIKRVFLTPEKIDPLPETIDVIRQADLIIIGPGSLYTSILPNLL 198 Query: 181 VPKLAEAIVASDAIKIFVCNVMTQPGETDNYTVSDHLQAVYDHVGLHLFDYVIVNDGEIP 240 VPK+ E +V + A K+++CNVMTQPGET Y+ +DH++A+ DH+ D +++N+ EIP Sbjct: 199 VPKIGEEVVKAAAKKVYICNVMTQPGETLQYSAADHVKALNDHMEQPFIDTILINNEEIP 258 Query: 241 EQVQVKYAEKGARPVQLDREIVDGNGYKVIADKLVLFKT-YLRHDTDKLSHHIYQLVQD 298 ++++ KYA++ ARPV + E + G +VI D+++ +K +RHDT K++ + L++D Sbjct: 259 DEIKSKYAKELARPVDFNVEKLKSMGLEVIRDQIITYKNGVIRHDTHKVASLLVDLLRD 317 >C0Z6N9.1 C0Z6N9_BREBN Putative uncharacterized protein yvcK Length = 336 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 181/298 (60%), Positives = 224/298 (75%), Gaps = 1/298 (0%) Query: 1 MLRGLKEKPLDITAIVTVADDGGSSGILRSELQMPPPGDIRNVLTAMADVEPLMAQIMRY 60 +LRGLK +P+ ITAIVTVADDGGSSG LR E+ M PPGDIRNVLTA+AD EPLM ++M+Y Sbjct: 28 LLRGLKHEPVHITAIVTVADDGGSSGRLREEMDMLPPGDIRNVLTALADTEPLMEKVMQY 87 Query: 61 RFSSGEGLAGHSLGNLILAALTDISGDFVTAVRELSRLFAVRGRVLPAAGEAVVLHAEMA 120 RFS+G GLAGH+LGNL+LAA+ +I+GDFVTAV+ LS + AVRG VLPA+ +++ L AEM Sbjct: 88 RFSTGTGLAGHNLGNLLLAAMNEITGDFVTAVKTLSGVLAVRGDVLPASTQSIQLKAEMT 147 Query: 121 DGSIITGESKIPEAGGVIKRVFLEPEDVEPLPEALEAIRNADAILCGPGSLYTSILPNLL 180 DGS++ GES+IP G IKRVFL+PED PL EAL AI +ADAIL GPGSLYTSILPNLL Sbjct: 148 DGSLVIGESQIPLTGKEIKRVFLDPEDAVPLSEALMAIADADAILIGPGSLYTSILPNLL 207 Query: 181 VPKLAEAIVASDAIKIFVCNVMTQPGETDNYTVSDHLQAVYDHVGLHLFDYVIVNDGEIP 240 V L EAI + A KI++CNVMTQPGETD ++ S H+ +Y+HV D +IVN E+P Sbjct: 208 VRGLFEAITCAQAPKIYICNVMTQPGETDGFSASRHVNVMYEHVDKPFLDTIIVNSAELP 267 Query: 241 EQVQVKYAEKGARPVQLDREIVDGNGYKVIADKLVLFKT-YLRHDTDKLSHHIYQLVQ 297 V KYAEKGA PV+ D + + G V+A LV F+ YLRHD +S + LV+ Sbjct: 268 THVLDKYAEKGAAPVRCDSKRLRQLGLHVVAKPLVTFEDGYLRHDAHAVSKQVVSLVK 325 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,837,796,134 Number of extensions: 77691024 Number of successful extensions: 203052 Number of sequences better than 1.0e-05: 787 Number of HSP's gapped: 201671 Number of HSP's successfully gapped: 787 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)