BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0014.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K383.1 B3K383_9BACI Phosphocarrier, HPr family                      125   8e-28
B1DKY5.1 B1DKY5_9BACL Phosphotransferase system, phosphocarrier ...   122   7e-27
C0Z6N7.1 C0Z6N7_BREBN HPr-like protein Crh                            103   7e-21
A6CNE8.1 A6CNE8_9BACI Catabolite repression HPr-like protein           94   3e-18
B1HVQ9.1 B1HVQ9_LYSSC HPr-like protein crh (Catabolite repressio...    94   3e-18

>B3K383.1 B3K383_9BACI Phosphocarrier, HPr family
          Length = 89

 Score =  125 bits (315), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 68/69 (98%)

Query: 1  LFVQEANKFSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEIFISADGADADQAVTALTSL 60
          LFVQEANK+SSEIFVEKDDKKVNAKSIMGIMSLAISSGTE++ISA+GADA+QAVT+L +L
Sbjct: 21 LFVQEANKYSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEVYISAEGADAEQAVTSLVNL 80

Query: 61 VSKEELENQ 69
          VSKEELENQ
Sbjct: 81 VSKEELENQ 89


>B1DKY5.1 B1DKY5_9BACL Phosphotransferase system, phosphocarrier protein
          HPr
          Length = 89

 Score =  122 bits (307), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 66/69 (95%)

Query: 1  LFVQEANKFSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEIFISADGADADQAVTALTSL 60
          LFVQEANKFSSE+FVEKDDKKVNAKSIMGIMSLAISSGTEI ISA+G+DA+QAV AL +L
Sbjct: 21 LFVQEANKFSSEVFVEKDDKKVNAKSIMGIMSLAISSGTEIHISAEGSDAEQAVNALVAL 80

Query: 61 VSKEELENQ 69
          VSKEELENQ
Sbjct: 81 VSKEELENQ 89


>C0Z6N7.1 C0Z6N7_BREBN HPr-like protein Crh
          Length = 85

 Score =  103 bits (256), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 59/65 (90%)

Query: 1  LFVQEANKFSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEIFISADGADADQAVTALTSL 60
           FVQEAN+F+SE+FVEK +KKVNAKSIMGIMSLAISSGTEI I A+G DA QAV++LT+L
Sbjct: 21 FFVQEANRFASEVFVEKGNKKVNAKSIMGIMSLAISSGTEITILAEGPDASQAVSSLTNL 80

Query: 61 VSKEE 65
          VSKEE
Sbjct: 81 VSKEE 85


>A6CNE8.1 A6CNE8_9BACI Catabolite repression HPr-like protein
          Length = 85

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 54/64 (84%)

Query: 1  LFVQEANKFSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEIFISADGADADQAVTALTSL 60
          LFVQEAN+FSSE+F+E++ KKVNAKSIMG+MSLA+SSGTEI + ADG D +QAV  LT  
Sbjct: 21 LFVQEANRFSSEVFLERNGKKVNAKSIMGLMSLAVSSGTEITLIADGTDEEQAVKHLTEF 80

Query: 61 VSKE 64
          V KE
Sbjct: 81 VQKE 84


>B1HVQ9.1 B1HVQ9_LYSSC HPr-like protein crh (Catabolite repression HPr)
          Length = 85

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 59/65 (90%)

Query: 1  LFVQEANKFSSEIFVEKDDKKVNAKSIMGIMSLAISSGTEIFISADGADADQAVTALTSL 60
          LFVQEAN+FS++IF+EKD+KKVNAKSIMG+MSLA++ GTE+ +S++G DA+QAVTAL ++
Sbjct: 21 LFVQEANRFSADIFLEKDEKKVNAKSIMGVMSLAVAKGTEVTLSSEGNDAEQAVTALATI 80

Query: 61 VSKEE 65
          +  E+
Sbjct: 81 IENED 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.124    0.304 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 302,160,985
Number of extensions: 7646362
Number of successful extensions: 21538
Number of sequences better than 1.0e-05: 645
Number of HSP's gapped: 21679
Number of HSP's successfully gapped: 645
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)