BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0008.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8Y4I1.1 Q8Y4I1_LISMO Gap protein 630 e-179 A0ALE4.1 A0ALE4_LISW6 Gap protein EC=1.2.1.12 630 e-179 Q928H9.1 Q928H9_LISIN Gap protein 628 e-178 Q71WW7.1 Q71WW7_LISMF Glyceraldehyde-3-phosphate dehydrogenase, ... 628 e-178 C1KY98.1 C1KY98_LISMC Putative glyceraldehyde 3-phosphate dehydr... 628 e-178 >Q8Y4I1.1 Q8Y4I1_LISMO Gap protein Length = 336 Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/336 (89%), Positives = 322/336 (95%) Query: 1 MSVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGKFQGEVEV 60 M+VKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQG+F GEVEV Sbjct: 1 MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEV 60 Query: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTTKEAAEKHLKGGAKKVVIS 120 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFT ++ AE H+K GAKKVVIS Sbjct: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVIS 120 Query: 121 APATGDMKTVVYNVNHDVLDGTETVISGASCTTNCLAPMAKVLNDKFGIVEGLMTTIHAY 180 APATGDMKT+VYNVNH+ LDGTETVISGASCTTNCLAPMAKVL DKFG+VEGLMTTIHAY Sbjct: 121 APATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAY 180 Query: 181 TGDQNTLDAPHAKGDFRRARAAAENIVPNTTGAAKAIGLVIPALKGKLDGAAQRVPVATG 240 TGDQNTLDAPH KGDFRRARAAAENI+PNTTGAAKAIG V+P LKGKLDGAAQRVPV TG Sbjct: 181 TGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTG 240 Query: 241 SLTELVTVLEKNVTVEELNAAMKAASDPDTYGYTEDEIVSSDIKGMTFGSLFDATQTKVM 300 SLTELVTVL+K VTV+E+NAAM+AASDP+T+GYT D++VSSDIKGMTFGSLFD TQTKV+ Sbjct: 241 SLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVL 300 Query: 301 TVGDKQLVKTVAWYDNEMSYTAQLVRTLEHFAKLAK 336 TVGD+QLVKTVAWYDNEMSYTAQLVRTLE+FAK+AK Sbjct: 301 TVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK 336 >A0ALE4.1 A0ALE4_LISW6 Gap protein EC=1.2.1.12 Length = 336 Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/336 (89%), Positives = 322/336 (95%) Query: 1 MSVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGKFQGEVEV 60 M+VKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQG+F GEVEV Sbjct: 1 MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEV 60 Query: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTTKEAAEKHLKGGAKKVVIS 120 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFT ++ AE H+K GAKKVVIS Sbjct: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVIS 120 Query: 121 APATGDMKTVVYNVNHDVLDGTETVISGASCTTNCLAPMAKVLNDKFGIVEGLMTTIHAY 180 APATGDMKT+VYNVNH+ LDGTETVISGASCTTNCLAPMAKVL DKFG+VEGLMTTIHAY Sbjct: 121 APATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAY 180 Query: 181 TGDQNTLDAPHAKGDFRRARAAAENIVPNTTGAAKAIGLVIPALKGKLDGAAQRVPVATG 240 TGDQNTLDAPH KGDFRRARAAAENI+PNTTGAAKAIG V+P LKGKLDGAAQRVPV TG Sbjct: 181 TGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTG 240 Query: 241 SLTELVTVLEKNVTVEELNAAMKAASDPDTYGYTEDEIVSSDIKGMTFGSLFDATQTKVM 300 SLTELVTVL+K VTV+E+NAAM+AASDP+T+GYT D++VSSDIKGMTFGSLFD TQTKV+ Sbjct: 241 SLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVL 300 Query: 301 TVGDKQLVKTVAWYDNEMSYTAQLVRTLEHFAKLAK 336 TVGD+QLVKTVAWYDNEMSYTAQLVRTLE+FAK+AK Sbjct: 301 TVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK 336 >Q928H9.1 Q928H9_LISIN Gap protein Length = 336 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/336 (88%), Positives = 321/336 (95%) Query: 1 MSVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGKFQGEVEV 60 M+VKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQG+F GEVEV Sbjct: 1 MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEV 60 Query: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTTKEAAEKHLKGGAKKVVIS 120 HDGFF VNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFT ++ AE H+K GAKKVVIS Sbjct: 61 HDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVIS 120 Query: 121 APATGDMKTVVYNVNHDVLDGTETVISGASCTTNCLAPMAKVLNDKFGIVEGLMTTIHAY 180 APATGDMKT+VYNVNH+ LDGTETVISGASCTTNCLAPMAKVL DKFG+VEGLMTTIHAY Sbjct: 121 APATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAY 180 Query: 181 TGDQNTLDAPHAKGDFRRARAAAENIVPNTTGAAKAIGLVIPALKGKLDGAAQRVPVATG 240 TGDQNTLDAPH KGDFRRARAAAENI+PNTTGAAKAIG V+P LKGKLDGAAQRVPV TG Sbjct: 181 TGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTG 240 Query: 241 SLTELVTVLEKNVTVEELNAAMKAASDPDTYGYTEDEIVSSDIKGMTFGSLFDATQTKVM 300 SLTELVTVL+K VTV+E+NAAM+AASDP+T+GYT D++VSSDIKGMTFGSLFD TQTKV+ Sbjct: 241 SLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVL 300 Query: 301 TVGDKQLVKTVAWYDNEMSYTAQLVRTLEHFAKLAK 336 TVGD+QLVKTVAWYDNEMSYTAQLVRTLE+FAK+AK Sbjct: 301 TVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK 336 >Q71WW7.1 Q71WW7_LISMF Glyceraldehyde-3-phosphate dehydrogenase, type I EC=1.2.1.- Length = 336 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/336 (88%), Positives = 321/336 (95%) Query: 1 MSVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGKFQGEVEV 60 M+VKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQG+F GEVEV Sbjct: 1 MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEV 60 Query: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTTKEAAEKHLKGGAKKVVIS 120 HDGFF VNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFT ++ AE H+K GAKKVVIS Sbjct: 61 HDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVIS 120 Query: 121 APATGDMKTVVYNVNHDVLDGTETVISGASCTTNCLAPMAKVLNDKFGIVEGLMTTIHAY 180 APATGDMKT+VYNVNH+ LDGTETVISGASCTTNCLAPMAKVL DKFG+VEGLMTTIHAY Sbjct: 121 APATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAY 180 Query: 181 TGDQNTLDAPHAKGDFRRARAAAENIVPNTTGAAKAIGLVIPALKGKLDGAAQRVPVATG 240 TGDQNTLDAPH KGDFRRARAAAENI+PNTTGAAKAIG V+P LKGKLDGAAQRVPV TG Sbjct: 181 TGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTG 240 Query: 241 SLTELVTVLEKNVTVEELNAAMKAASDPDTYGYTEDEIVSSDIKGMTFGSLFDATQTKVM 300 SLTELVTVL+K VTV+E+NAAM+AASDP+T+GYT D++VSSDIKGMTFGSLFD TQTKV+ Sbjct: 241 SLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVL 300 Query: 301 TVGDKQLVKTVAWYDNEMSYTAQLVRTLEHFAKLAK 336 TVGD+QLVKTVAWYDNEMSYTAQLVRTLE+FAK+AK Sbjct: 301 TVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK 336 >C1KY98.1 C1KY98_LISMC Putative glyceraldehyde 3-phosphate dehydrogenase Length = 336 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/336 (88%), Positives = 321/336 (95%) Query: 1 MSVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGKFQGEVEV 60 M+VKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQG+F GEVEV Sbjct: 1 MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEV 60 Query: 61 HDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTTKEAAEKHLKGGAKKVVIS 120 HDGFF VNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFT ++ AE H+K GAKKVVIS Sbjct: 61 HDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVIS 120 Query: 121 APATGDMKTVVYNVNHDVLDGTETVISGASCTTNCLAPMAKVLNDKFGIVEGLMTTIHAY 180 APATGDMKT+VYNVNH+ LDGTETVISGASCTTNCLAPMAKVL DKFG+VEGLMTTIHAY Sbjct: 121 APATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAY 180 Query: 181 TGDQNTLDAPHAKGDFRRARAAAENIVPNTTGAAKAIGLVIPALKGKLDGAAQRVPVATG 240 TGDQNTLDAPH KGDFRRARAAAENI+PNTTGAAKAIG V+P LKGKLDGAAQRVPV TG Sbjct: 181 TGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTG 240 Query: 241 SLTELVTVLEKNVTVEELNAAMKAASDPDTYGYTEDEIVSSDIKGMTFGSLFDATQTKVM 300 SLTELVTVL+K VTV+E+NAAM+AASDP+T+GYT D++VSSDIKGMTFGSLFD TQTKV+ Sbjct: 241 SLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVL 300 Query: 301 TVGDKQLVKTVAWYDNEMSYTAQLVRTLEHFAKLAK 336 TVGD+QLVKTVAWYDNEMSYTAQLVRTLE+FAK+AK Sbjct: 301 TVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK 336 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,924,922,614 Number of extensions: 79857224 Number of successful extensions: 274447 Number of sequences better than 1.0e-05: 7056 Number of HSP's gapped: 251671 Number of HSP's successfully gapped: 7060 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)