BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0010.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K396.1 B3K396_9BACI ATP-dependent Clp protease proteolytic sub... 367 e-100 B1DKY6.1 B1DKY6_9BACL ATP-dependent Clp protease proteolytic sub... 349 6e-95 C0Z6N4.1 C0Z6N4_BREBN ATP-dependent Clp protease proteolytic sub... 333 6e-90 B0A764.1 B0A764_9CLOT ATP-dependent Clp protease proteolytic sub... 326 7e-88 Q9K709.1 CLPP1_BACHD ATP-dependent Clp protease proteolytic subu... 323 4e-87 >B3K396.1 B3K396_9BACI ATP-dependent Clp protease proteolytic subunit Length = 198 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/198 (87%), Positives = 191/198 (96%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 +S+IPMVVEQSNRGERAYDIYSRLLKDRIIFLG++VNDVVANSIIAQMLFL+AEDP+KDI Sbjct: 1 MSFIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 HLY+NSPGGSITAGMAIFDTMQ+IKPDVSTICVGMAASMGAFLLNAGAKGKR+ LPNSEI Sbjct: 61 HLYINSPGGSITAGMAIFDTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEI 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQATDIEIRARRILK+RDKLN IL+ERTGQPLERIEKDTDRDYFM+A +A Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMTADEA 180 Query: 181 AEYGIVDKVIEKTLPSGV 198 EYG++D+V+E T P G+ Sbjct: 181 KEYGLIDQVLENTPPQGL 198 >B1DKY6.1 B1DKY6_9BACL ATP-dependent Clp protease proteolytic subunit Length = 195 Score = 349 bits (896), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 165/192 (85%), Positives = 185/192 (96%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++++PMV+EQSNRGERAYDIYSRLLKDRIIFLG+ VNDVVANSIIAQMLFLAAEDP+KDI Sbjct: 3 MNFVPMVIEQSNRGERAYDIYSRLLKDRIIFLGSGVNDVVANSIIAQMLFLAAEDPEKDI 62 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQYIKPDVSTICVGMAASMGAFLL AGA GKR+ALPNSE+ Sbjct: 63 SLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEV 122 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGA+GQA+DIEIRARRI+K+RDKLN ILAER+GQPLERIEKDTDRDYFMSA +A Sbjct: 123 MIHQPLGGAEGQASDIEIRARRIIKMRDKLNGILAERSGQPLERIEKDTDRDYFMSAEEA 182 Query: 181 AEYGIVDKVIEK 192 +YG+VDKVIE+ Sbjct: 183 RQYGLVDKVIER 194 >C0Z6N4.1 C0Z6N4_BREBN ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 198 Score = 333 bits (854), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 154/190 (81%), Positives = 176/190 (92%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRIIFLGT +ND VAN ++AQ+LFL AEDP+KDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 HLY+NSPGGSITAGMAI+DTM +IKPDVSTIC+GMAASMGAFLL AGAKGKRFALPNSE+ Sbjct: 61 HLYINSPGGSITAGMAIYDTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQA+DIEI A+RILK+RD LN ILAERTGQPLERI+KDTDRD F+SA +A Sbjct: 121 MIHQPLGGAQGQASDIEIAAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAAEA 180 Query: 181 AEYGIVDKVI 190 EYG++DKVI Sbjct: 181 VEYGLIDKVI 190 >B0A764.1 B0A764_9CLOT ATP-dependent Clp protease proteolytic subunit Length = 193 Score = 326 bits (836), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 177/192 (92%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ +P VVEQ+ RGERAYDIYSRLLKDRIIFL EVND A+ ++AQ+LFL AEDPDKDI Sbjct: 1 MALVPTVVEQTGRGERAYDIYSRLLKDRIIFLSDEVNDTTASLVVAQLLFLEAEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 HLY+NSPGGS+TAGMAI+DTMQYIKPDVSTIC+GMAASMGAFLLNAGAKGKRFALPNSEI Sbjct: 61 HLYINSPGGSVTAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEI 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGA+GQATDIEI A+ ILK++++LN IL+ERTGQP+E+I++DT+RD FMSA +A Sbjct: 121 MIHQPLGGAKGQATDIEIHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQEA 180 Query: 181 AEYGIVDKVIEK 192 EYG++D+VIEK Sbjct: 181 KEYGLIDEVIEK 192 >Q9K709.1 CLPP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 EC=3.4.21.92 Length = 194 Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 152/193 (78%), Positives = 174/193 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LGT ++D VANSI+AQ+LFL AEDPDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQYIKP+VSTIC+GMAASMGAFLL AGAKGKRFALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGG +GQA+DIEI RRIL++R+ LN ILAERTGQPLE+I KDTDRD FM+A A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 181 AEYGIVDKVIEKT 193 EYG++DKVIE T Sbjct: 181 REYGLIDKVIETT 193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,131,283,464 Number of extensions: 44807180 Number of successful extensions: 113685 Number of sequences better than 1.0e-05: 2883 Number of HSP's gapped: 112766 Number of HSP's successfully gapped: 2884 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)