BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0013.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K389.1 B3K389_9BACI Putative uncharacterized protein 190 7e-47 B9MK62.1 B9MK62_ANATD Putative uncharacterized protein 81 6e-14 Q11GK9.1 Q11GK9_MESSB Putative uncharacterized protein 81 9e-14 C1TI64.1 C1TI64_9FIRM Uncharacterized conserved protein 80 2e-13 B4SR06.1 B4SR06_STRM5 Putative uncharacterized protein 76 2e-12 >B3K389.1 B3K389_9BACI Putative uncharacterized protein Length = 253 Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 140/227 (61%), Gaps = 2/227 (0%) Query: 2 IQGPEKAYAAEDVQRNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXX 61 + G + +AAE Q+N+++V+GKGE+S+KPD+VYLSIG + A +A+ AQ Sbjct: 27 LSGATEVHAAEAAQQNLLTVLGKGEISVKPDIVYLSIGAESYAETAKSAQKSNALKMDKI 86 Query: 62 XTLLKTTWGIADKDIQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLD 121 LLK TW I DKDI++ QF VQPNYTYS++ G+++K Y A HSL+VT RDL+KVG LLD Sbjct: 87 TKLLKETWKIDDKDIKTEQFYVQPNYTYSDENGRKVKNYTAYHSLEVTLRDLSKVGDLLD 146 Query: 122 XXXXXXXXXXXXTQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQND 181 +F++EN A EAQVI+KAM R LG V+ + + Sbjct: 147 AASDAGANSIGNARFSVENRDAFEAQVIDKAMANADLKAQAMAKASKRQLGIVLNIVEGS 206 Query: 182 DGNNPVVYMENAAM-AKSV-ADAAGGTYVEPGEVRVSTQLSVMYELK 226 G + + +E M A+SV ADA T V+PGE+++STQL V Y+LK Sbjct: 207 VGVDTIYGLEKMQMEAQSVAADAGANTSVKPGEIKISTQLYVQYQLK 253 >B9MK62.1 B9MK62_ANATD Putative uncharacterized protein Length = 241 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 19 VSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWGIADKDIQS 78 ++V G+ L ++PD+ L+ GV + SA+ A +K GI KDI++ Sbjct: 41 ITVKGQASLYVEPDIAILTFGVLSEDISADTAYSLTSTKINKTIEGIKK-LGIDSKDIKT 99 Query: 79 TQFIVQPNYTYSEKEG-QQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXXXXXTQFA 137 + V P Y+Y++ +G +I G+ A L VT R+L+ VG+++D F Sbjct: 100 LRINVYPKYSYNKDDGASKIVGFYASTDLTVTVRNLSLVGKVIDTAFKNGVNTFSGLTFD 159 Query: 138 IENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQNDDGNN-PVVYMENAAMA 196 I N S Q + KA+ SLG+ +VT+N NN P+VY + AMA Sbjct: 160 ISNSSPYYNQALSKALENAKQKAATIAKGLGISLGKPKSVTENSYVNNPPIVYYKAEAMA 219 Query: 197 KSVADAAGGTYVEPGEVRVSTQLSVMY 223 S + T ++PG + + +++++Y Sbjct: 220 SSTS-----TQIQPGTIEIKAEVTLVY 241 >Q11GK9.1 Q11GK9_MESSB Putative uncharacterized protein Length = 242 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 8/212 (3%) Query: 19 VSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWGIADKDIQS 78 +SV G+G+ ++ PD+ +++ V AA+A EA LK GIA++D+Q+ Sbjct: 31 ISVTGEGKANVAPDMAVINLAVVREAATAREAMDANNQAMVAVIAALKEA-GIAERDLQT 89 Query: 79 TQFIVQPNYTY-----SEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXXXXX 133 + ++P Y Y EKE +I GY + L V RDL +VG++LD Sbjct: 90 SGLSIEPRYVYPNDQNGEKE-PRITGYQVTNGLTVRIRDLKRVGEILDRSVTLGVNQGGY 148 Query: 134 TQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQNDDGNNPVVYMENA 193 F ++PSA ++A+ LG V+ +++N G P + A Sbjct: 149 ISFTNDDPSAAMNDARKRAVEDAISKARTLAEAAGVKLGDVVQISENMVGTPPPRPL-GA 207 Query: 194 AMAKSVADAAGGTYVEPGEVRVSTQLSVMYEL 225 M + AD A VE GE + Q+++ YEL Sbjct: 208 KMMRMEADQAVSVPVEAGESTYTVQVNITYEL 239 >C1TI64.1 C1TI64_9FIRM Uncharacterized conserved protein Length = 236 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 16/219 (7%) Query: 11 AEDVQRNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTLLKTTWG 70 AE++ NV++V G+G + PD +++GV A +A +AQ L + G Sbjct: 25 AEEIDTNVINVSGQGSVKAAPDRAAVTLGVITEAQTAHQAQSDNAQKVDTAVKALINS-G 83 Query: 71 IADKDIQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXXXXXXXX 130 IA+ DI++ + ++PNY Y EKE +I YI ++++ +T ++ +VG +LD Sbjct: 84 IAESDIKTKNYSLRPNYVYPEKEAPKIVSYIVENNIMITVKNTEQVGNILDVAVKSGVNQ 143 Query: 131 XXXTQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLGQVITVTQNDDGN------ 184 F +EN L+ Q ++KA+ +LG+ IT ++ G+ Sbjct: 144 VNSINFYVENDQVLKVQALQKAVADARAKADVLAA----ALGKKITGVKSASGSWNTNIP 199 Query: 185 NPVVYMENAAMAKSVADAAGGTYVEPGEVRVSTQLSVMY 223 P+ + ++ A A + PGE ++ ++Y Sbjct: 200 GPIYFSKDMA-----AGYGSSNSINPGESEIAATADIVY 233 >B4SR06.1 B4SR06_STRM5 Putative uncharacterized protein Length = 245 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 11/225 (4%) Query: 5 PEKAYAAEDVQRNVVSVIGKGELSLKPDVVYLSIGVNATAASAEEAQXXXXXXXXXXXTL 64 P A + ++++ E + PDV LS GV AA A Sbjct: 26 PSSPSIAAPAEGTLLNISANAEATRVPDVATLSAGVVTQAADGNSAMRQNAQQMDKVLAA 85 Query: 65 LKTTWGIADKDIQSTQFIVQPNYTYSEKEGQQIKGYIAQHSLKVTYRDLNKVGQLLDXXX 124 +K GIA++D+Q++ + P Y Y++ E +I GY A +++ + RD+ K+G++LD Sbjct: 86 IKAA-GIAERDVQTSGVSLNPQYRYADNEAPKITGYQASNTVSLKVRDIAKLGKVLDALA 144 Query: 125 XXXXXXXXXTQFAIENPSALEAQVIEKAMXXXXXXXXXXXXXXXRSLG----QVITVTQN 180 F I+ P V ++A +SLG +++++++N Sbjct: 145 AQGANQINGPSFEIDQPE----PVYDEARLAALKKAQARAQTYAKSLGLQVRRIVSISEN 200 Query: 181 DDGNNPVVYMENAAMAKSVADAAGGTYVEPGEVRVSTQLSVMYEL 225 G + M A A + D A T V PGE VS L V++EL Sbjct: 201 AGGGYRPMPMMRAMSAGAAMDKA--TPVAPGESTVSVNLDVVFEL 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 959,384,062 Number of extensions: 27808658 Number of successful extensions: 49099 Number of sequences better than 1.0e-05: 418 Number of HSP's gapped: 48784 Number of HSP's successfully gapped: 418 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)