BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0015.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K382.1 B3K382_9BACI Putative uncharacterized protein 567 e-160 C0Z6N8.1 WHIA_BREBN Putative sporulation transcription regulator... 454 e-126 A8W0U4.1 A8W0U4_9BACI FeS assembly ATPase SufC 440 e-122 B7GL36.1 WHIA_ANOFW Putative sporulation transcription regulator... 436 e-120 Q2B711.1 Q2B711_9BACI Putative uncharacterized protein 435 e-120 >B3K382.1 B3K382_9BACI Putative uncharacterized protein Length = 312 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 272/312 (87%), Positives = 297/312 (95%) Query: 4 VSPLSFAALTKKELTMVESQPCCEKAEMSALIRMNGSVQLSSKKVVLDISTENAAIARRV 63 +S LSFAA TKKELTM+ESQ CCEKAE+SALIRMNGSVQLS+KKV+LDISTENAAIARR+ Sbjct: 1 MSTLSFAAQTKKELTMIESQSCCEKAELSALIRMNGSVQLSNKKVILDISTENAAIARRI 60 Query: 64 YSLLKKYYQVHIELLVRKKMRLKKNNVYIVRIPSRVQEILKDLRIVSEGFIFTDGIDPEI 123 YSL+KK++Q H ELLVRKKMRLKKNNVYIVRIP++VQEILK+LRIVSEGF+F ID +I Sbjct: 61 YSLIKKHFQAHTELLVRKKMRLKKNNVYIVRIPAQVQEILKELRIVSEGFLFQSRIDEQI 120 Query: 124 IGKNCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCKALVELAGEFHLNARCIER 183 + KNCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHC++LV+LA EFHLNARCIER Sbjct: 121 VRKNCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCQSLVDLANEFHLNARCIER 180 Query: 184 KKGFILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTISA 243 KKGFI YIKEGEKIIEFL+LIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTI A Sbjct: 181 KKGFIFYIKEGEKIIEFLNLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTIGA 240 Query: 244 AVRQIENIKLLQREVGLESLPDKLREVAEIRLAHPDINLKEVGEMLKGTVSKSGVNHRLR 303 AVRQIENIKLLQ+EVGLE+LPDKLREVAEIRLAHPD+NLKEVGE+LKGTVSKSGVNHRLR Sbjct: 241 AVRQIENIKLLQKEVGLENLPDKLREVAEIRLAHPDMNLKEVGELLKGTVSKSGVNHRLR 300 Query: 304 KIDELADKVRGG 315 KIDELA+K+R Sbjct: 301 KIDELAEKIRNA 312 >C0Z6N8.1 WHIA_BREBN Putative sporulation transcription regulator whiA Length = 315 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/308 (68%), Positives = 267/308 (86%), Gaps = 1/308 (0%) Query: 7 LSFAALTKKELTMVESQPCCEKAEMSALIRMNGSVQLSSKKVVLDISTENAAIARRVYSL 66 +SFAA TKKELTM+E CC KAE+SALIRMNGS+Q + ++VLD++TENAAIARR+Y+L Sbjct: 1 MSFAAHTKKELTMMEGADCCSKAELSALIRMNGSLQFGAGRLVLDVTTENAAIARRIYTL 60 Query: 67 LKKYYQVHIELLVRKKMRLKKNNVYIVRIPSRVQEILKDLRIVSEGFIFTDGIDPEIIGK 126 +K+ +Q+H ELLVRKKMRLKKNNVYIVRIP++ EIL+DL I+ + F GI PEI+ K Sbjct: 61 IKRLFQIHAELLVRKKMRLKKNNVYIVRIPNKANEILQDLGIMDQSLSFIPGIAPEIVKK 120 Query: 127 NCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCKALVELAGEFHLNARCIERKKG 186 +CC+ AYLRGAF+AGGSVN+PE SSYHLEI + Y++ C+AL ++A + LNA+CIERKKG Sbjct: 121 SCCRAAYLRGAFLAGGSVNHPEASSYHLEIFTSYQDFCEALTKIANRYKLNAKCIERKKG 180 Query: 187 FILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTISAAVR 246 ++LYIKEGEKI EFLSLIGAHQAL FEDVRI++DMRNSVNR+ NCE AN+NKT++AA R Sbjct: 181 YVLYIKEGEKITEFLSLIGAHQALLYFEDVRIVKDMRNSVNRLHNCEIANINKTVNAATR 240 Query: 247 QIENIKLLQREVGLESLPDKLREVAEIRLAHPDINLKEVGEML-KGTVSKSGVNHRLRKI 305 Q+ENI+L+ +E+GLE+LP +LREVAE+R+AHPDINLKE+GEM+ G VSKSG+NHRLRKI Sbjct: 241 QMENIQLIDQEMGLENLPKRLREVAELRVAHPDINLKELGEMVPSGVVSKSGINHRLRKI 300 Query: 306 DELADKVR 313 +E+ADK+R Sbjct: 301 NEIADKIR 308 >A8W0U4.1 A8W0U4_9BACI FeS assembly ATPase SufC Length = 315 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/309 (66%), Positives = 265/309 (85%) Query: 7 LSFAALTKKELTMVESQPCCEKAEMSALIRMNGSVQLSSKKVVLDISTENAAIARRVYSL 66 +SFA++TKKELT +ES CC KAE++A+IRMNGSV + + +V LD+ TENAAIARR+Y+L Sbjct: 1 MSFASVTKKELTQLESDECCAKAELAAMIRMNGSVHIRNMQVSLDVQTENAAIARRIYTL 60 Query: 67 LKKYYQVHIELLVRKKMRLKKNNVYIVRIPSRVQEILKDLRIVSEGFIFTDGIDPEIIGK 126 LKK YQVH+ELLVRKKMRLKKNNVY+VRI + +L+DL+IV + F FT ID E++ K Sbjct: 61 LKKVYQVHVELLVRKKMRLKKNNVYVVRIGREARGLLEDLKIVDDTFSFTRHIDRELVRK 120 Query: 127 NCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCKALVELAGEFHLNARCIERKKG 186 +CCKRAYLRGAF+AGGSVN+PE SSYHLEI S YEEH ++L++L F + A+ IERKKG Sbjct: 121 DCCKRAYLRGAFLAGGSVNHPETSSYHLEIFSFYEEHNESLLQLLDYFGIKAKMIERKKG 180 Query: 187 FILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTISAAVR 246 F+LY+KEGE+I EFL+++GAHQAL KFEDVRIM+DMRNSVNR+VNCETANLNKT+ AA+R Sbjct: 181 FVLYLKEGERISEFLNVVGAHQALLKFEDVRIMKDMRNSVNRLVNCETANLNKTVGAAMR 240 Query: 247 QIENIKLLQREVGLESLPDKLREVAEIRLAHPDINLKEVGEMLKGTVSKSGVNHRLRKID 306 Q+ENI L++ VGL+ LP++L+E+A++R+ H DI+LKE+GEML+G VSKSGVNHR+RKI+ Sbjct: 241 QVENIILIRNTVGLDQLPERLQEIAKLRIEHQDISLKELGEMLEGKVSKSGVNHRMRKIE 300 Query: 307 ELADKVRGG 315 E A+++R G Sbjct: 301 EFANQIREG 309 >B7GL36.1 WHIA_ANOFW Putative sporulation transcription regulator whiA Length = 323 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/314 (65%), Positives = 262/314 (83%), Gaps = 2/314 (0%) Query: 4 VSPLSFAALTKKELTMVESQPCCEKAEMSALIRMNGSVQLSSKKVVLDISTENAAIARRV 63 + LSFA+ TKKELT +E +PCC KAE+SALIRMNGS+ S+++++L+I TENAAIARR+ Sbjct: 1 MGSLSFASETKKELTGIEVKPCCLKAELSALIRMNGSISFSNRRLLLNIQTENAAIARRI 60 Query: 64 YSLLKKYYQVHIELLVRKKMRLKKNNVYIVRIPSRVQEILKDLRIVSEGFIFTDGIDPEI 123 Y+LLKK Y V +ELLVRKKMRLKKNNVYIVR+ E+L DL+I+ EGF F I PE+ Sbjct: 61 YTLLKKGYDVVVELLVRKKMRLKKNNVYIVRVVEGTHELLSDLKIMEEGFSFVHAISPEL 120 Query: 124 IGKNCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCKALVELAG-EFHLNARCIE 182 + K CCKR+YLRGAF+AGGSVNNPE SSYHLEI S+Y EH ++L EL FHL+AR +E Sbjct: 121 VQKKCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYREHNESLCELMNTSFHLHARTLE 180 Query: 183 RKKGFILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTIS 242 RKKGFI Y+KE EKI EFLS+IGAHQAL +FEDVRI+RDMRNSVNR+VNCETANLNKTI Sbjct: 181 RKKGFITYLKEAEKIAEFLSVIGAHQALLRFEDVRIVRDMRNSVNRLVNCETANLNKTIG 240 Query: 243 AAVRQIENIKLLQREVGLESLPDKLREVAEIRLAHPDINLKEVGEMLK-GTVSKSGVNHR 301 AA+RQ+ENI+ + +GL+ LP+KLRE+A++R+A+ D+ LKE+GEM+ G +SKSG+NHR Sbjct: 241 AALRQVENIRYIDETIGLDQLPEKLREIAKLRIAYQDVTLKELGEMVSGGKISKSGINHR 300 Query: 302 LRKIDELADKVRGG 315 LRK+DE+A+++R G Sbjct: 301 LRKLDEIAERLRAG 314 >Q2B711.1 Q2B711_9BACI Putative uncharacterized protein Length = 316 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/310 (66%), Positives = 261/310 (84%), Gaps = 1/310 (0%) Query: 7 LSFAALTKKELTMVESQPCCEKAEMSALIRMNGSVQLSSKKVVLDISTENAAIARRVYSL 66 +SFA+ TKKELT +E + CC KAE+SALIRMNGS+ SS+K+++DI TENAAIARR+Y+L Sbjct: 1 MSFASETKKELTNLEVKDCCGKAELSALIRMNGSLSFSSRKLIVDIQTENAAIARRIYTL 60 Query: 67 LKKYYQVHIELLVRKKMRLKKNNVYIVRIPSRVQEILKDLRIVSEGFIFTDGIDPEIIGK 126 KK Y V +ELLVRKKMRLKKNNVYIVR+ + QEIL DL+I+ EGF FT I E++ K Sbjct: 61 TKKNYTVQVELLVRKKMRLKKNNVYIVRLAQQAQEILADLKILKEGFDFTHDISEELVKK 120 Query: 127 NCCKRAYLRGAFMAGGSVNNPEGSSYHLEIASMYEEHCKALVELAGEFHLNARCIERKKG 186 CCKR+YLRGAF+AGGSVNNPE SSYHLEI S+Y+EH +L EL F LN++ +ERKKG Sbjct: 121 KCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYKEHNDSLCELMNTFGLNSKTLERKKG 180 Query: 187 FILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTISAAVR 246 +I Y+KE EKI EFL++IGAH AL +FED+RI+RDMRNSVNR+VNCETANLNKTI AA+R Sbjct: 181 YITYLKEAEKITEFLNIIGAHGALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAALR 240 Query: 247 QIENIKLLQREVGLESLPDKLREVAEIRLAHPDINLKEVGEMLKGT-VSKSGVNHRLRKI 305 Q+ENI+ ++ VGL+ LP+KLRE+AE+R+A+ D+ LKE+GEM+ G+ +SKSG+NHRLRKI Sbjct: 241 QVENIRYIKDTVGLDILPEKLREIAELRVAYQDVTLKELGEMVSGSHISKSGINHRLRKI 300 Query: 306 DELADKVRGG 315 DE+A+K+R G Sbjct: 301 DEIAEKLRLG 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,641,711,091 Number of extensions: 63653307 Number of successful extensions: 183419 Number of sequences better than 1.0e-05: 562 Number of HSP's gapped: 182351 Number of HSP's successfully gapped: 562 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)