BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0009.p (350 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K397.1 B3K397_9BACI Putative sugar-binding domain protein 489 e-136 B1DKY7.1 B1DKY7_9BACL Transcriptional regulator, DeoR family 412 e-113 C0Z6L9.1 C0Z6L9_BREBN Central glycolytic genes regulator 328 5e-88 C5D7M6.1 C5D7M6_9BACI Transcriptional regulator, DeoR family 311 5e-83 A4ISP9.1 A4ISP9_GEOTN Transcriptional regulator 299 3e-79 >B3K397.1 B3K397_9BACI Putative sugar-binding domain protein Length = 347 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 244/344 (70%), Positives = 287/344 (83%), Gaps = 1/344 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MRNLLEIQ+QLLPDLM+TLKRRYTILHQI LS I+GRRTLA+SL MTERVLRAETDLLK+ Sbjct: 1 MRNLLEIQEQLLPDLMDTLKRRYTILHQIKLSGIVGRRTLASSLSMTERVLRAETDLLKA 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 QGLIEIE++GMR+S +G LL+ LEP+ LFGL +LEEKIR YGL KV+++PGD E+S Sbjct: 61 QGLIEIETLGMRISGSGICLLEELEPVMNELFGLVELEEKIRQAYGLRKVVIIPGDSESS 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLT-LPIPLSYKNAWVVPARGG 179 P KRELGRAGA+ LL ++ DT+AVTGGSTLAE+A+Q++ LP + W VPARGG Sbjct: 121 PEVKRELGRAGARTLLNFVQDGDTIAVTGGSTLAEVAEQMSSLPGGEPLTSTWFVPARGG 180 Query: 180 LGESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXX 239 LGESMEIQANTIAS MAKR+GA YRLLHVPDLLSEDAYQSL D +I EIV Sbjct: 181 LGESMEIQANTIASKMAKRVGAEYRLLHVPDLLSEDAYQSLVQDQHIQEIVDVIRRSRVI 240 Query: 240 VHGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIR 299 +HGIGDAMEM RRRKLDE +I +Q +GA+AESFGYYF+E+G+VVH MLT+GLRLEDI+R Sbjct: 241 IHGIGDAMEMARRRKLDEGSIRNLQADGAIAESFGYYFSEDGEVVHKMLTLGLRLEDIMR 300 Query: 300 TEVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEIGKEID 343 TE +IGIAGG+ K KAIHA+L+FG EDILVTDEAAA+E+ KEID Sbjct: 301 TETIIGIAGGQGKGKAIHAVLKFGHEDILVTDEAAALEVEKEID 344 >B1DKY7.1 B1DKY7_9BACL Transcriptional regulator, DeoR family Length = 348 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/349 (60%), Positives = 274/349 (78%), Gaps = 2/349 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MR+++E+Q+QLLPDL++ +K+RY+IL Q+MLSD+IGRRTLA SL MTERVLRAETD LKS Sbjct: 1 MRHIIELQQQLLPDLLDVMKKRYSILRQVMLSDLIGRRTLANSLGMTERVLRAETDFLKS 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 QGL+EI + GMR+S+AG++LL+ LEP K+LFGL DLEEKIR+ +GL++VI+V GD E S Sbjct: 61 QGLLEIHTAGMRISEAGKQLLEQLEPFYKTLFGLSDLEEKIRSHFGLSQVIIVAGDSEES 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 +KRELGRA + L V+ D VAVTGG+T+A++A+QLT PL KN W VPARGGL Sbjct: 121 EQSKRELGRAACQVLRKVMEPNDVVAVTGGTTIAQVANQLTSTTPL--KNNWFVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GES++ QANTIASTMAKR GANYR+LHVPD L ++AY S+ + NI +IV+ V Sbjct: 179 GESLDYQANTIASTMAKRTGANYRMLHVPDHLGDEAYASMMQEPNIRDIVEVVRSARIVV 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIGDAM M RRRKL+ + + +GA+AE+FG+YF+ G+VVH M T+GLRLEDI++T Sbjct: 239 HGIGDAMVMARRRKLNPELVEAMAADGALAEAFGFYFDRNGEVVHKMQTVGLRLEDIVKT 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAAVEIGKEIDNQNHTV 349 EVVIG+AGG K +AI A+++FG D+LVTDEAAA+E+ ID Q ++ Sbjct: 299 EVVIGVAGGHSKGEAIAAIMKFGHNDVLVTDEAAALEMSAIIDEQQQSL 347 >C0Z6L9.1 C0Z6L9_BREBN Central glycolytic genes regulator Length = 341 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 166/335 (49%), Positives = 235/335 (70%), Gaps = 2/335 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 MR LLE+Q++LLPDL++ L++RY +L I IGRR LA ++D TER+LRAE +LLK Sbjct: 1 MRRLLELQQKLLPDLIQVLRQRYMLLRSIYHLQPIGRRGLAQAMDTTERILRAEVELLKE 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 GL+ + + GM +S+ G+++LD +EP+ LFGL DL E+++ G+ +VIVV G+ + S Sbjct: 61 TGLLHVTAAGMSLSEEGQQVLDDMEPLVGELFGLTDLAERLQKKLGIAEVIVVQGNADQS 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P+ K ELGR GA+ L V++ D VAVTGGS++A +A LT P S+KN VPARGGL Sbjct: 121 PWVKEELGRVGARVLKQVVQEGDIVAVTGGSSIASVASHLT-P-SASFKNVQFVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE +E+QANT+AS MA + GA+YRLLHVPD L +A Q+L + + +++ + Sbjct: 179 GERVELQANTLASAMAAKTGASYRLLHVPDRLHPEALQTLVKEPQVQDVLSLLGETRIVL 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIGDA+ M RRR E +AE+ E GAV+E+FGYYFNE G+ VH M T+GL+LE++ + Sbjct: 239 HGIGDAVTMARRRNYSEEELAELVETGAVSEAFGYYFNEAGETVHRMPTIGLQLEEVHKA 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAA 335 E V+ IAGG+ KAKAI + + +++L+TDE AA Sbjct: 299 ETVLSIAGGESKAKAILSFAKQSCQNVLITDEGAA 333 >C5D7M6.1 C5D7M6_9BACI Transcriptional regulator, DeoR family Length = 339 Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 165/335 (49%), Positives = 222/335 (66%), Gaps = 2/335 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 M++L+E QK+LLPDL+E +++RY ILH I L IGRR L+ SL +TERVLR+E LK Sbjct: 1 MQSLIEAQKKLLPDLLEVMQKRYRILHYISLMQPIGRRVLSGSLGITERVLRSEVQFLKE 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 Q L+ I S GM ++ G+ LL LE + + L GL DLE K+ + VIVV GD + S Sbjct: 61 QNLLTISSAGMSLTQEGKELLHALEDVMRELLGLKDLETKLMEKLHIEGVIVVAGDSDLS 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P+ K+E+GRA + L + D VAVTGG+TLA +A+ +T P P VPARGGL Sbjct: 121 PWVKKEMGRACVTCMKERLTNGDIVAVTGGTTLAAVAEMMT-PDP-KQNRILFVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE ++ QANTI + MA++ NYRLLHVPD LS +AY+SL + + E+++ V Sbjct: 179 GEDVKNQANTICAKMAEKALGNYRLLHVPDHLSREAYESLIEEPTVKEVLELIKSCRMVV 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIGDA+ M RRK + + +I+E AVAE+FGYYFNE G+VVH + T+G++LED+ R Sbjct: 239 HGIGDAITMAERRKTSKEDMEKIKERHAVAEAFGYYFNEAGEVVHKVKTVGIQLEDLPRV 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAA 335 E VI +AGG KAKAI A ++ IL+TDE AA Sbjct: 299 EHVIAVAGGSSKAKAIQAYMKQAPHSILITDEGAA 333 >A4ISP9.1 A4ISP9_GEOTN Transcriptional regulator Length = 339 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 159/335 (47%), Positives = 219/335 (65%), Gaps = 2/335 (0%) Query: 1 MRNLLEIQKQLLPDLMETLKRRYTILHQIMLSDIIGRRTLAASLDMTERVLRAETDLLKS 60 M++LLE QK+LLPDL+E +++RY ILH I L IGRR LAASL M+ERVLR+ET+ LK Sbjct: 1 MQSLLEAQKKLLPDLLEVMQKRYQILHSISLMAPIGRRALAASLGMSERVLRSETEFLKG 60 Query: 61 QGLIEIESVGMRVSDAGRRLLDLLEPIAKSLFGLDDLEEKIRTTYGLNKVIVVPGDCETS 120 Q L+ + GMR+++ G+ LL L + + GL +LE ++ + +V+VV GD + S Sbjct: 61 QNLLSTDVSGMRLTEEGQALLHTLNDLMREALGLKELETALKQRLNVARVVVVAGDSDRS 120 Query: 121 PFTKRELGRAGAKALLGVLRSEDTVAVTGGSTLAEMADQLTLPIPLSYKNAWVVPARGGL 180 P+ K+ELGRA + LR D VAV GG+T+A +A+ +T P P + VPARGGL Sbjct: 121 PWVKKELGRACVACMKEQLRPGDIVAVAGGTTMAAVAEMMT-PDP-KLADVLFVPARGGL 178 Query: 181 GESMEIQANTIASTMAKRIGANYRLLHVPDLLSEDAYQSLALDFNIGEIVQXXXXXXXXV 240 GE +E QANTI + MA++ YRLLHVPD LS +AY SL + + E+++ V Sbjct: 179 GEDVENQANTICAKMAEKATGRYRLLHVPDQLSGEAYASLIEEPAVKEVLELIQSCRMVV 238 Query: 241 HGIGDAMEMTRRRKLDEATIAEIQEEGAVAESFGYYFNEEGQVVHTMLTMGLRLEDIIRT 300 HGIG+A+ M +RRK + +I AVAE+FGYYFNE G VVH + T+G++LE++ Sbjct: 239 HGIGEAVTMAKRRKTPPVEMEKIIARHAVAEAFGYYFNEHGDVVHKVKTVGIQLENLPHV 298 Query: 301 EVVIGIAGGKRKAKAIHAMLRFGQEDILVTDEAAA 335 E VI +AGG KAKAI A ++ +LVTDE AA Sbjct: 299 EHVIAVAGGASKAKAIQAYIKRAPHSLLVTDEGAA 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,860,567,339 Number of extensions: 73285544 Number of successful extensions: 217490 Number of sequences better than 1.0e-05: 790 Number of HSP's gapped: 217043 Number of HSP's successfully gapped: 790 Length of query: 350 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 214 Effective length of database: 1,779,438,163 Effective search space: 380799766882 Effective search space used: 380799766882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)