BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0007.p (393 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K399.1 B3K399_9BACI Phosphoglycerate kinase EC=2.7.2.3 676 0.0 B1DKY9.1 B1DKY9_9BACL Phosphoglycerate kinase EC=2.7.2.3 649 0.0 C1P7Z5.1 C1P7Z5_BACCO Phosphoglycerate kinase EC=2.7.2.3 595 e-168 C5D7M4.1 C5D7M4_9BACI Phosphoglycerate kinase EC=2.7.2.3 595 e-168 B7GL27.1 PGK_ANOFW Phosphoglycerate kinase EC=2.7.2.3 593 e-168 >B3K399.1 B3K399_9BACI Phosphoglycerate kinase EC=2.7.2.3 Length = 393 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/393 (84%), Positives = 364/393 (92%) Query: 1 MNKKSVRDVEVKGKRVFVRVDFNVPVEDGKITDDTRIRETLPTIKYLIENGAKVILASHM 60 MNKKSVRDVEV GKRVFVRVDFNVP+EDGKITDDTRIRETLPTIKYL+E GAKVILASHM Sbjct: 1 MNKKSVRDVEVSGKRVFVRVDFNVPLEDGKITDDTRIRETLPTIKYLVEQGAKVILASHM 60 Query: 61 GRPKGQFVDSMRLTVAAVRLSELLGKPVAKADEAIGEAVKAKIAELKDGDVLVLENVRFY 120 GRPKG+ V+S+RLT A+ RLSELLGKPVAKADEA+GEAVKA++ +L++GDVLVLENVRFY Sbjct: 61 GRPKGEVVESLRLTPASQRLSELLGKPVAKADEAVGEAVKAQVEKLQNGDVLVLENVRFY 120 Query: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHFLPAVSGLLMEKELNVLGK 180 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAH LPAVSGLLMEKEL+VLGK Sbjct: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHHLPAVSGLLMEKELSVLGK 180 Query: 181 ALSNPERPFTAIIGGSKVKDKIDVIDNLLTLADNVLIGGGLSYTFTKAQGYEIGNSLVDN 240 ALSNP+RPFTAIIGGSKVKDKIDVIDNLLTLADNV+IGGGL+YTF KAQG+EIG SL+D Sbjct: 181 ALSNPDRPFTAIIGGSKVKDKIDVIDNLLTLADNVIIGGGLAYTFFKAQGHEIGQSLLDK 240 Query: 241 DKIDAALGFIEKAKKLGKNFVLPVDVVVADKFGADANTKVVDVTDIPAGWEGLDIGPKTR 300 +K+D ALGFIEKAK+LGKNF LP D+VV D+F ADANTKVVD+ IPA WEG+DIGPKTR Sbjct: 241 EKLDVALGFIEKAKELGKNFYLPEDIVVTDEFSADANTKVVDIDGIPADWEGVDIGPKTR 300 Query: 301 EIYADIIKNSKLVVWNGPMGVFEIDIFAEGTLAVAKACATTEGYTVIGGGDSAAAAEKFH 360 YA++IKNSKLVVWNGPMGVFEI F+ GT VA+ACA TE YT+IGGGDSAAAAEKF Sbjct: 301 AKYAEVIKNSKLVVWNGPMGVFEIAPFSNGTREVAQACAETEAYTIIGGGDSAAAAEKFG 360 Query: 361 LADQMDHISTGGGASLEFMEGKALPGVEALNDK 393 LAD+MDHISTGGGASLEFMEGKALPGV ALNDK Sbjct: 361 LADKMDHISTGGGASLEFMEGKALPGVVALNDK 393 >B1DKY9.1 B1DKY9_9BACL Phosphoglycerate kinase EC=2.7.2.3 Length = 393 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/393 (80%), Positives = 355/393 (90%) Query: 1 MNKKSVRDVEVKGKRVFVRVDFNVPVEDGKITDDTRIRETLPTIKYLIENGAKVILASHM 60 MNKKSVRDVEV GKRVFVRVDFNVP+EDGKITDD RIRETLPTI YLIE GAKVILASH+ Sbjct: 1 MNKKSVRDVEVAGKRVFVRVDFNVPLEDGKITDDKRIRETLPTINYLIEKGAKVILASHL 60 Query: 61 GRPKGQFVDSMRLTVAAVRLSELLGKPVAKADEAIGEAVKAKIAELKDGDVLVLENVRFY 120 GRP G+ V+ +R T +AVRLSELLGKPV KA++++GE VKA+I L +GDVL+LENVRF+ Sbjct: 61 GRPNGEVVEELRHTASAVRLSELLGKPVVKANDSVGEEVKAQINALNNGDVLLLENVRFH 120 Query: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHFLPAVSGLLMEKELNVLGK 180 GEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAH LPAVSGLLME+EL+VLGK Sbjct: 121 AGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHHLPAVSGLLMERELDVLGK 180 Query: 181 ALSNPERPFTAIIGGSKVKDKIDVIDNLLTLADNVLIGGGLSYTFTKAQGYEIGNSLVDN 240 AL+NPERPFTAI+GGSKVKDKIDVI+ ++ +ADN++IGGGLSYTF KAQG+EIG SLVDN Sbjct: 181 ALNNPERPFTAIVGGSKVKDKIDVINKMIEIADNIIIGGGLSYTFFKAQGHEIGQSLVDN 240 Query: 241 DKIDAALGFIEKAKKLGKNFVLPVDVVVADKFGADANTKVVDVTDIPAGWEGLDIGPKTR 300 K+D AL FIEKAK LGKNF++PVD+VV D+F DANTK+VDV IPA WEG+DIGPKTR Sbjct: 241 SKLDLALEFIEKAKTLGKNFLIPVDIVVTDEFSKDANTKIVDVDGIPADWEGIDIGPKTR 300 Query: 301 EIYADIIKNSKLVVWNGPMGVFEIDIFAEGTLAVAKACATTEGYTVIGGGDSAAAAEKFH 360 EIYAD+IKNSKLVVWNGPMGVFEI+ F+ GT AVA ACA T GYTVIGGGDSAAAAEKF Sbjct: 301 EIYADVIKNSKLVVWNGPMGVFEIEPFSHGTRAVANACAETAGYTVIGGGDSAAAAEKFG 360 Query: 361 LADQMDHISTGGGASLEFMEGKALPGVEALNDK 393 +AD+MDHISTGGGASLEFMEGKALPGV ALNDK Sbjct: 361 VADKMDHISTGGGASLEFMEGKALPGVVALNDK 393 >C1P7Z5.1 C1P7Z5_BACCO Phosphoglycerate kinase EC=2.7.2.3 Length = 394 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 290/394 (73%), Positives = 339/394 (86%), Gaps = 1/394 (0%) Query: 1 MNKKSVRDVEVKGKRVFVRVDFNVPVEDGKITDDTRIRETLPTIKYLIENGAKVILASHM 60 MNKKS++DVE++GKRVF RVDFNVP++DG +TDDTRIR LPTIKYL+ENGAKVILASH+ Sbjct: 1 MNKKSIKDVELQGKRVFCRVDFNVPLKDGNVTDDTRIRAALPTIKYLVENGAKVILASHL 60 Query: 61 GRPKGQFVDSMRLTVAAVRLSELLGKPVAKADEAIGEAVKAKIAELKDGDVLVLENVRFY 120 GRPKGQ V+ +RLT A RLSELLGK V KA+EA GE+VKA+I+++ +GDVL+LENVRFY Sbjct: 61 GRPKGQVVEELRLTPVAKRLSELLGKDVKKANEAYGESVKAEISKMNNGDVLLLENVRFY 120 Query: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHFLPAVSGLLMEKELNVLGK 180 PGEEKNDPELAK+FA LA+L+VNDAFGAAHRAHASTEGIAH LPAVSG LM+KEL+VLGK Sbjct: 121 PGEEKNDPELAKEFASLAELYVNDAFGAAHRAHASTEGIAHHLPAVSGFLMQKELDVLGK 180 Query: 181 ALSNPERPFTAIIGGSKVKDKIDVIDNLLTLADNVLIGGGLSYTFTKAQGYEIGNSLVDN 240 ALSNPERPFTAIIGG+KVKDKI VIDNLL DN++IGGGL+YTF KAQG+EIG SL++ Sbjct: 181 ALSNPERPFTAIIGGAKVKDKIGVIDNLLDKVDNLIIGGGLAYTFVKAQGHEIGKSLLEE 240 Query: 241 DKIDAALGFIEKAKKLGKNFVLPVDVVVADKFGADANTKVVDVTDIPAGWEGLDIGPKTR 300 DKID A F+ KAK+ G NF +PVD +VAD+F AN K V + +IPA W+ LDIGPKT Sbjct: 241 DKIDLAKSFMAKAKEKGVNFYMPVDAIVADEFSETANKKEVAIEEIPADWQALDIGPKTV 300 Query: 301 EIYADIIKNSKLVVWNGPMGVFEIDIFAEGTLAVAKACATTEG-YTVIGGGDSAAAAEKF 359 E+YA +IK SKLV+WNGPMGVFE+D +A GT VA+A A G Y++IGGGDSAAA EKF Sbjct: 301 ELYAKVIKESKLVIWNGPMGVFEMDAYANGTKGVAEALADATGTYSIIGGGDSAAAVEKF 360 Query: 360 HLADQMDHISTGGGASLEFMEGKALPGVEALNDK 393 HLA++MDHISTGGGASLEFMEGK LPGV ALNDK Sbjct: 361 HLAEKMDHISTGGGASLEFMEGKTLPGVAALNDK 394 >C5D7M4.1 C5D7M4_9BACI Phosphoglycerate kinase EC=2.7.2.3 Length = 394 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 293/394 (74%), Positives = 338/394 (85%), Gaps = 1/394 (0%) Query: 1 MNKKSVRDVEVKGKRVFVRVDFNVPVEDGKITDDTRIRETLPTIKYLIENGAKVILASHM 60 MNKK+VRDV+VKGKRVF RVDFNVP+E+G ITDDTRIR LPTI+YL+E GAKVILASH+ Sbjct: 1 MNKKTVRDVDVKGKRVFCRVDFNVPMENGAITDDTRIRAALPTIRYLMEQGAKVILASHL 60 Query: 61 GRPKGQFVDSMRLTVAAVRLSELLGKPVAKADEAIGEAVKAKIAELKDGDVLVLENVRFY 120 GRPKG+ V+ +RL A RLSELLGK V K DEA G+AVK I+++ +GDVL+LENVRFY Sbjct: 61 GRPKGKVVEELRLNAVARRLSELLGKHVTKTDEAYGDAVKEAISKMNEGDVLLLENVRFY 120 Query: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHFLPAVSGLLMEKELNVLGK 180 PGEEKNDPELAK FAELAD++VNDAFGAAHRAHASTEGIAH+LPAV+G LMEKE+ VLGK Sbjct: 121 PGEEKNDPELAKAFAELADIYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKEIEVLGK 180 Query: 181 ALSNPERPFTAIIGGSKVKDKIDVIDNLLTLADNVLIGGGLSYTFTKAQGYEIGNSLVDN 240 ALSNP+RPFTAIIGG+KVKDKI VI+NLL DN++IGGGL+YTF KA G+EIG SL++ Sbjct: 181 ALSNPDRPFTAIIGGAKVKDKIGVIENLLNKVDNLIIGGGLAYTFVKALGHEIGKSLLEE 240 Query: 241 DKIDAALGFIEKAKKLGKNFVLPVDVVVADKFGADANTKVVDVTDIPAGWEGLDIGPKTR 300 DKI+ A F+EKAK+ G NF +PVDVVVAD+F DANTKVV + IP+ WE LDIGPKTR Sbjct: 241 DKIELAKSFMEKAKEKGVNFYMPVDVVVADRFANDANTKVVSIDAIPSDWEALDIGPKTR 300 Query: 301 EIYADIIKNSKLVVWNGPMGVFEIDIFAEGTLAVAKACA-TTEGYTVIGGGDSAAAAEKF 359 E+Y D+I SKLVVWNGPMGVFE+D FAEGT AVA+A A + Y+VIGGGDSAAA EKF Sbjct: 301 ELYRDVIMKSKLVVWNGPMGVFEMDAFAEGTKAVAQALADAVDTYSVIGGGDSAAAVEKF 360 Query: 360 HLADQMDHISTGGGASLEFMEGKALPGVEALNDK 393 LA++MDHISTGGGASLEFMEGK LPGV ALNDK Sbjct: 361 GLAEKMDHISTGGGASLEFMEGKQLPGVVALNDK 394 >B7GL27.1 PGK_ANOFW Phosphoglycerate kinase EC=2.7.2.3 Length = 394 Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust. Identities = 293/394 (74%), Positives = 337/394 (85%), Gaps = 1/394 (0%) Query: 1 MNKKSVRDVEVKGKRVFVRVDFNVPVEDGKITDDTRIRETLPTIKYLIENGAKVILASHM 60 MNKK+VRD++VKGKRVF RVDFNVP+++G +TDDTRIR LPTI+YL+E GAKVILASH+ Sbjct: 1 MNKKTVRDIDVKGKRVFCRVDFNVPMQNGVVTDDTRIRAALPTIQYLMEQGAKVILASHL 60 Query: 61 GRPKGQFVDSMRLTVAAVRLSELLGKPVAKADEAIGEAVKAKIAELKDGDVLVLENVRFY 120 GRPKG+ V+ MRL A RLSELLGK V K DEA G+ VKA IAE+ +GDVL+LENVRFY Sbjct: 61 GRPKGKVVEEMRLNAVAERLSELLGKRVVKTDEAYGDTVKAAIAEMNEGDVLLLENVRFY 120 Query: 121 PGEEKNDPELAKQFAELADLFVNDAFGAAHRAHASTEGIAHFLPAVSGLLMEKELNVLGK 180 PGEEKNDPELAK FAELAD++VNDAFGAAHRAHASTEGIAH LPAV+G LMEKE+ VLGK Sbjct: 121 PGEEKNDPELAKAFAELADVYVNDAFGAAHRAHASTEGIAHHLPAVAGFLMEKEIEVLGK 180 Query: 181 ALSNPERPFTAIIGGSKVKDKIDVIDNLLTLADNVLIGGGLSYTFTKAQGYEIGNSLVDN 240 ALSNP+RPFTAIIGG+KVKDKI VI+NLL DN++IGGGL+YTF KA G+EIG SL++ Sbjct: 181 ALSNPDRPFTAIIGGAKVKDKIGVIENLLDKVDNLIIGGGLAYTFVKALGHEIGKSLLEE 240 Query: 241 DKIDAALGFIEKAKKLGKNFVLPVDVVVADKFGADANTKVVDVTDIPAGWEGLDIGPKTR 300 DKID A F+EKAK+ G NF +PVD VVAD F DAN KVV++ +IP+ WEGLDIGPKTR Sbjct: 241 DKIDLAKSFMEKAKEKGVNFYMPVDAVVADDFSNDANKKVVNIDEIPSDWEGLDIGPKTR 300 Query: 301 EIYADIIKNSKLVVWNGPMGVFEIDIFAEGTLAVAKACA-TTEGYTVIGGGDSAAAAEKF 359 E+Y D+I SKLV+WNGPMGVFE+D FAEGT AVA+A A + YTVIGGGDSAAA EKF Sbjct: 301 ELYRDVILKSKLVIWNGPMGVFEMDAFAEGTKAVAQALADAKDTYTVIGGGDSAAAVEKF 360 Query: 360 HLADQMDHISTGGGASLEFMEGKALPGVEALNDK 393 LA++MDHISTGGGASLEFMEGK LPGV ALNDK Sbjct: 361 GLANKMDHISTGGGASLEFMEGKQLPGVVALNDK 394 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,349,188,397 Number of extensions: 102641596 Number of successful extensions: 301759 Number of sequences better than 1.0e-05: 2216 Number of HSP's gapped: 293892 Number of HSP's successfully gapped: 2236 Length of query: 393 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 255 Effective length of database: 1,760,596,133 Effective search space: 448952013915 Effective search space used: 448952013915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)